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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000107_pilon:104873..112507+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_036830 ID=XLOC_036830|Name=XLOC_036830|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7635bp|location=Sequence derived from alignment at sc0000107_pilon:104873..112507+ (Clytia hemisphaerica_ch_hm2_pilon)
atggttcgaaacacaagaaaaaatttagaaGATGAAAAGAAGAATGGAGA
TTCTGATTTCCAGTGGATTGGTGAAGGATGTAAAGTGAAACGTATGTGGC
AATATCGGTAAGGcacattatttattattttgtgtacaaaaaattgtttc
tgcCCAACCGTCTCCTATCTGGAGATCGAGAAAGTTcctagaaattaaaa
aatatgaaaaatatgaaaaactgtCTTGTATCCACTTAAATTTTATGCGT
ATGGCAGTTAAAACTTAGATTAAACTTTATCTCCGCAGTTTTACTTTACC
TTTTACTTTGATAATCCGAGAACCTATCTAATACTGCCCAACTTATATCG
CCCTGCCTGAGTGACTTACAAACACCCTTGCCTTTTGACCTCTCCGCCCT
AGTAAAATCAGGATCATATTATTACTGAGCTCAATTATTATTACTTGACC
TTCATTCAATGACTGCTTATCTTTCCGGACGCCCTTTATTTAGAGATAAT
ATGAAGCCGAGAGACATAGCTAGAGAAATGGCTGAAATGACCtagcaaaa
tttctgaaaaaatttgagtaatAGCTATGAGGCTACATACAGCTTCTCTG
TCCAGTTTTTACTGAATTCACATTTCCTAGCTTATTTCACAATTTTGATT
AAGAAAAACTCAGGTTCTAGAGCTGAAATTGGCTGAAGCGACCCAGTTAA
CTTAATCGAGTTTGATCTGTAATTTTGTGAAAGTTAAAGTGACTTTCATG
TCTTAACTGATCTTATGGCTTTAATTCTTGTCAATCGATCTCTTAGAATG
GATTAGAATTATCTATCAGAAAATTCTTTTGTAGATCATACACAGTGAAT
GGTTTAGTGAACTGACTGGTCCCacaaaattatattgttctttGCAAGTA
AACCTAAACATACAAAAAACAATAAGGACAGATAAGGATAGATTCGTTCA
TCTTCTTTGTATCATTTTTCATCTAGATCATTCAGAGTGAATGGTGTAGT
GGTCACACTGAACGACAATGTTCTCATCAAACCAGGCAGTCCTATAGTAA
ACCTTAAAAGATTCCTTCATGTTTTTGACCTTCTTTTTCATCTAGATCAT
GCAGAGTGAATGGTATAGTGGTCACACTGAACGACAATGTTCTCATTAAA
CAAGGggatgacgatgatgatgaagatAAACAACCTGCTCTTGGTCAACT
CTTGGAGCTGTATGAAAGCATTGGCAATGATCCAAACAGAGCCAAAGTTC
GATGGTATTTCTATCACCATGAGATGCCAAAATCCTTCAGATCACTTGTC
AGTaagtaagctctagtttagaagGGCGACTTTCTGCACTCTTATTGTTG
GAGTCTAGGCAcatataccttattggaactaattttcgcgggaagtAATT
TTCGCGGTCTaaaaaaaaTATCcggaaaattgcatttcgcgggtgttaat
tttcgcggttttttccattctggaattttcgcgggttttaattttcgcgg
ttttgcccttttttggacaaattctttcattttgctagggatttttcaga
tgttttgataaaattagaaaaaattgtatttcgcgggaattaattttcgc
ggttttcaactctcaaaattttttgcgggatcaaattttcgcgattttga
cgaaaaaccgcgaaaaacgctaaaattaaaacccgcgaaaattagttcca
ataaggtaagtgggcaaaaagttgacacttaaaaatattttcttgaaaga
ATAAGGTAATGACTTCAGACAGTAAGTAAGCTCTAGTTAAGAAGGCTGAC
TTTCTTCACTGCTCTCTGCAGTCttattgttagagtaggcaaaaaAGTGG
GTAGAAAGTTGacacttaaaaatctttttttgaaataataatgTATTGAC
