XLOC_036821 (mRNA) -

Overview
NameXLOC_036821
Unique NameXLOC_036821
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000154_pilon:658231..666281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036821 ID=XLOC_036821|Name=XLOC_036821|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8051bp|location=Sequence derived from alignment at sc0000154_pilon:658231..666281+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGGGTGTTCTGTTCTATTCTGTTGAGAGTAGAGACAACAGAACGCGCAT CGCCAAACGTTCAGCTAGCGTTTACAGCGTGGAAGGCTGCTTCAGGTAAG ATACTTCTCCCGAGTCGcatttaaagcccgaagggctagatgtcgtgctt tgacAGAAAAGTGTGTTGAGGCTagataggaaatcctacctaggtcacgt gacattacacaAGATTTTCAAcacttgaccaataagaagcttcgcgggct ttcaaaaacaatagcagcattttttgcgatatttttttttacttggaaga tcttaaagcacgacatctagcccttcgggttttacagaaatctgtggtat TATGTCATTACACGTACACCCCTTTATCAGTATTCTTGCTTTATCTTTGA AGTAttactttttgccaccgcaggaagcctaaagcttccgaggatggcat tcatagcttcactcgtgagggaaagttgggaaaacatctcataattttgc gcgcgcgtttcagtattttagttccgcttagcggaacattatcaattaac ggttatttgatttcccggaatgaagagcgataagccgtgttttacaggat agctcttttttagcttgcgcggcggacgtttgtttcttcctatcgtgtcg gagctttcaaacaatgtcaattgaattatctggtatttcttctattgact atgtttcaaacgatcagccgatggctctggctttaggtataaggtaatgt cagcgataaaaaaggaaagttggtggacctgatgtgatggtggcagacat cttgaatttctccctgtttctttaaatctgttttattccagttattagca cagtccagtagtccaatcgcactacttttctataaacccaacaatccagt gtgagtttgctgaaaggaaaactaaacaatttgaatcctttttagacatt gagattgatttatattttccagcgaaacagagcacagactgacagaacaa cagtctgacagttatttatatagttttttccatcatcgttctaacactat tgatacagaacagcacacagctgacaattaaaagaatttttgaaactgaa ctaaagtataaaacaaggcgccctataaaagggaaattccataaaggaaa gtttgcattttgcaaaaatctatatatacagtagttgacactctctaatt caaatttcaagggattctcatcgaataccacagcatattgaatattgaga aagtctcccaaatccctaaagtaaatattgaattatagagTAACACGGGA AGAAGAAGGCGAAGCGAAGGTTGCTTATTGCGATTGGTTTTTGAACGTCG AATCAGTACAATAACCGAAgatcttgctgaaaatttatataagttttttg gaagaaatctttgatatttgcaatatttgaggagtcaaattttgagtttc taatttgaacgcaacaaaatcgaacatttgaatttcaaaatatctggcat tttttttgttactagaaatcaaataagagagtggtttttcaaaaccttta aagtgacttcaaatttttatccaaaacgggcttatcaaatagtagaacgt caaattagacagtgtcaactgtaattacattttttgctttttgctcctaa aataatttgaagatttttcacagtatggcagaggaagactttgcgattaa