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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:1561745..1566992+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_036472 ID=XLOC_036472|Name=XLOC_036472|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5248bp|location=Sequence derived from alignment at sc0000042_pilon:1561745..1566992+ (Clytia hemisphaerica_ch_hm2_pilon)
caggACTGTCGTCGTAAATACCCTCTAATAAATTGCACCTACTGTCAACT
AGAATTCCACATTTTGAAGTAAGTAAATTGCATTTACAAAGTAATATGGA
AACTTATTCATTGCTTAAAAAAGActatcaaaatttgatatttttaaact
tAGTTTTAGCACAGAAAGAGTCTCAGTGATTTTAACTGTCAACATTAAAA
GTTCAGAGACTTTAAGAAAATACAAATCCAatagaaatcaaaacatttcc
tTATTTCTTATACTTCaggaaagtcaaaggacaagcAGTATGTGGAAAAT
GTGCCCACAACTTACAAACATATGGAGAGGTATCTACTATactatttttc
acaaatttctttgcaaaattttagataGAAAGAAATCGTTTTTGTATAAG
CTTCTCTTACTGAGATTATAATACTGAAAAGTGACGTAGAGGATTGTAAT
GGATACAATAGTGAAGACATCCTATTTACAGTGTAGTTCGAACTCCTCCT
CATACAAAATGTACGGTAAACTTATATTTGGACTTTCTACCCAATGCTGG
ATGCAAGCACTTAAGTTGATAGACACCCCATGGAAGATCTTTCAAGTtaa
gtatgtgaatagagcagtgaaaaataacttttctatttttccattttttg
taacagctccagaaataaaaataaagggaTATTAAGGATAATTGagtact
atccactgatgattcTTGAAACTATatattttaaagctttaatCGCTCTT
TGAACTCtacgcttgagaaaatgattgacaggttgATATTTTTCACCTGT
GAGGGAGTTCACCGTtgttctggggggggggggtggcttTTTTAACTCTT
CCCAAGCCTCGAAccttgttgttttttaattttaattttcatccctaatt
tttCATAGCCCAAGAAATGCAAGTATTGTTTTGTGAAGGCAGCATTCAAG
GAGAAAACATGCGTCAGGTGTACAAGCTCTGAAAAGAAATATGGGAAACC
GATACAGTGTCAAGGATGTGCACTAAATTGTGCATTCCAAAAAACAAAGG
AGACCAAAGCAAAGGTATTCTTAATTTCTTTTGAATCATCCCTTGGttac
aaaatttttagatgttagAAAAGTCTTTATTGACATTTGGCTACGACAGG
ATTTGATTTTGTAActtgtgcaaaatattttcagcatttttggaTTTGCT
TTTAGGTAAACGGGAAGATTCTCTGTTTAAAATGTACCCTTCAATTCAAA
AAAGACAGACATAAAACGCAAAAACAGCAGCGGAAGGATCAACAAAGCAG
GTAAAAAGTCTTAAATTAATTGTACAGTAAACCATCTTTAAATCGAAGCC
TAGTATTCTAATCGTAATTCGAATTAAAAATTTGGTCCTCAGctgaaaag
tggtttaaattactccctataattcgaatccttctctaattcgaatataA
CTTTTGGTCTTTTTTGAAGGTTAAACTAGTCTCTAAATGTAAGATTGGTA
GTAACTCTTGATGATTGACTAGGTTGTAATTATATATGAATCTTCCGTTG
GGGTgaacaaatttataaagaatttAATTAAATGgcatgtttttgaaaaa