TTCAGGCAGCCAtttttttACCTCTTTAATATACtattagaatagacagg
gcgAAAAGTAGTCCGTCTTAACTAGAGCTCATTAACAAGTGTATGAAAAA
GTGAGCTAGCTGATTTAAGCAAAGTTTTGTTGCTGTTTCTTCCAGCCTag
gattgggcttttccagttAAAATCCGTACCCCCCACGTTGAGGATATCCA
AGATGTTGTTGCTGTTTCTTCCAGCCTAGGATTAAGTGATTGAATTAAGT
GTAGCATCACATAATGGCTTGTGTCTgattaatattaaaaaaatatgatt
tttttttaaatttacagtACTGTATGtacattttgattgaattttccATT
TCTTAGTAAGAAAATGTCAGTGGTTCAGTTAAGTATTTTTCTTCTCCAGT
TGCGTGGTGGGTCGACAAAATTTCAGGCAAATTGGGTAGGCAATTgtgga
aaaatttgattttggtaTCCTTATCAAAAGTAATCTTTGTAAAAATTAGT
AATTTGTGAGtatattttttaccaaaagcTGCTATTTCTGAGGAGTAAAT
AGAACAAGAGGCGTtaaaattagtaatcagaggtGTCTTTTTGCGCCTTT
TGCATTTCGACGCCCCCCAAATAATTAACCGCTGGGGGAACTGCACCCCT
GCCACCCCTGTCACCACGCTACTGtccttttccttttctcttTCAGAACC
GGAAGAACAGGAAGTGTACACGTCTTTGGATGATTCACATGGTGGTGTTG
AAGATATTGACGCTGAAACCATCATTGGTATGTTAAACTTAAACATGTTT
TTAACGTTTCCTTTCCACACTATTTCAGCTTTTAACGttttttCTGATGG
TTTGgtctaaacaacaaaatttgCTAGATTTAATGCatttaattcaattt
tgatttaaagttTGATGATGTcatgaaatatcttttgataggAACTTTTT
CAAGTCATCTTTTTATACCATCAGATTTAAAActattttcccataaaaat
tttttttaccacccaCCCAACACCCTTTACTACTACTCGAAACTTGGTTT
TGGACCCTCTAAGTATAATCTGCACCAGATTTCATTcctttatcaccatc
tgaagtattcttacgtttttgaATGGACTCCCCCATCAAAAAGAGGAGGC
ATAGCATATCGTCGCTGTAAAATAAGAGTGCCTTATGtccatttttgaca
ttttgaggaAATAGCATTTTAAGAATTCTCATGTTTGTAGTATTGAACAT
AAGGCACTCTTATTTTACAGCGATGACGTCGCTGTAAAATAAGAGTGCCT
TATGTCCAATACTACAAACATGAGAATTCTTAAAATGCTATTtcctcaaa
atgtcaaaaatggaCATAAGGCACTCTTATTATTACGATATGATCTTCGT
AAAATCTTTCGAATTGACAATAAATCACACTTTTACTTGACAATTTAGGA
TATAATTTTTAGGTTTTAGATTTCCGCCTAAATTAATGTTTGTATaaaaa
aaCTATCAGTACCCGAAATAAATTTTCCCCattactttctttttgtttcc
acAGGCAATTGTAACGTTCAcaaatgttttgataaaaagcTCCCCAAATG
CATTGGCGAAAGTGACTTTTTCACAAGGTAAAAACTTCCATCATTTTTGt
tgttatatattttgttgtgaAAATTAGACAACCTAACCTAAAGTTTGAGg
tataaattttcaaatctgaCCCACTcgcttttcgaaaagtgtaaaaaaaa
acatgccaGTAGAGGGTATAATGTATTTGGGCATCTTAAGACATTTTCCG
CTTGGCCCTTTTTCATAGTGAGGGGGGTCCCATCTTCATGAAAAAGGGTC
AAtctcaagatttaaagttagcaaaatggaaaaattcttAGTTTCCTCAg
atactaattttgagattggaccttttgcctTGATGACAGCGATAATATAC
AGAGCTTGCTGCATGAGTGACTAGCCTAGAAACATAGGAACTTAAAGTGG
GCGTTTTAATTAAGTACTTGCGATTAAGTAAATTGCGACAAACACCACTA
TAACATTTgacacaaaagggaaattccaaccaaactttaaaaccgcaagc
gatttttaagtgctttaaagtacggttggaaagtaAAGTCTTAACTCTGA
GCTTTAACATTAGACTTCAGACTtgagaccttaggatctcaggatctgaG
GCTAAAATATATTCTAATATGGCTGAGAATACAGCCTGGAATCCACTTAa
gccctcccaaatcgaaaaaatcCAACGGAGCAAAATGCAGAAATAGTAAT
CCGCGCCCAAGCTTTAAATtccgaaaaacgctaaaatacccaaatttgcg