tctagacactgcattgaatgttgcacatttccgaaattcaagcaggacaa ctggcagtcgtacctattcttgcgctgttgattgctttcttgaaatatgt taccgcttgcttcttccagaaatgaaagctaaagtatcatatgaaaaatc aagtgatttttttaagctgcttcaattaagtggatcaatggaaatttcac ttgaagattacgatatgaaaagtaatgcttttcgactgctggatgaaatt agggaaccggtatggtctaagattattgaaaaaattgtggtacctttgtg agaagaaatagcgacgcagagtttcaagagatttttggaagtaatatttt caaagaattatcagaagaagagagacatgtttttgaaacaagttttgtaA TTCAGGGTACTTGTAATAGTTGTGGTAGTGAGAAGGAACAAAGAGAAACG GGTAGCATTGTCAGTCTTCTTTCGCATTTTTTATATCCAGAGATTTTAGT TGATGCAAGTTTGTGGCCAAACTGTGTATCAAATTCTCTTAATCCAAGCT CAGAAATTAATTGTGATTCTTGCTCTGTCAACATACCAGCACAGATTCAA GTTGTCAATTTGCCTATTTTTCTTCTTATAGAACTCTGTACAACAGTATG TATAAAcaattgtagattttttgagGAGATTATAGTAAAAGAAAATAGCT ACACATTACATGCCATTGTAAGGAATTGTGGTGCCCATTTTGCATGTGGT ATATTTATTGAGAATAAATGGATTTACATTGAtgatttaaatcctgaaaa aatttgttttcaaaacattaatgaaatgttttctgaaaacaaaGGAGGTT GGTTTTTTGCCTTTTATAGAAAATCTGATTctgaaaaaattgactttgtt atAGATACTACTAACCCTCTTAACACAGAATTGTCTATCAATAATGAAGA AAATGAGATCaaaaaaaCATATCctaatcgaaagagaaatccaATAAACT ATGAAGGTCTTTGCAGTACAAgcaacaaaaaaagtaaatttgatgattta tttgagaaaatcaaccaaaaggttaaaattttgaaacgaaaggaagaaaa taaaaaattttacgactcgcattctgtgaaaataaaagcaaattATGACC ATGAAAAGCGAATAGCTCATTACAACCCTGAAAAGCGAAAGCTAGTGTAT GATTCTAATAAGcgaaaagaacgatacaatccaaaagagcgaaaagaaag atacaatccaaaacaacgaaaagaaatgtacaatttaaacaagcaaaaat taaattcacagTCTGAAGAAAAGAAAGTCAACTACAATATATGtagtgaa aatatgaaaaaatttcagcAGTCAATGAAGTTTATTATGGTTCAATGTCA AACATGTTTTGAAACTTGGCCTATCAAAAGCACGTTAAAGTCAGTTTGTA ATTTTAATTGTACTCGCTGCAAGAGAGATAAAGGGACTCCaaaaaaaTTC AGTGCTGATAATAATATGAAACCAAGTCCTGTCCCAGAATCACTCAAAGG TCTAACACAAATTGAAGAAATGCTTATAGCTAGAGCCTTTCCTGTAATGC AAGTATACACCCGCCCAAGGGGAGGTCAGAGAGCTTATAAAGGTCATGTT TTGAATCTGCCTCACAATGTACAAAAAATTGCAGATGTACTTCCAAGAGA GCCCTCTGAAATTCCTATAgtgatttttaaaatgaatgGGAAAAATAATA CCTCAAAGGAACTTGTTGTTCGACGTGAGAAAATTCTACAGGCATTATTG TGGTTAACTGGTAAAAATGGACAAGGTGAACCTAACaactttttgccacc gcaggaagcctaaagcttccgaggatggcattcatagcttcacgcataag gaagttgggcaaacatctcataattttgcgcgcgtttttcagtattttag ttccggttaaatggtgtaccggtaacattcttagcttgactgtatttcta ttgttttatcatcattaaaaacacttttccggatttgttttgatctgatt acccattttcaaagctctttatgtctttttttattacctcagggagtcga