aataaattctattgCCTGTGTCTGGTTCAATGGTGAGATTCTCATATTTG
CTCACTAGCCTTGGTAATCCAGTGCTTGCACCTTTGAAAGCAGAGAACAT
CACAAAATCACTTTACAAAACTGGACTTGACTCGACAGACCATTCTCGTC
ACTCCATAATCGGAAGAGCCGAAAAGTAAGTTCACAATCCCATATTCTTT
ATTGAACAACTTCCCTTTTGGAAATATGGTCTATattcttcttaaatttt
tggctaGAGcctaagcttattctgagctccacaCGGGGCTGACCTGGTTC
CAATGGTTCTAAACCTCATGGGACCATCCAATgcaaatgaaaatttcttt
cgtCTTGGCTTCTCTTTCAGCAATAACAGTATTGAACCAACATTTGGTGA
TCATATGACAGAACTAACTTCATTGCGAGAACAGGTAAATTTCCATCTCG
Ttcaggggggggtcttgcagttactccttgacactatgtggagtaactgc
aattttggacattttctacagacaccaccacccttgcagttattccatag
tgtactaactgattttaccctcaaaatcgatgtataccacccccaaaaat
gccaaatttggcaattttttcactgaattcctcatttttgataccatttt
actgggtacgtctcatcaacgaccgttcaagagatAAATATCCAAGTTTg
ttaaatatctttcatgccttgattgaagaaaaaattttgtgatttttttt
ttacttttgaaaaaaatgttttgaatttttttgcttccggaatttttaaa
aacctaaaattttaagtgaaaaattgaaaaatttgctcacttagtacacc
atatcctaccaaaatcgacaattttgggcttaggcaccccccatgttgca
gttagtccactggtggaataactgttttcccaaattttggtttatatacc
accacggtagtaattgtcatagtgtttatataataactgcatgacccccc
ctgtCTCGTTTGCATTCATTTATAGCATACAACAGTGTAGTCATAGATTA
TGCCTTCTCTATATATGTCtgttaaaaataattaataacCGAACTGAATA
TTAATTATGTTTCCCGACATTCTTTATTACCACAGATAATTCAATTgaaa
agaacgataggacaaaaagaaaagattatactggaaaaagacaaaaaggt
aaaattcatctttttatttgaattcaCTGTGTCAATCAAAGTTTACCTTT
AATCCTAACCTTTAATCTAACAACAGGTATTCCTAAACTTGTTAAAGCTC
TATGGATTTTTGctcagaaaatataaaaaaaagtgtaccaaTTTAGCAAG
ATACGATACTGTACGATAGAATATTAAAAATTTGAGCTATTTGCTGCATA
ATAAACTTCGCTTCGAGCACTTGCCCTTAACATTTCACTTGATTGATGAG
AATTTCTGTTTTTCTACTTACAGATATCAGAACTAAAATCCGACCAATGG
GAGAAAGAAAAACTGCTTCGAAGCAAAACACAAACTTTACAAAAACAATA
CGATGAACGCATCGAAAACTTACAAGTATTCTACCACATATACCTTAATC
AAATTTAACAGTGGAGTCTTCATAAACATAAACCTCTGTAACTCAAATGT
CTTTTAATTCGAAGATATTTGTGGCACTGTGAAAGTTTCCTTACAAATCC
TTATATTCGCCTAACTGGCAGCTGAGTATCCGCTAAGACTCCATTGTATT
atttattgaaagtttgaataAGTTATAATGCACCAATCTGCCAATTAATA
AAACCCATTTGAAAACTTCTTATCTAACTATTGTAATCATTATTTCGTat
gattttggatttttcagATTGAGAATTCAAATTTGAAGCGGCAAGTAAGT
CAACTTTCCAAGGTGAAAAAGACACCGAAAGCCGACAAAGTTTCTTCCCG
