XLOC_036216 (mRNA) -

Overview
NameXLOC_036216
Unique NameXLOC_036216
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000021_pilon:2137397..2141357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036216 ID=XLOC_036216|Name=XLOC_036216|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3961bp|location=Sequence derived from alignment at sc0000021_pilon:2137397..2141357- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGACAACAATTTGTTATTGGTGTTATTTCTTTGATTGTCTTTCTCTA
TGTGGTGGAGGTTACATTTTTCTCTTCTCCAAAAATTGCACGTCAAAAAG
TAATTAAACATGATCGGTTTTGGTATAGAAAGCGTTTATATGCACACATG
GCCTCTATTAATAATAAAAAAATGATGGAAAGGTTCACAGATCTACATTT
GAGTAGTGAACAAGCCATATTGGATGCCATGGAAGAGGAATTGAAGGAGC
TGGAAAGCTTTGGTATCGATGTTGATGATTTTGAAGAACGCCCTATACCA
GGTGCTCTAAAACGTGTCAAATTACCGGCTACTCATATATCCATGGTGGG
AGATGATGCTGAAGTTCACAGGCAACGAGATGCTCACGATAAGGAGGAAT
CTCTAAATCCAGAACCGATTACTGAAGCTACTAAGAGAGACAATGACTTG
GTAACGGATGAGAGTGAAGGAAATTTTACGCGTGAGTTAAGTCGTCGGTT
TCGAGTTCGGGATCCTGATCCTGATGATCTCCAGAAATTGACCAAAAAAG
GTATCGATTTTGAACGGGAGACTGATCCTTTAGCGGAATCTACTTATTGT
GAAAAAGAAGTCTTTTTGACCATTTTGGTGATTAGTCAACCTAAGAGTGT
CGAACGGCGGAGGTTTATTCGTGACACCTGGGCTCGAAGCTACCAAGAGG
ATTTTAGAAAGCTCAAAGGGAAACAGCCTTTCCCTAATGGGAAAACCTAT
TCCACTTCAGATGTTGTACGTGTAGTTTTCGTTGTGGGTCAGTCAGCGCA
AACTGATACCAAAGTAATGCAATCAGTCAAAGAAGAATCTCGAATGAACA
AAGATATTGTTTTTGGTAGTATGATGGAGAATTACCGAAATTTAACCACG
AAAACAAAACTTGGTTTGAAATGGGCTTTTTATGAATGTAAAACGTCTTA
TGTTTTGAAAACGGATGATGATGTTTTTGTAAATCCAGTGGTGCTGGTGG
AATGGTTGAAAGAGATCCCGAAAACGAACTTGTATACTGGATGGTGTAAC
TTCAATTCACCTGTTGTAAGGGATAAGCGCAATAAGTGGTATGATGTTTC
TTCTTATTCACTTTTTTATTGTTTTCGCTCACTAGCTCACTCACTGAGAG
AAAGGTTGGCTCTCTGTTTTAGAATGCTTTCAAGAATATTAGAATTTGAA
TATAAAATCCTTTCAAGTTGAAAATACCTCATTATGGCCTTTTTCGACTG
AATTCTTCTCGAATTAGGTTCTGAGTTACAAATTGAAAATCGAAAGTCAT
TACGTAATATAACTTGCTTATAACTTATGTAGCATCGTGCATTTCTTGCA
CGGCATTTTAAAACAAAAGAAGAACGACTTCCTCCGGGTGAACAAAATTG
GAAAACCTGTTTAGTCAGCATAAGTTGTGCGCTTGCTTTTGTTTATCATT
AAAATTGTTGTCTTTAATCTTCCTAATCGTTATGATATTTCTTCTCACTT
TCAGGTATATTTCATATGAAGATTACAAGGAAGAGAAGTACCCTGGATAT
TGTCTCGGCGGGGGCTATCTTATGTCCTCTGATGTGTTAGCATCTGTAAT
CAAACTATCTTACGGTCGTTTTTTGTTTCCTATGGAAGATTTATACGTTG
GTTTGATGATCAGAGAGTTAGATGGAGTTCAACCGAGAGACGAAAGGAAA
CATTTCAATCTTGTTTATAATGGGAAGACTGAAAATAGTTGTGATTTGAA