agtatatttcggcgctgattgaAACAgtgggatacaaaatcaaaatagat
atCACATATTCCAAGGACCTTGGCAAGGTGCAAACCAAAATAAGTATGAG
TAATTCAGGGTAATTAATTAATAAGGTTGATTTGGCACGTCATTTCTAGT
TGTTTTATTATATGGCAAAcggttttatagtttttttgtttactttttaa
cgctttcatgcccttttaaaggttttgtttttaaataagagtgatatatt
ttgcttattcattaattttaatttacaagcttttcacattgaattgacac
ggatgtggggCAAgcttggtcagaaagaggaaaagaaaaatttttttttg
catatatCAGCACAattataacaataggcagacactgtcctgatatgaaa
catgtgtctgatatgaactatgtgtctgatatgaaacgggaacacttatg
taaaataGAGACTTTAAAGTATGATGAAAGAGGACTGTGGGTTTTCAATA
CTTGTTGcaattataataaaaattttatttggttttcAGATATTGTTTTG
GAGCAGGTCTTGGCATCAAATGTTTCAAAGAAGAAAGGACACCAAAGGCA
CCAACAAAGATTTGTAAGGCTCACCTTCTTTTAATGTTCTTCCTAAAGTT
TTGCCTAAAAGGGATTAACagtaaattttaaacatttcttTCCTCCTGAA
TAACATTTGAAAGAGAAGCATTCAAATTATgtctcattttatttttaagg
aaCTCTGacgattgaaaattttttttgctgtgagttaaaaaaagttgaag
caTCTTTTCTTCTTACTGAGAGCGGAACTCCCTGTAATGTCCCTTTTTCA
CTTTCTCAAAAACCGAATcttgaaaatgaataaatttctgTTCACCGGTT
TCACCTTTAATATATATTTTAGCCAAATCGAGTAAAAGTGAGCCACCCAA
AGCCAGAAGGTCCCTAATGCCAAACCGTAAACCATTGGAAGCATTGGAGA
ACAATCCTCTGAATGGTTCACCGAAGCGTAAAGGAAGCGATAGTGTATAT
AAAGAATGTTCAGCACCTCCCGATAAAGTGAAGAAACGTAACAAATCTTC
TGTATCGACACCATCAAGTCAAGCGATGCATCGACGTTTCAGTAAGTTTG
TTGACTAATTATTTTATGGTTCAGAAGATAAATTTTACAAGAGGCTATAA
TAAGATTCTAGTGTTATTTATACCTGGTGCGCCACATAAAAGGCTttcaa
gtgaattttctcgagatctaaacattttgaaagaacaaattcttttttta
ttgaaaagatgaaagattaacttaaattttgaaggggtcattttattaaa
tttggttcattagatcaaaacttaTCCTCAATTGAAAAAAGTTCTCAAGT
TTTAAGTTGTTTTCAAACTAATCTAGTAACTCTTTTTGTGTCCCtttttt
tACGTTGTTACCCTCTTTTTCCTTCCCAGGTACTCAACAAGCAGTCAACA
AACTTTTAGACTCAGACGACGAGGATCTAGGTAGCCTGTCTGACAgctca
aaatcttcaatcaGTACACAGTCTAGTGTCAAATCAAACGCAAGCGGTCG
TTCCAACGCATCTTCGAAAAGCTCAAAACGTTCGAAGAAAACTCAATCCG
TTACAACAACCAAgatcaaaaataaagaagaaaacatcAGAACAGAAAAT
TCAACCATTGCCACTAGACGAAAAAGCTGTATGCCAGCCTTTGAAGCAAA
ACAACCACCTGCAGTGGCTAGAGTGACACGTTCAGCTATTAAACTGCAGC
CTACGCCGAAGTCTACTTCAAAACAGACTAAGAAACGTAACAAGAATTTA
ACAAGTCATGAAGTGATGGTGAAAATTGAACAAATGAATCTGGTGGATGA
AAAATCACGATTGAATTCAGATGTCTTCGATTTTGATAATGATGAACAGG
TCAGTCAAACTTTTTAATAACAAACCTACATcggccgtagcatgaaggta
gagcatccagctacggtgtgcaaggttgtgggttcgatccccagccgggt
cataccaaagattcttaaaacggttcttgatgcctctctgcttgatactc
atcaattaaagagacggactaagggtaagtggagaaatccagggaaagta
gatgcgccctcccctaccttcgggtagacagctagataaaagggagcctt
cgggtcgccctcgactgtgGTTTCAGACATACTTAATTATACCAAACCTT
CTGTCATTTTCTGAGTAGGAGAAAAGTAAAAGAGCAGAGACGAGGGAAGG