attaagggaaattcccgtattaaaccacaagtagttattaaccgctctga gcaacccaaattaaaaattttcaacctttcaaaaacttgtcgtttgactt ttacattaaaatggcagtttagtacagtagcgtttagtatgatataaaca aaccattatataccattattttggtaataaaagagataacaaaaaaaaaa cagataaataactttatcttatctctataagaagatatctatgagatgga cacaaattgctaatatttgtagactaaattttgcttcagatgagatgcca ttctaacagaagtaacggctatcagtaacatttctttccaaattcaacaa cttatcttctgcggtggcactttaatgaaaattatggctagtataATTAC TGAGGCCTTAAGTTGCACCTTTCAACACGCCATCAAGTGAAATATTTGTT CTcatcaagaaaatgaaaaactagcCTGAATCAATAGCCTAAATTTTTTC CTTCTCATGTACCACACCAATTTTGAGCACAAGTCAAGAGCAGGAAAAAG AGCCCCAATTACGCCTTCGCTCAAAAACAAATGGTGGCCTCATCACTTTT TTCTAAATCTACCGATACttcaaaataaagatttaaGGAAAGCCTATTAA ATATCATCAATCTATTTTTGGACTGAATTCTATTTTTATGCGATGGCGCA ATAGAATATGTAAATGTGATTTATTTGGTAACAAATTTACCGTCAAACCG AGTGTTCAAGGGCGTGAGCGTACCTATACGTATATACCTACCtagaattt ttgactgaagatcgtgacgaaaagttgcgtgaaactttgagtatcaaaca attcttatctcaacttcaatttattgtgtACGTATATACCtataaatttt ttcatttactgTAAGGTCCCGAACAAACGCAAACTCCCCAGTTACTAATT GCTCTAGATAGCTTGGTTTTGGTATATAATTATGGTTGGGGTTTTGAGAG GTAAAATGTTCGACATCCTAATAgtaagctagacgactaattcaaacata gtagaaataaagcaaaaacgTAGGTAGGACAtctttatttttccaaacag tttgggaattgaaaaaagcgtcaaaaatcgatgttggaaattacatttta gtGAAATTTAGACTCCTCCTTGGAAAACTAgattttttgggtcggaaaat gtgtttctccaaacagtctggaaaacgttaaaaattcaTGTAGAAATAAC AGAGAGATTGACCgagagccatcgagcctaggctagcgagtgactgttca caaaaacaaaaaccttgtttaattaagatctctttttccacatctctgtc atcactttttggattcaacctggatttttgaaaattccaaccttttttag ttttgattttggctttattcaacctggatttttgaaaattccaagtttgt ttactttggaTTGTAgctttttcaacctggatttttgaaaattccaagcc atggaaaatgcaaaatttccattCTTGGAGAGTGTCCCAAGtttccaggt tggattttccattggattttttctattttccaactaagaaatcttgaaat ttctattaataccttggaaatcgaaaattttttcctgtgataatcgtatt atcatatgacgcctatactactgtattacacgctaAGTTTCCTTCTTCAC TGATGGGATACTGATTAAGTATTATTCGTGATATAAAGCTCAAACTCATT TTCTTTGCCAGGATGTTTCCACCGGGTTCTTTGGATTCATCAGACATGGG AATTCATCAAAGTTCCAATATCAGATGTCAAGAAATTTGTCGTGATAAAG GATATGTGCTCGCCGCTACTAAAGGTAAAACGTTGATTATTTAAGTCTTA TATCACACTTAAACTTCATGGTCTCAGGGGGATATCCAGAAAGGTATTCT agcatgaaacaaaaaaatgattatCATATAATTCACATTGACCCTTTTAG AACCCTTTTTTGAGACTTAGTGATTTTGATAATCTGCCAGGGATTTTCAG ATAAGTTGGTATTTCCATTAACCCAATTTTACAGAAGTGCTCCCCAAGAC