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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000338_pilon:240635..246322+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_036689 ID=XLOC_036689|Name=XLOC_036689|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5688bp|location=Sequence derived from alignment at sc0000338_pilon:240635..246322+ (Clytia hemisphaerica_ch_hm2_pilon)
AACGCGTACGCGCGAAAAACACATTGGCTGACACCACTACCATGGAAAcc
aaactttaaattcttaTTTGACCAATCTTATATGAAAGATATCAAATTTA
AACATGCTGTGCAGTACGATTCGCTTTCCAAAGAAGGAGAAACCTTGAAC
GCAGGCAATAATTTTACGTACAGTTTACTAAACATGTTATCTCAGCTGGA
TCTAAGGCTAGCTACAATAGAAGGGAACCTGGGCTCAGGTAAAACTAGCC
TGATTTATAGATTCTTAaaagactgggttcgagtttcaacaaaactgaaa
aatagCGGGAAAGTTTTCTTGCATTGTGATCTAACCAATATTGATGTAGA
AAACATGAAGCCGAAACTGGATTTGAATTCCGTTATGGATTTATTCGGAT
TACCGGGTTACCTTTATGATGATTTTATGTGGCTAATCGAGAAAAATAGC
GATAAAATTATTGTATTAATCGAGACACACAACATAAGGGCATCATCGAG
ActtgttttcaaacttttctataAAGTATTCCCAACCGGGAAATTCGTTA
TATTTCACAGACCAGATAAGACAAACTCATACTTAGACGTACCGATCTCA
CAGGAATATCGTTATCTATTACGGCGCCGAGTaaagttgaaaattcaaaa
ctacGACATCCGACAGACTGTGAATTTAGTAAAGCAGATTTCATCGAATT
CTATAATGTTCCAAAACTTTCGTGACGCTTTATACGAATACTTGTCTTTA
TCTAGACTGTGTTCCAATCCCTTTATATTGATGGTTGTTCTAAATATTTA
TAAAGAAACAAAGAGTATCAAGTTTCTGGAAAACAGGCTATCGCTACTTC
GGAAGATCCTTACAGCTGTGTGGCGACGATATGCGTAAGTTGCTTATATT
GGTTGACCAGCAATAGCTCCTCTATTGAGGAGGAATAAGaatcgacaaaa
atattcaatcgTAAAGGCTTGGGGAAACGAGATTTGTTTTTCGCGTTGAT
ACAATGCAActtgctccatcccaccaacctgaaacactttctcgtgtctc
cgacccatttttctttctaccaataaaagtgaagtCTCACTTTTGTCCTA
TGAAACAAAAATGAAACCATGAGACACACACTTTTTTCTTGtcttggtgg
gatggagcatgttgcattgcaccaacgcaaaaaacttctcgtgtccccaa
gccttaaccCCACAAAATCATGACAAAAATATATTCTTGGCACACCCGGC
AGAGCATAATATTACAGATTAGTATAGACCcgctttttatctttgttttg
attttcaggaATACAACAGATCAATACGATGCTGACATCATCCAACATAT
CGATAGCTTGCTCATCTCTTTCTCCGATGTTGCCATAGAGACATATACAA
CAAACTGTCACTTATCTGAGGATGTTATTTCTGAAAATGAACATTCTATT
CTTTTACTGGATTCCGGTCTGTTAATTGAACACCGGCTACCAACGAAAAA
TACAGACTCAATTGAACGCGTATACACATTTTTTGATCCGCTGTTACACG
AGTACACGTGCGCTTTAAAGTATTCGAGGCAAATTACAGAACAGCCTGAT
ACCATAGAGGAGATTGGGAATACATTATTTTCACCTGAATGGAAAGATGT
GTGTCTACTAGTAGCTGGTCTATTAGGGAAACATTTTAGTATTCTGATTA
AAGAGATAAATTTTGATTATATGGAGGATTCAGCACTCCATATTTTATCA
GATGCTTTGAATCAATGTCAATGTCCGAGACTTTGTTTAAGAGATGTTGA
TCATATTCCTGTACCTCAATCTATCGATTTTTCAGAGATGCCAATAACGG
CTTCCACACTTAAAGGTAAGTGCTTTAACCCTTTGCGTTCCATGCCAAAA
ATACTGATGCCTAGATTTATCGTCACCTCTCTCCGTGCCAAAAATACTGA