CTCTATATTTTTGTTGCATAGGGTACTTGGTCAAAACCTTGTCAAACACA
TCAATCAATCTAGAAATGCGCTAGAGAATTGTTGATTATAGTATTATTAT
TTCAGTTTTCTCCCTGATTTTGCTATATATTACAAATATATTGAAAGACC
TTTTTTCCATAGCTCTATAGATGTATTCAATCAGTGAAATCCCAAAATTT
ACTTTGATGCAGATCTTCCGCTTGCGTTGAACAGTAATGGGGACTTAGGA
GTTGGTTATTTTTTGTAATTTTAAGGTTTTTTAATTATCTTTTAATGTTT
TTTTAAGTTTTTACCGTATGTTTTTTATGTTTTTGACTTATTTTTCGATT
TCGGACATACTTTTTATATTATTTGTATGCTGTTTTTATGTACCTGTTTT
TTTTTGTTTGAATGCGATGTCAAATGCTTTATCTTTTTTCAGCTTTGCTT
TTTGTGTGTCTTATTGCCAACTATTGTTTTTTTGGTCTTTTGAAAAAGAA
TTTTACCCAACCCAAGACATTATAATATGTATAAAATTTATATAAACGAA
ACAACATGTTGTGGAGATTTAGTATATTTACATATATATATTATAGCTTT
ATTAGTATAAATCAAAGTATCCAATTTTCGAATTTTTACCAAATTTTTAG
AACCAAATAACCACGAAATTGTTATGAAAGATTATTTATCAAGATATCAT
AGATATTTATGTGAGAATTTACAGAAGAAACTTTATTGTGTCATACACTT
TTCTCGACAGATATTTGTTTGAATACATTCCTGTATTTAATTTTGAAATT
CCGATTCCCTCTGATTGACATGATGCTGTAAACCTACAATCATGGAAAAT
ATTTAAGACAAAGGGGATTTCCCTGCGGAATTTTAAACACCACAAATGAT
TTTAAGCGCTTTAAACTACAGTTGGAAAGTAGAGTTTTAACTATGAGTTT
CAACATGAGACTATGACCTTAGGATCTCAGGATCTGAAAACTCAAATTTG
CTCCAATAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCCTCCAAAA
TCGAAATATTCAATGAAAGAAAGTGGAAGTGCAAAAATAGCAATTCTCGC
CCAAACTTTACATTCTGATAAATGTTAAAAAACACTTATAAAATACACAT
CTAAATATATTTCGACCTTGATTGTAGGTCGGATGAAGTAGTATAATACA
TCATTTTTTGTTCATTTTCTCTCCAACTGTCAATAAACCCCAACTTTTAA
AAATTGATATGCTTTTTTTCTTTTTCAGAAAATAGAGATAAAAATAATCT
TGACTGGTGAAATGTTTTTGCTTTGTCAAAGGCCTCTAAGGTGAGTGAAC
GATCGAGATTCCTTCAAAACAAGGTAATTTTTTCCATCATGCCACTATTT
CATTTCGTATTTAGTATGAACTAAAAAGTAACGTTATGATGCAATGAAAA
AAATATTTTTGCTCTTCATAGCAGCAATCTTACTATTCACCATATATAAA
TTGCGAACGAAATATCCTGAAGGCTTGAATGCCCAGAGACAATATGGCGC
TGGTTACGTAGTTACCAAAGATACGCCAGATGATGAGTTAAGTTTTACGC
GTGAGTTGAGTCGTCGGTTTGGAGTCCGAAATCCTGATCCTGATAATCTT
CAGAAATTGACCAAAAAAGGTATCGATTTTGAACAGGAGACTGATCCTTT
ACCGGAATCTACTTATTGTGAAAAAGAAATCTTTTTAACCGTTTTGGTGA
TCAGCAAACCTGAGAATTTTCAACGACGTAGGAACATTAGAGATACTTGG
GCTCACAGTTACGAAGATGATTTTCAAAAATTGAAAGGGAAACATCCTTT
TCCCAATGGGAAAACCTACTCCACTTCAGATGTTGTTCGTGTAATTTTTG
TTATTGGACAACCGAACGTGGAAGATGAAAATTTGAGTTCATCTTTGAAG
GAGGAATCTCGACTGAGTAAAGATATTGTTTTCGGTAATATGATGGAAAA
TTACCGAAATTTAACCATGAAAACAAAACTTGGTTTGAAATGGGCTTTTT
ATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGATGATGTTTTTGTA
AATCCAGTGGTGCTTGTGGAATGGTTAAAGAAAGCACCCAGAAAGAACTT
GTATACTGGATGGTGTAATTCTAATTCACCTGTAGATCGAAAACCAAACA