CATTCGACTGGAAGCGCACAAGATAAACTTGACACCAACATCTGGTCGCA
GCCCTGAACACAAAGCGTCACATACAGAGGAGAGTAACACAGAAGCTGAG
AACACTGAGGAAGAGAACACCGAAGCGGAGAACACAGCAGATGAGGAGAT
GCCATCCGAGGAAAAGAGCGAACAAAAAGAAGGTGTGATGAATCAattct
ttgtgaaaaattttttttttttgagttggCCTTCCTTGTCTTGTAGAGCC
CCttcatttaaaactttttgcttTAACTTTTAACACGTGTTTCTTTCAAG
AAGCAACAGACAAAGCGAAAGATGACAAAGAAAAGGAAGACGACGATCCA
AAAGACACATCAACAGAATTTGTAGAAAACGTAGAAAGTAAAGAGAAAGA
AGAGGGAAACGATGATGAAGGGGTGAATGAACAATCAAAAGATGAAGAAG
ACTCATTCAATTTGGGCGATAGCAAAGAAGAAGAGAAGGAGACGAAGGAA
GAACGTAAGAGGCCAGTCATTGATGAGTCAGACTCACCACAACCGTCCGA
TGATGACGAGGAAGATGAGAAAGACCAGGAGGATGACGAGGAGGATGATG
ATGAAGACAAGAAAACACTTTCACCTATGAAACTACTGCAAAGTTTTGAT
GAGGTACAGTTGAGTCCCGATAAGTAGTACTCTCAGGGAACTGGTGATAA
ATGGTACTCTCAGGGAACTGATAAGTAGTACTCTCAGGGAACTGATAAAT
GGTACTACTTAGCCGCATACTACTTATCCGTAGTACTACTTAAAACAGTT
TAGATTCAATAAGAATCAGCAAACGACTCCACTCGATTCTAGTCTCTTAG
GTGGTTTACTCTAAAAGCTTTGAAATTGTTATTATGCTTTCAGTGAGTTA
ATATTGTCTCGTTTTCCTTTAAACCAAAAGATTTCTGTTAATGTGTTTTA
AACCTATTTTGTGGAATTACTAGGCACAGGCGGATGGCATCAAAAGATTA
TTGAGCGAAGACAACGAGCCGGAAGATGACGATGAACCGAATGAAGAAGG
GGAAGAGGAGCCATCAAAACCTCCTGAAGAAGACGAGCCTGTTGTTGCCA
GTGATGAATCGGACCGAGAGGAACAACCTGTGCGTCACAAGAGAAAACGC
AAGAGTAGTGGATCGAGTAAGAAACGAAAACGCAAGCGAACGCGCGATAA
AAAGAGTAAAGATGAAGATGAGGATGAGGATGGTGAGAAGTCGAGCAAAA
AGTAAGTTTTCTTCCTGTCTACCTTTAGATTCTCGAGAATTCTGACTCCG
TTTTATCACTCTATTACAGTAATTATAATCCTGCCAAGCTTTACCAATGA
TTTCAGAAGAATAACAGTtcacactctctaattcgattttcaaggggact
ATATCGGACAATGGGCTATCGAATAGTACAGTGTCGtttttttAGTGTTT
CTCGTTGACGGTgtctttcaatattatcgaataatggagtatGTAGAATG
tggaattagagagtgtcaactgaaTATTAGGAAATTGTAATTTTGCGAGT
TCTTTCTTGCTGTAGGAAGCGAAAGAAAAAGCATAAAAGCAAAGCCATCA
TTAGTGATCATGAAGATTCAAGTGATAACGACGAGCGAATGACCATCGAT
GAAGGACCAACTGCTGCTGATGGTAGTGATTCTTCTGATGCTGAATAA Coding sequence (CDS) from alignment at sc0000042_pilon:1561745..1566992+ >XLOC_036472 ID=XLOC_036472|Name=XLOC_036472|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3510bp|location=Sequence derived from alignment at sc0000042_pilon:1561745..1566992+ (Clytia hemisphaerica_ch_hm2_pilon)