TAACGAGGTAACTCACAATTACGTGGTGTTCCAAGTATACCGCGGGTTTC
AAAAAACTTTCGTAAGTGCTTTAATATTAGAAGCATCGCAGCGGTTTACG
GAAAATTAGCGGCGCTAGAATTGGAAGCAGCCTTACATCTGTAAAAACCT
CCACCACTGCTTATTCCGGCCACCAAAGCTAACAtctgttttaaaattta
tccctcctcctaaactattccctttgtAGTgaccttgtgtagacgatagg
attaTCTAAATACTATCAgaaagttttgtaatttttcaattgACTTACCT
TTGCTTGGAAAATTgttatttaaaatttcatcttcCTAgggttttttcag
ttttttacgACATTAAATCTAGCTGCTGTCCAGTGAAATATAAGACCCCT
AAGCTAGAGATGAAAAACGTTTACTCATaacattttcattcaattttaca
ACAATATAGGTTTACAAACTTTACTTGACTGGTCTCACGAGTCTCAAAAC
GTTGAAAACCAAAATGGCGGATATCAAAGTAAACGGGACAGTTGGAACAC
CAAACaaataaacattcaaaaaacagCTTTAGAACGTTTCATGATGAAAC
ACCAAAGCCGGCAAGACCTCAACGACAATAAATTATATTCTTCATCCAAC
ACAATGAATTATGATATCCGTAACAATAAATCTTCTTGTCAAAACATGTC
AATACCTTTGAAACAACGATCAGAATCTTCCACGTCCTGGTATAACAGAT
ATAGTAGTTGTCCAGATTTTAACCATGCATTTGGTAGTTTGTTGACATTG
AATACTTCGTTTGATGTTGACGACTCTGGTGAGGATTTGCTGATTGAACA
AAGTTGGGGAAGTCATTATCAAGCACatttgaataaacaaaaatcgatAG
CCAATCTTAATTCTCTTGGTAAGTGTTCACCTCTGTGTTACAGACCCACT
GGACCTGGCTGAGGTCACTGGAAAATGTGGtgaaaatttcgtccccggtg
ggaaaataccctggaattttagccccactgggaaattggcTTTGATTTCA
TCTACATTCgatattcaatgtttaaaaattgcattccaaAAGCATccaca
ctggattttttaaccctggaacaatagaatttctatccacattggaattt
caatatgaatatccccactgaggaaaaaagttccaccggggctgtgagat
aggggtgtaaGTGTGTGCGATAAAATCCGAACTCCAACTCTCTCCCTTAA
TTCACTATTTTTATCCTGATAGTGAAAGGATCACTATTGTATCACGTCCA
TCcatccatcagtaaaatcaaaaagctgGTACTAGTGGCTCTGGGCGTCT
CTACGAGATTGTGTCGAGCTTAAATGACCATCGAGCTTATACGGAAATCT
GCGCAATAGACTTGTTTTACAGACTGAGTTGAACccagtaaaaataaaat
catccaaaaaaatcaccccttacgcagctggcacacaacattgtttcaac
gttaatataacgttatatggacgttgtgaacgttagataaacgttgaaac
aacgttgtgtatgAGATGGGTTGAGGAAAATACTCTGCGATCAATCCTGT
ACCACTTGCAACACTTTTTGACTTTGATGAGGTGGGCGTGATACAACcat
gagcgctatcagaataaAAAACGACTGATATCTCACTGGGTTAAATTCGA
ATCCATTCCTGTGGTCCGCTTTTTGATTCTAATAGCACTATACAATTCGT
ATAACTTTTAATTAATTCACTTTTTCCAGGTACTCTCCGACAAAACCAAT
CCCTTCCATCGAGAACCAATAGTTTCACTGGATCACTATACCAACAAAAT
GAAAGTGTTCTTGGATCTTCATATTCACTTTATTCTTCACTTGATTCTTT
ATTAAACGGtggagaaaagaaaaatgattacATCAAAGATCTCAGATTGA
AAGGTATATCATATATTCGATATTTCAAATCTTATTATCAGTAAAAAGTA
ATTTAGCTCGCATAATTTTCTGATCATCAGGACAAACCTCTTTAAGAGAA
GGAGACAAATCTAGATTAGATTTAGTTCAACTTCGTTTCCTGTCATGGCG
TCCTAAATTAATacaatttagaacgccatgttcCCTGTGTATTACCAGCT
TTTTCTGTGCTTACTGATGGCGTCTATCAGTAACCtaaaaataaagcctg
ggatacatgAGGACGAGGTTGGATTTAGTTTTGCTTAACCCACCTGGGTT
TCAGATAAAACTTAAAAGTCAGATTTAGAATATAATTTATCGCCGGGTTT