TTTTAGAGCTGGTCTTAAAATAACGAGGAAAGttagcatccagctacggt
ttGCAAGATTGTGGGTTctatccccagccgggtcataccaaagattccta
taatggtacttgatgcctctctgcttgatgctcagcaattaaagagacgG
ACCGAGGGTATGTGaaaaaatccagggaaaggagtggcgccctcccctac
cttcgggtagacagccttcgggtcgccctcgactgcggttgcagacttac
ttacttataccAAACCTTCTGTCATTTTCTGAGTAGGAGACGAGGGAAGG
TTTTAGATCTGGTCTTACAAACGAGGAAAATTAATAAATCTTACCAATGA
TGCTACAAATTTTATGCTGTTTAGCTGAAACTCGGGATAGCGGTCCCAAT
AACCTTGCCCGGTGCGACACGTGCCTGAAGAGGATTGCACTGtttttttG
ATGTACTTAGGGTATATTTCACCTTTTGAACGTTTGATAATATAGCTTTG
AAACATCATGTTTTCCTGTTGAAGAGCTAACGGTATGAGTAGTTATGGGT
TTTGGACAGTAGAGAAACTTTATGCCaataatatatgaaaaaaagatttt
gtacGGAATTACCGAAAAAACTTGTtagccaaaatcaaaaattttttaac
cgaattcgttaaacttttttttgccgAAGCGTTTCGAATGAAAGGATTGA
GCCGAAATTTGGTtataattttgagaaaatcccTTAAAGACCTCGGAAAG
AAAAAACCGTCATATTTATTTCAACCCTGTGACGGTCACAGGCTGTCATA
TTTTTCTGTCCCCCAATCTCAAAGATTAACCTTAGCCGAATTTTATCCTG
TGACCAAATACTTTAACGCGAAATGGCttttttttAGGAGGACAAGGCGC
CGATATCCTTTGTCACACGATCTGGTCGGAAAGCGAAGACCACGAACTCG
AATGTCTCAAAACGAGAATTGTCTACACGAAGTCATAACAAGGAAGATGA
TGATTTTGTAAATGAAAGTGGTGAGTCGTCAGGTGAAGaagctgaaatcg
aaagtgaaagtgacgGAGACATCAGTAATTCTGAT Coding sequence (CDS) from alignment at sc0000107_pilon:104873..112507+ >XLOC_036830 ID=XLOC_036830|Name=XLOC_036830|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2856bp|location=Sequence derived from alignment at sc0000107_pilon:104873..112507+ (Clytia hemisphaerica_ch_hm2_pilon)
atggttcgaaacacaagaaaaaatttagaaGATGAAAAGAAGAATGGAGA
TTCTGATTTCCAGTGGATTGGTGAAGGATGTAAAGTGAAACGTATGTGGC
AATATCGatggttcgaaacacaagaaaaaatttagaaGATGAAAAGAAGA
ATGGAGATTCTGATTTCCAGTGGATTGGTGAAGGATGTAAAGTGAAACGT
ATGTGGCAATATCGATCATGCAGAGTGAATGGTATAGTGGTCACACTGAA
CGACAATGTTCTCATTAAACAAGGggatgacgatgatgatgaagatAAAC
AACCTGCTCTTGGTCAACTCTTGGAGCTGTATGAAAGCATTGGCAATGAT
CCAAACAGAGCCAAAGTTCGATGGTATTTCTATCACCATGAGATGCCAAA
ATCCTTCAGATCACTTGTCAATCATGCAGAGTGAATGGTATAGTGGTCAC
ACTGAACGACAATGTTCTCATTAAACAAGGggatgacgatgatgatgaag
atAAACAACCTGCTCTTGGTCAACTCTTGGAGCTGTATGAAAGCATTGGC
AATGATCCAAACAGAGCCAAAGTTCGATGGTATTTCTATCACCATGAGAT
GCCAAAATCCTTCAGATCACTTGTCAAACCGGAAGAACAGGAAGTGTACA
CGTCTTTGGATGATTCACATGGTGGTGTTGAAGATATTGACGCTGAAACC
ATCATTGAACCGGAAGAACAGGAAGTGTACACGTCTTTGGATGATTCACA
TGGTGGTGTTGAAGATATTGACGCTGAAACCATCATTGGCAATTGTAACG
TTCAcaaatgttttgataaaaagcTCCCCAAATGCATTGGCGAAAGTGAC
TTTTTCACAAGGCAATTGTAACGTTCAcaaatgttttgataaaaagcTCC
CCAAATGCATTGGCGAAAGTGACTTTTTCACAAGATATTGTTTTGGAGCA