caggACTGTCGTCGTAAATACCCTCTAATAAATTGCACCTACTGTCAACT
AGAATTCCACATTTTGAAcaggACTGTCGTCGTAAATACCCTCTAATAAA
TTGCACCTACTGTCAACTAGAATTCCACATTTTGAAgaaagtcaaaggac
aagcAGTATGTGGAAAATGTGCCCACAACTTACAAACATATGGAGAGgaa
agtcaaaggacaagcAGTATGTGGAAAATGTGCCCACAACTTACAAACAT
ATGGAGAGCCCAAGAAATGCAAGTATTGTTTTGTGAAGGCAGCATTCAAG
GAGAAAACATGCGTCAGGTGTACAAGCTCTGAAAAGAAATATGGGAAACC
GATACAGTGTCAAGGATGTGCACTAAATTGTGCATTCCAAAAAACAAAGG
AGACCAAAGCAAAGCCCAAGAAATGCAAGTATTGTTTTGTGAAGGCAGCA
TTCAAGGAGAAAACATGCGTCAGGTGTACAAGCTCTGAAAAGAAATATGG
GAAACCGATACAGTGTCAAGGATGTGCACTAAATTGTGCATTCCAAAAAA
CAAAGGAGACCAAAGCAAAGGTAAACGGGAAGATTCTCTGTTTAAAATGT
ACCCTTCAATTCAAAAAAGACAGACATAAAACGCAAAAACAGCAGCGGAA
GGATCAACAAAGCAGGTAAACGGGAAGATTCTCTGTTTAAAATGTACCCT
TCAATTCAAAAAAGACAGACATAAAACGCAAAAACAGCAGCGGAAGGATC
AACAAAGCAGCCTTGGTAATCCAGTGCTTGCACCTTTGAAAGCAGAGAAC
ATCACAAAATCACTTTACAAAACTGGACTTGACTCGACAGACCATTCTCG
TCACTCCATAATCGGAAGAGCCGAAAACCTTGGTAATCCAGTGCTTGCAC
CTTTGAAAGCAGAGAACATCACAAAATCACTTTACAAAACTGGACTTGAC
TCGACAGACCATTCTCGTCACTCCATAATCGGAAGAGCCGAAAACAATAA
CAGTATTGAACCAACATTTGGTGATCATATGACAGAACTAACTTCATTGC
GAGAACAGCAATAACAGTATTGAACCAACATTTGGTGATCATATGACAGA
ACTAACTTCATTGCGAGAACAGATAATTCAATTgaaaagaacgataggac
aaaaagaaaagattatactggaaaaagacaaaaagATAATTCAATTgaaa
agaacgataggacaaaaagaaaagattatactggaaaaagacaaaaagAT
ATCAGAACTAAAATCCGACCAATGGGAGAAAGAAAAACTGCTTCGAAGCA
AAACACAAACTTTACAAAAACAATACGATGAACGCATCGAAAACTTACAA
ATATCAGAACTAAAATCCGACCAATGGGAGAAAGAAAAACTGCTTCGAAG
CAAAACACAAACTTTACAAAAACAATACGATGAACGCATCGAAAACTTAC
AAATTGAGAATTCAAATTTGAAGCGGCAAGTAAGTCAACTTTCCAAGGTG
AAAAAGACACCGAAAGCCGACAAAGTTTCTTCCCGCATTCGACTGGAAGC
GCACAAGATAAACTTGACACCAACATCTGGTCGCAGCCCTGAACACAAAG
CGTCACATACAGAGGAGAGTAACACAGAAGCTGAGAACACTGAGGAAGAG
AACACCGAAGCGGAGAACACAGCAGATGAGGAGATGCCATCCGAGGAAAA
GAGCGAACAAAAAGAAGATTGAGAATTCAAATTTGAAGCGGCAAGTAAGT
CAACTTTCCAAGGTGAAAAAGACACCGAAAGCCGACAAAGTTTCTTCCCG
CATTCGACTGGAAGCGCACAAGATAAACTTGACACCAACATCTGGTCGCA
GCCCTGAACACAAAGCGTCACATACAGAGGAGAGTAACACAGAAGCTGAG
AACACTGAGGAAGAGAACACCGAAGCGGAGAACACAGCAGATGAGGAGAT
GCCATCCGAGGAAAAGAGCGAACAAAAAGAAGAAGCAACAGACAAAGCGA