CGAAAAATGTAGGACGTGAAAACAAAAAGAGTGCTAAGTCCCAGAGGCAG
TTCAAATCTTAAGGCtccactttttcttgcttaagaAAGGTTGAAGGTTC
CTCTCTAGCCGTCAGCTTTAAACTCTTAGGTATCGGGTATTGGCCTCAGT
CGGtatgtgggttcgatccccgttTTTCTAATTGTCGAATGAGTAACTTA
TAGATTGGGTAAGTTTCTGGGAGCTAAGAGTATGTGTAGCACTCCACTTA
AGCATTCGACCTCCCAGGTCTAGCACAAATAAAAAAGGGAAAGACTTCCT
CATTCCCAGCTTCACTAACATCCACGgaatgaatatacttacttactaat
TATAGGATCATGCATCGGGAATCGAACATACGCGTCCCTCGTCACTTTCT
TAGAAGATAATCACCTTGAACGTTTATTTCTGATGGACCAACACGAAGAA
AACCATTCAAATGCACCATTATCAATCTCTTCAAAGCTGGTCAATAAATT
CTTGGAAGCAATATCAGAGAGCTTGACAGAATTGACATTGAATTCAAATC
TTCTTGGAAGTCATTGGATTGACCATTTAGTGGCCATGATTGTGGAGAAT
TCAAACATCAGTTATTTGAGGTAAGATCGAAATCGGCTATTctagaaata
gtctgtaccccctatgttgaggtcCAGAatggtctgaaaaataaaaaatc
cagggtggtctggttttttgaatgataaaatccagggtggtcagtaaaac
gaggtcgaaaatccagggtggtccaaagaaatgggaGAAAGAAATTCAAG
GGGTGcctgaaaagtttgaaaaaaatggtggggtcacctttaaaaaaaaa
gatatctcctcaacatagggggtataaatcatttctggaatagcccaata
tagTCTTTCCTCAGTACGGGTGAGTTTCAACAATTTTCTCCAACTTGATa
atggctgaaattttgaaaactatttttttccgAATGTACAATTAACTTTA
ACTAGCTTTAAGTGCATTCTTTCATATGGAAACCAAtccgggggggtact
taggaaaATGAGGAtgcggtatgtgccgcccttaagggcaccttttttgg
atttccaaagtcctgctaagggtcggaaaaatcagaaaattaaatctcag
tcccactaagggtcgaagaaataggaaaatttcaacttcttACCCCTGcc
ggaaagatcaaaatttggtcaaaatttaccGGTAAGGGTCCGAAGGTCGA
AAGTTGGGCGGCAACCCCCCGTCAGTTCACAACACTAGTACCCCCTTCCT
AGGGATGGACTTATTTAgataaattgaaaatatcttaacaatttattttt
cagtGTGGCAGTGACTGACCTTGAACAACTAAATGTagaaaatgctttaa
aattgACCAAAGCTTTTCAAAGAAACACAGCATTGCAA Coding sequence (CDS) from alignment at sc0000338_pilon:240635..246322+ >XLOC_036689 ID=XLOC_036689|Name=XLOC_036689|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4848bp|location=Sequence derived from alignment at sc0000338_pilon:240635..246322+ (Clytia hemisphaerica_ch_hm2_pilon)
AACGCGTACGCGCGAAAAACACATTGGCTGACACCACTACCATGGAAAcc
aaactttaaattcttaTTTGACCAATCTTATATGAAAGATATCAAATTTA
AACATGCTGTGCAGTACGATTCGCTTTCCAAAGAAGGAGAAACCTTGAAC
GCAGGCAATAATTTTACGTACAGTTTACTAAACATGTTATCTCAGCTGGA
TCTAAGGCTAGCTACAATAGAAGGGAACCTGGGCTCAGGTAAAACTAGCC
TGATTTATAGATTCTTAaaagactgggttcgagtttcaacaaaactgaaa
aatagCGGGAAAGTTTTCTTGCATTGTGATCTAACCAATATTGATGTAGA
AAACATGAAGCCGAAACTGGATTTGAATTCCGTTATGGATTTATTCGGAT
TACCGGGTTACCTTTATGATGATTTTATGTGGCTAATCGAGAAAAATAGC
GATAAAATTATTGTATTAATCGAGACACACAACATAAGGGCATCATCGAG
ActtgttttcaaacttttctataAAGTATTCCCAACCGGGAAATTCGTTA
TATTTCACAGACCAGATAAGACAAACTCATACTTAGACGTACCGATCTCA