CCTACAGAGGTACAGTAATCGATGAAATTGTACATGTATACAGTACTTGT ATGATAACATACGTCTTACGAACTTTGAATTACTTACAGGTCAGATGTGT CATTGTTCGAATATTTATCCACGAGGaaaaaaaGTAGTCGATCAAGAATG TTCTACAAGATGTCGTTCATATACACCATGTCATGATGTCCAGAGCTGTT GTGGAGGTCCCAACGCATACTCTGTTAGCGTGGTAGGAGATATTGACGTG GCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAACGAATGTGGG ATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACGATGCTGATT GGAGATCTTCTATTGAGAATGGAGGTTTGAGTTTTATTAAAAGCATTCTT TTCCAGCTggaacacaacgttgtttcaacgtttatctaacattcacaacg tccatataacgttaaatgaacgttgaaacaacgttgtgtgccagctggga ttatttaaataaaattttcaaaatttaaaatcataatGTTTGCTGCTGAT GTCttcaagtttctttttaaaataaaagaatcgACTTTGTTACTAATAGA CAAATATTTGATTCAAGTTTGAAGGAAGTTAGATGTTATCAATACTgaag aaattaaatttcttaGTTTTGATGACTTCCTCAAtcagattttcgcaaaa atgcGGATAAATAACAACTAGGGTATACACCCAAGGATTTGCATCAAATT ACTCTTCATTTTCAGTCTATTATTTGCTCATTTTCTGTTGTGTTCTAAAA CTTATGGTAATATTCACGTTTTTGAGACATACCATAAATTAATCAAGCTA CATTTAGTTAAATAGCAATAATACCAAGTCAActgaaatttttacatttt tcaggcTGGTCGAAATGCAATAAGGAACATTACATCAATGGACTATCAAG AGAAAACCAATACAGTGGATCGTCGTCAGATCCTCTTGGAAGAATCGATT ATGCAAGTTGCCAAAAGGAGCCTGGAGATCAAGTTTGCAACTATCAATTC GCTTTTCTTTTCACCAGTGGAACGGTTtggaaaacttgtaaacaagGATA CTTTATGTCTGGTGTCTTCACTCAACCAGGGGCTCAAAAAATCTCCGATC TTGCCCAATTCCATTGTTGCCGACccaagaaacaaaaagaacaatGGGGA CATTGTTATAATCACGATGTATCTTCATCCTTAGATAATAAGGGTTGGTC TACATGTCGATCTGGATATTTCATGGCTGGAATGGAACGAGGTTATTGTG ATGGTTTACACTGcgtcaatcaaatcaaatgttGTCAAATGGAAAGCCTG GCTGTCAGTGAAAACCCAAAACTGTCCATCAAGCTCAAGGACACCACAAA CAAAGGACAATTGAAAGAATGCACCATGGAAGCAAGAGATCTTACACCTG AAAGTAAAACCTATGAATGCAAATCTCTCAGTAATTTGAAAGATGTGGCA AGTTTGGAATCTGTATCTTTCAAGATGGAAGACGAATCAGATCCTTTGAC TTCGAAACCCGAACGTGTCAAAAATTATATCCCTGTTATCTGTATGCCAG CTTCTTCAGACTACGAGTGCAAGAAAGTCTTAGCTGTTTCAGTGGCACAA TCCAGTACTTTGACTATCGGCTCTGGCTTTTCCATGACCACGACATTTGG TGTGAAAACAGCTTTCGAAGCGAATTGGTTTGGGCAGAAATTCAAGAATG AAATCTCATTTGAATTATCAGCATCTTCTTCTCTCAATATTGGTACAAGT AAAACAACAACCAAAACGGTAACCGATACAACATGGGTGACCGTTAAGGT TCCAGCTAACCAGCAAGTTATGATTGATCTCCTTCGACAGAAAATCGACA TCGTTTACAAATGGAGTGGCGTTTTTCGTCTTCTTGGTAAATACAAAATG AATTGGCAGACAGCAAAGAAAGAAGAAACGAAACAAGATATCACAACAGT ATTGAGTGGTCCTGATCGTGAGATGTATGCTTTCGGTAAATGGAAATATC CCAATACTGACGTCTTACAAGTCGTGGTGACTGATAAATATGGTGAGAAG AAAGGATGTGAACATGCAACAGGTGTTGATAAAAACTGTCTCATTGAttg a