AAGATGACAAAGAAAAGGAAGACGACGATCCAAAAGACACATCAACAGAA
TTTGTAGAAAACGTAGAAAGTAAAGAGAAAGAAGAGGGAAACGATGATGA
AGGGGTGAATGAACAATCAAAAGATGAAGAAGACTCATTCAATTTGGGCG
ATAGCAAAGAAGAAGAGAAGGAGACGAAGGAAGAACGTAAGAGGCCAGTC
ATTGATGAGTCAGACTCACCACAACCGTCCGATGATGACGAGGAAGATGA
GAAAGACCAGGAGGATGACGAGGAGGATGATGATGAAGACAAGAAAACAC
TTTCACCTATGAAACTACTGCAAAGTTTTGATGAGGTACAGAAGCAACAG
ACAAAGCGAAAGATGACAAAGAAAAGGAAGACGACGATCCAAAAGACACA
TCAACAGAATTTGTAGAAAACGTAGAAAGTAAAGAGAAAGAAGAGGGAAA
CGATGATGAAGGGGTGAATGAACAATCAAAAGATGAAGAAGACTCATTCA
ATTTGGGCGATAGCAAAGAAGAAGAGAAGGAGACGAAGGAAGAACGTAAG
AGGCCAGTCATTGATGAGTCAGACTCACCACAACCGTCCGATGATGACGA
GGAAGATGAGAAAGACCAGGAGGATGACGAGGAGGATGATGATGAAGACA
AGAAAACACTTTCACCTATGAAACTACTGCAAAGTTTTGATGAGGTACAG
GCGGATGGCATCAAAAGATTATTGAGCGAAGACAACGAGCCGGAAGATGA
CGATGAACCGAATGAAGAAGGGGAAGAGGAGCCATCAAAACCTCCTGAAG
AAGACGAGCCTGTTGTTGCCAGTGATGAATCGGACCGAGAGGAACAACCT
GTGCGTCACAAGAGAAAACGCAAGAGTAGTGGATCGAGTAAGAAACGAAA
ACGCAAGCGAACGCGCGATAAAAAGAGTAAAGATGAAGATGAGGATGAGG
ATGGTGAGAAGTCGAGCAAAAAGCGGATGGCATCAAAAGATTATTGAGCG
AAGACAACGAGCCGGAAGATGACGATGAACCGAATGAAGAAGGGGAAGAG
GAGCCATCAAAACCTCCTGAAGAAGACGAGCCTGTTGTTGCCAGTGATGA
ATCGGACCGAGAGGAACAACCTGTGCGTCACAAGAGAAAACGCAAGAGTA
GTGGATCGAGTAAGAAACGAAAACGCAAGCGAACGCGCGATAAAAAGAGT
AAAGATGAAGATGAGGATGAGGATGGTGAGAAGTCGAGCAAAAAGAAGCG
AAAGAAAAAGCATAAAAGCAAAGCCATCATTAGTGATCATGAAGATTCAA
GTGATAACGACGAGCGAATGACCATCGATGAAGGACCAACTGCTGCTGAT
GGTAGTGATTCTTCTGATGCTGAATAAGAAGCGAAAGAAAAAGCATAAAA
GCAAAGCCATCATTAGTGATCATGAAGATTCAAGTGATAACGACGAGCGA
ATGACCATCGATGAAGGACCAACTGCTGCTGATGGTAGTGATTCTTCTGA
TGCTGAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:1561745..1566992 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1801-1932:5117 |
| Aaloc | 1528-1797:4530 |
| Aaloc | 1171-1527:3853 |
| Aaloc | 904-1167:3468 |
| Aaloc | 802-903:3074 |
| Aaloc | 739-801:2736 |
| Aaloc | 676-738:1972 |
| Aaloc | 559-672:1660 |
| Aaloc | 463-555:1206 |
| Aaloc | 307-462:909 |
| Aaloc | 247-306:270 |
| Aaloc | 178-243:1 |
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