CAGGAATATCGTTATCTATTACGGCGCCGAGTaaagttgaaaattcaaaa
ctacGACATCCGACAGACTGTGAATTTAGTAAAGCAGATTTCATCGAATT
CTATAATGTTCCAAAACTTTCGTGACGCTTTATACGAATACTTGTCTTTA
TCTAGACTGTGTTCCAATCCCTTTATATTGATGGTTGTTCTAAATATTTA
TAAAGAAACAAAGAGTATCAAGTTTCTGGAAAACAGGCTATCGCTACTTC
GGAAGATCCTTACAGCTGTGTGGCGACGATATGCAACGCGTACGCGCGAA
AAACACATTGGCTGACACCACTACCATGGAAAccaaactttaaattctta
TTTGACCAATCTTATATGAAAGATATCAAATTTAAACATGCTGTGCAGTA
CGATTCGCTTTCCAAAGAAGGAGAAACCTTGAACGCAGGCAATAATTTTA
CGTACAGTTTACTAAACATGTTATCTCAGCTGGATCTAAGGCTAGCTACA
ATAGAAGGGAACCTGGGCTCAGGTAAAACTAGCCTGATTTATAGATTCTT
AaaagactgggttcgagtttcaacaaaactgaaaaatagCGGGAAAGTTT
TCTTGCATTGTGATCTAACCAATATTGATGTAGAAAACATGAAGCCGAAA
CTGGATTTGAATTCCGTTATGGATTTATTCGGATTACCGGGTTACCTTTA
TGATGATTTTATGTGGCTAATCGAGAAAAATAGCGATAAAATTATTGTAT
TAATCGAGACACACAACATAAGGGCATCATCGAGActtgttttcaaactt
ttctataAAGTATTCCCAACCGGGAAATTCGTTATATTTCACAGACCAGA
TAAGACAAACTCATACTTAGACGTACCGATCTCACAGGAATATCGTTATC
TATTACGGCGCCGAGTaaagttgaaaattcaaaactacGACATCCGACAG
ACTGTGAATTTAGTAAAGCAGATTTCATCGAATTCTATAATGTTCCAAAA
CTTTCGTGACGCTTTATACGAATACTTGTCTTTATCTAGACTGTGTTCCA
ATCCCTTTATATTGATGGTTGTTCTAAATATTTATAAAGAAACAAAGAGT
ATCAAGTTTCTGGAAAACAGGCTATCGCTACTTCGGAAGATCCTTACAGC
TGTGTGGCGACGATATGCgaATACAACAGATCAATACGATGCTGACATCA
TCCAACATATCGATAGCTTGCTCATCTCTTTCTCCGATGTTGCCATAGAG
ACATATACAACAAACTGTCACTTATCTGAGGATGTTATTTCTGAAAATGA
ACATTCTATTCTTTTACTGGATTCCGGTCTGTTAATTGAACACCGGCTAC
CAACGAAAAATACAGACTCAATTGAACGCGTATACACATTTTTTGATCCG
CTGTTACACGAGTACACGTGCGCTTTAAAGTATTCGAGGCAAATTACAGA
ACAGCCTGATACCATAGAGGAGATTGGGAATACATTATTTTCACCTGAAT
GGAAAGATGTGTGTCTACTAGTAGCTGGTCTATTAGGGAAACATTTTAGT
ATTCTGATTAAAGAGATAAATTTTGATTATATGGAGGATTCAGCACTCCA
TATTTTATCAGATGCTTTGAATCAATGTCAATGTCCGAGACTTTGTTTAA
GAGATGTTGATCATATTCCTGTACCTCAATCTATCGATTTTTCAGAGATG
CCAATAACGGCTTCCACACTTAAAGgaATACAACAGATCAATACGATGCT
GACATCATCCAACATATCGATAGCTTGCTCATCTCTTTCTCCGATGTTGC
CATAGAGACATATACAACAAACTGTCACTTATCTGAGGATGTTATTTCTG
AAAATGAACATTCTATTCTTTTACTGGATTCCGGTCTGTTAATTGAACAC
CGGCTACCAACGAAAAATACAGACTCAATTGAACGCGTATACACATTTTT
TGATCCGCTGTTACACGAGTACACGTGCGCTTTAAAGTATTCGAGGCAAA
TTACAGAACAGCCTGATACCATAGAGGAGATTGGGAATACATTATTTTCA
CCTGAATGGAAAGATGTGTGTCTACTAGTAGCTGGTCTATTAGGGAAACA
TTTTAGTATTCTGATTAAAGAGATAAATTTTGATTATATGGAGGATTCAG
CACTCCATATTTTATCAGATGCTTTGAATCAATGTCAATGTCCGAGACTT
TGTTTAAGAGATGTTGATCATATTCCTGTACCTCAATCTATCGATTTTTC
AGAGATGCCAATAACGGCTTCCACACTTAAAGGTTTACAAACTTTACTTG