Coding sequence (CDS) from alignment at sc0000154_pilon:658231..666281+

>XLOC_036821 ID=XLOC_036821|Name=XLOC_036821|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3480bp|location=Sequence derived from alignment at sc0000154_pilon:658231..666281+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGGGTGTTCTGTTCTATTCTGTTGAGAGTAGAGACAACAGAACGCGCAT
CGCCAAACGTTCAGCTAGCGTTTACAGCGTGGAAGGCTGCTTCAGTTGGG
TGTTCTGTTCTATTCTGTTGAGAGTAGAGACAACAGAACGCGCATCGCCA
AACGTTCAGCTAGCGTTTACAGCGTGGAAGGCTGCTTCAGGATGTTTCCA
CCGGGTTCTTTGGATTCATCAGACATGGGAATTCATCAAAGTTCCAATAT
CAGATGTCAAGAAATTTGTCGTGATAAAGGATATGTGCTCGCCGCTACTA
AAGGATGTTTCCACCGGGTTCTTTGGATTCATCAGACATGGGAATTCATC
AAAGTTCCAATATCAGATGTCAAGAAATTTGTCGTGATAAAGGATATGTG
CTCGCCGCTACTAAAGGTCAGATGTGTCATTGTTCGAATATTTATCCACG
AGGaaaaaaaGTAGTCGATCAAGAATGTTCTACAAGATGTCGTTCATATA
CACCATGTCATGATGTCCAGAGCTGTTGTGGAGGTCCCAACGCATACTCT
GTTAGCGTGGTAGGAGATATTGACGTGGCCAAACAAACGTTGAGAAGACT
GGCCAATAAATGGCAAACGAATGTGGGATATCATAATTCAATGTTGAGAC
ATGTTGGATTACTTTACGATGCTGATTGGAGATCTTCTATTGAGAATGGA
GGTCAGATGTGTCATTGTTCGAATATTTATCCACGAGGaaaaaaaGTAGT
CGATCAAGAATGTTCTACAAGATGTCGTTCATATACACCATGTCATGATG
TCCAGAGCTGTTGTGGAGGTCCCAACGCATACTCTGTTAGCGTGGTAGGA
GATATTGACGTGGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCA
AACGAATGTGGGATATCATAATTCAATGTTGAGACATGTTGGATTACTTT
ACGATGCTGATTGGAGATCTTCTATTGAGAATGGAGgcTGGTCGAAATGC
AATAAGGAACATTACATCAATGGACTATCAAGAGAAAACCAATACAGTGG
ATCGTCGTCAGATCCTCTTGGAAGAATCGATTATGCAAGTTGCCAAAAGG
AGCCTGGAGATCAAGTTTGCAACTATCAATTCGCTTTTCTTTTCACCAGT
GGAACGGTTtggaaaacttgtaaacaagGATACTTTATGTCTGGTGTCTT
CACTCAACCAGGGGCTCAAAAAATCTCCGATCTTGCCCAATTCCATTGTT
GCCGACccaagaaacaaaaagaacaatGGGGACATTGTTATAATCACGAT
GTATCTTCATCCTTAGATAATAAGGGTTGGTCTACATGTCGATCTGGATA
TTTCATGGCTGGAATGGAACGAGGTTATTGTGATGGTTTACACTGcgtca
atcaaatcaaatgttGTCAAATGGAAAGCCTGGCTGTCAGTGAAAACCCA
AAACTGTCCATCAAGCTCAAGGACACCACAAACAAAGGACAATTGAAAGA
ATGCACCATGGAAGCAAGAGATCTTACACCTGAAAGTAAAACCTATGAAT
GCAAATCTCTCAGTAATTTGAAAGATGTGGCAAGTTTGGAATCTGTATCT
TTCAAGATGGAAGACGAATCAGATCCTTTGACTTCGAAACCCGAACGTGT
CAAAAATTATATCCCTGTTATCTGTATGCCAGCTTCTTCAGACTACGAGT
GCAAGAAAGTCTTAGCTGTTTCAGTGGCACAATCCAGTACTTTGACTATC