GGTCTTGGCATCAAATGTTTCAAAGAAGAAAGGACACCAAAGGCACCAAC
AAAGATTTATATTGTTTTGGAGCAGGTCTTGGCATCAAATGTTTCAAAGA
AGAAAGGACACCAAAGGCACCAACAAAGATTTCCAAATCGAGTAAAAGTG
AGCCACCCAAAGCCAGAAGGTCCCTAATGCCAAACCGTAAACCATTGGAA
GCATTGGAGAACAATCCTCTGAATGGTTCACCGAAGCGTAAAGGAAGCGA
TAGTGTATATAAAGAATGTTCAGCACCTCCCGATAAAGTGAAGAAACGTA
ACAAATCTTCTGTATCGACACCATCAAGTCAAGCGATGCATCGACGTTTC
ACCAAATCGAGTAAAAGTGAGCCACCCAAAGCCAGAAGGTCCCTAATGCC
AAACCGTAAACCATTGGAAGCATTGGAGAACAATCCTCTGAATGGTTCAC
CGAAGCGTAAAGGAAGCGATAGTGTATATAAAGAATGTTCAGCACCTCCC
GATAAAGTGAAGAAACGTAACAAATCTTCTGTATCGACACCATCAAGTCA
AGCGATGCATCGACGTTTCAGTACTCAACAAGCAGTCAACAAACTTTTAG
ACTCAGACGACGAGGATCTAGGTAGCCTGTCTGACAgctcaaaatcttca
atcaGTACACAGTCTAGTGTCAAATCAAACGCAAGCGGTCGTTCCAACGC
ATCTTCGAAAAGCTCAAAACGTTCGAAGAAAACTCAATCCGTTACAACAA
CCAAgatcaaaaataaagaagaaaacatcAGAACAGAAAATTCAACCATT
GCCACTAGACGAAAAAGCTGTATGCCAGCCTTTGAAGCAAAACAACCACC
TGCAGTGGCTAGAGTGACACGTTCAGCTATTAAACTGCAGCCTACGCCGA
AGTCTACTTCAAAACAGACTAAGAAACGTAACAAGAATTTAACAAGTCAT
GAAGTGATGGTGAAAATTGAACAAATGAATCTGGTGGATGAAAAATCACG
ATTGAATTCAGATGTCTTCGATTTTGATAATGATGAACAGGTACTCAACA
AGCAGTCAACAAACTTTTAGACTCAGACGACGAGGATCTAGGTAGCCTGT
CTGACAgctcaaaatcttcaatcaGTACACAGTCTAGTGTCAAATCAAAC
GCAAGCGGTCGTTCCAACGCATCTTCGAAAAGCTCAAAACGTTCGAAGAA
AACTCAATCCGTTACAACAACCAAgatcaaaaataaagaagaaaacatcA
GAACAGAAAATTCAACCATTGCCACTAGACGAAAAAGCTGTATGCCAGCC
TTTGAAGCAAAACAACCACCTGCAGTGGCTAGAGTGACACGTTCAGCTAT
TAAACTGCAGCCTACGCCGAAGTCTACTTCAAAACAGACTAAGAAACGTA
ACAAGAATTTAACAAGTCATGAAGTGATGGTGAAAATTGAACAAATGAAT
CTGGTGGATGAAAAATCACGATTGAATTCAGATGTCTTCGATTTTGATAA
TGATGAACAGGAGGACAAGGCGCCGATATCCTTTGTCACACGATCTGGTC
GGAAAGCGAAGACCACGAACTCGAATGTCTCAAAACGAGAATTGTCTACA
CGAAGTCATAACAAGGAAGATGATGATTTTGTAAATGAAAGTGGTGAGTC
GTCAGGTGAAGaagctgaaatcgaaagtgaaagtgacgGAGACATCAGTA
ATTCTGATGAGGACAAGGCGCCGATATCCTTTGTCACACGATCTGGTCGG
AAAGCGAAGACCACGAACTCGAATGTCTCAAAACGAGAATTGTCTACACG
AAGTCATAACAAGGAAGATGATGATTTTGTAAATGAAAGTGGTGAGTCGT
CAGGTGAAGaagctgaaatcgaaagtgaaagtgacgGAGACATCAGTAAT
TCTGAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107_pilon | genome | sc0000107_pilon:104873..112507 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1366-1437:7564 |
| Aaloc | 1342-1359:7546 |
| Aaloc | 1231-1338:7438 |
| Aaloc | 763-1230:5732 |
| Aaloc | 544-759:5175 |
| Aaloc | 469-540:4791 |
| Aaloc | 397-465:3457 |
| Aaloc | 316-393:2599 |
| Aaloc | 109-312:1097 |
| Aaloc | 1-105:1 |
|