ACTGGTCTCACGAGTCTCAAAACGTTGAAAACCAAAATGGCGGATATCAA
AGTAAACGGGACAGTTGGAACACCAAACaaataaacattcaaaaaacagC
TTTAGAACGTTTCATGATGAAACACCAAAGCCGGCAAGACCTCAACGACA
ATAAATTATATTCTTCATCCAACACAATGAATTATGATATCCGTAACAAT
AAATCTTCTTGTCAAAACATGTCAATACCTTTGAAACAACGATCAGAATC
TTCCACGTCCTGGTATAACAGATATAGTAGTTGTCCAGATTTTAACCATG
CATTTGGTAGTTTGTTGACATTGAATACTTCGTTTGATGTTGACGACTCT
GGTGAGGATTTGCTGATTGAACAAAGTTGGGGAAGTCATTATCAAGCACa
tttgaataaacaaaaatcgatAGCCAATCTTAATTCTCTTGGTTTACAAA
CTTTACTTGACTGGTCTCACGAGTCTCAAAACGTTGAAAACCAAAATGGC
GGATATCAAAGTAAACGGGACAGTTGGAACACCAAACaaataaacattca
aaaaacagCTTTAGAACGTTTCATGATGAAACACCAAAGCCGGCAAGACC
TCAACGACAATAAATTATATTCTTCATCCAACACAATGAATTATGATATC
CGTAACAATAAATCTTCTTGTCAAAACATGTCAATACCTTTGAAACAACG
ATCAGAATCTTCCACGTCCTGGTATAACAGATATAGTAGTTGTCCAGATT
TTAACCATGCATTTGGTAGTTTGTTGACATTGAATACTTCGTTTGATGTT
GACGACTCTGGTGAGGATTTGCTGATTGAACAAAGTTGGGGAAGTCATTA
TCAAGCACatttgaataaacaaaaatcgatAGCCAATCTTAATTCTCTTG
GTACTCTCCGACAAAACCAATCCCTTCCATCGAGAACCAATAGTTTCACT
GGATCACTATACCAACAAAATGAAAGTGTTCTTGGATCTTCATATTCACT
TTATTCTTCACTTGATTCTTTATTAAACGGtggagaaaagaaaaatgatt
acATCAAAGATCTCAGATTGAAAGGTACTCTCCGACAAAACCAATCCCTT
CCATCGAGAACCAATAGTTTCACTGGATCACTATACCAACAAAATGAAAG
TGTTCTTGGATCTTCATATTCACTTTATTCTTCACTTGATTCTTTATTAA
ACGGtggagaaaagaaaaatgattacATCAAAGATCTCAGATTGAAAGGA
TCATGCATCGGGAATCGAACATACGCGTCCCTCGTCACTTTCTTAGAAGA
TAATCACCTTGAACGTTTATTTCTGATGGACCAACACGAAGAAAACCATT
CAAATGCACCATTATCAATCTCTTCAAAGCTGGTCAATAAATTCTTGGAA
GCAATATCAGAGAGCTTGACAGAATTGACATTGAATTCAAATCTTCTTGG
AAGTCATTGGATTGACCATTTAGTGGCCATGATTGTGGAGAATTCAAACA
TCAGTTATTTGAGGATCATGCATCGGGAATCGAACATACGCGTCCCTCGT
CACTTTCTTAGAAGATAATCACCTTGAACGTTTATTTCTGATGGACCAAC
ACGAAGAAAACCATTCAAATGCACCATTATCAATCTCTTCAAAGCTGGTC
AATAAATTCTTGGAAGCAATATCAGAGAGCTTGACAGAATTGACATTGAA
TTCAAATCTTCTTGGAAGTCATTGGATTGACCATTTAGTGGCCATGATTG
TGGAGAATTCAAACATCAGTTATTTGAGtGTGGCAGTGACTGACCTTGAA
CAACTAAATGTagaaaatgctttaaaattgACCAAAGCTTTTCAAAGAAA
CACAGCATTGCAAtGTGGCAGTGACTGACCTTGAACAACTAAATGTagaa
aatgctttaaaattgACCAAAGCTTTTCAAAGAAACACAGCATTGCAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338_pilon | genome | sc0000338_pilon:240635..246322 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2344-2427:5605 |
| Aaloc | 2080-2340:4608 |
| Aaloc | 1906-2076:3732 |
| Aaloc | 1699-1902:2664 |
| Aaloc | 1444-1695:2412 |
| Aaloc | 886-1440:1310 |
| Aaloc | 1-882:1 |
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