GGCTCTGGCTTTTCCATGACCACGACATTTGGTGTGAAAACAGCTTTCGA
AGCGAATTGGTTTGGGCAGAAATTCAAGAATGAAATCTCATTTGAATTAT
CAGCATCTTCTTCTCTCAATATTGGTACAAGTAAAACAACAACCAAAACG
GTAACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAACCAGCAAGT
TATGATTGATCTCCTTCGACAGAAAATCGACATCGTTTACAAATGGAGTG
GCGTTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAGACAGCAAAG
AAAGAAGAAACGAAACAAGATATCACAACAGTATTGAGTGGTCCTGATCG
TGAGATGTATGCTTTCGGTAAATGGAAATATCCCAATACTGACGTCTTAC
AAGTCGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGTGAACATGCA
ACAGGTGTTGATAAAAACTGTCTCATTGAttgagcTGGTCGAAATGCAAT
AAGGAACATTACATCAATGGACTATCAAGAGAAAACCAATACAGTGGATC
GTCGTCAGATCCTCTTGGAAGAATCGATTATGCAAGTTGCCAAAAGGAGC
CTGGAGATCAAGTTTGCAACTATCAATTCGCTTTTCTTTTCACCAGTGGA
ACGGTTtggaaaacttgtaaacaagGATACTTTATGTCTGGTGTCTTCAC
TCAACCAGGGGCTCAAAAAATCTCCGATCTTGCCCAATTCCATTGTTGCC
GACccaagaaacaaaaagaacaatGGGGACATTGTTATAATCACGATGTA
TCTTCATCCTTAGATAATAAGGGTTGGTCTACATGTCGATCTGGATATTT
CATGGCTGGAATGGAACGAGGTTATTGTGATGGTTTACACTGcgtcaatc
aaatcaaatgttGTCAAATGGAAAGCCTGGCTGTCAGTGAAAACCCAAAA
CTGTCCATCAAGCTCAAGGACACCACAAACAAAGGACAATTGAAAGAATG
CACCATGGAAGCAAGAGATCTTACACCTGAAAGTAAAACCTATGAATGCA
AATCTCTCAGTAATTTGAAAGATGTGGCAAGTTTGGAATCTGTATCTTTC
AAGATGGAAGACGAATCAGATCCTTTGACTTCGAAACCCGAACGTGTCAA
AAATTATATCCCTGTTATCTGTATGCCAGCTTCTTCAGACTACGAGTGCA
AGAAAGTCTTAGCTGTTTCAGTGGCACAATCCAGTACTTTGACTATCGGC
TCTGGCTTTTCCATGACCACGACATTTGGTGTGAAAACAGCTTTCGAAGC
GAATTGGTTTGGGCAGAAATTCAAGAATGAAATCTCATTTGAATTATCAG
CATCTTCTTCTCTCAATATTGGTACAAGTAAAACAACAACCAAAACGGTA
ACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAACCAGCAAGTTAT
GATTGATCTCCTTCGACAGAAAATCGACATCGTTTACAAATGGAGTGGCG
TTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAGACAGCAAAGAAA
GAAGAAACGAAACAAGATATCACAACAGTATTGAGTGGTCCTGATCGTGA
GATGTATGCTTTCGGTAAATGGAAATATCCCAATACTGACGTCTTACAAG
TCGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGTGAACATGCAACA
GGTGTTGATAAAAACTGTCTCATTGAttga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_036821XLOC_036821-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000154_pilongenomesc0000154_pilon:658231..666281 +
Properties
Property NameValue
Aaloc496-1740:6807
Aaloc211-492:5992
Aaloc97-207:5563
Aaloc1-93:1