GCAAGTGGTGA

Coding sequence (CDS) from alignment at sc0000021_pilon:2137397..2141357-

>XLOC_036216 ID=XLOC_036216|Name=XLOC_036216|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000021_pilon:2137397..2141357- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGACAACAATTTGTTATTGGTGTTATTTCTTTGATTGTCTTTCTCTA
TGTGGTGGAGGTTACATTTTTCTCTTCTCCAAAAATTGCACGTCAAAAAG
TAATTAAACATGATCGGTTTTGGTATAGAAAGCGTTTATATGCACACATG
GCCTCTATTAATAATAAAAAAATGATGGAAAGGTTCACAGATCTACATTT
GAGTAGTGAACAAGCCATATTGGATGCCATGGAAGAGGAATTGAAGGAGC
TGGAAAGCTTTGGTATCGATGTTGATGATTTTGAAGAACGCCCTATACCA
GGTGCTCTAAAACGTGTCAAATTACCGGCTACTCATATATCCATGGTGGG
AGATGATGCTGAAGTTCACAGGCAACGAGATGCTCACGATAAGGAGGAAT
CTCTAAATCCAGAACCGATTACTGAAGCTACTAAGAGAGACAATGACTTG
GTAACGGATGAGAGTGAAGGAAATTTTACGCGTGAGTTAAGTCGTCGGTT
TCGAGTTCGGGATCCTGATCCTGATGATCTCCAGAAATTGACCAAAAAAG
GTATCGATTTTGAACGGGAGACTGATCCTTTAGCGGAATCTACTTATTGT
GAAAAAGAAGTCTTTTTGACCATTTTGGTGATTAGTCAACCTAAGAGTGT
CGAACGGCGGAGATGAGACAACAATTTGTTATTGGTGTTATTTCTTTGAT
TGTCTTTCTCTATGTGGTGGAGGTTACATTTTTCTCTTCTCCAAAAATTG
CACGTCAAAAAGTAATTAAACATGATCGGTTTTGGTATAGAAAGCGTTTA
TATGCACACATGGCCTCTATTAATAATAAAAAAATGATGGAAAGGTTCAC
AGATCTACATTTGAGTAGTGAACAAGCCATATTGGATGCCATGGAAGAGG
AATTGAAGGAGCTGGAAAGCTTTGGTATCGATGTTGATGATTTTGAAGAA
CGCCCTATACCAGGTGCTCTAAAACGTGTCAAATTACCGGCTACTCATAT
ATCCATGGTGGGAGATGATGCTGAAGTTCACAGGCAACGAGATGCTCACG
ATAAGGAGGAATCTCTAAATCCAGAACCGATTACTGAAGCTACTAAGAGA
GACAATGACTTGGTAACGGATGAGAGTGAAGGAAATTTTACGCGTGAGTT
AAGTCGTCGGTTTCGAGTTCGGGATCCTGATCCTGATGATCTCCAGAAAT
TGACCAAAAAAGGTATCGATTTTGAACGGGAGACTGATCCTTTAGCGGAA
TCTACTTATTGTGAAAAAGAAGTCTTTTTGACCATTTTGGTGATTAGTCA
ACCTAAGAGTGTCGAACGGCGGAGGAACATTAGAGATACTTGGGCTCACA
GTTACGAAGATGATTTTCAAAAATTGAAAGGGAAACATCCTTTTCCCAAT
GGGAAAACCTACTCCACTTCAGATGTTGTTCGTGTAATTTTTGTTATTGG
ACAACCGAACGTGGAAGATGAAAATTTGAGTTCATCTTTGAAGGAGGAAT
CTCGACTGAGTAAAGATATTGTTTTCGGTAATATGATGGAAAATTACCGA
AATTTAACCATGAAAACAAAACTTGGTTTGAAATGGGCTTTTTATGAATG
TAAAACGTCTTATGTTTTGAAAACGGATGATGATGTTTTTGTAAATCCAG
TGGTGCTTGTGGAATGGTTAAAGAAAGCACCCAGAAAGAACTTGTATACT
GGATGGTGTAATTCTAATTCACCTGTAGATCGAAAACCAAACAGCAAGTG
GTGAGAACATTAGAGATACTTGGGCTCACAGTTACGAAGATGATTTTCAA
AAATTGAAAGGGAAACATCCTTTTCCCAATGGGAAAACCTACTCCACTTC
AGATGTTGTTCGTGTAATTTTTGTTATTGGACAACCGAACGTGGAAGATG
AAAATTTGAGTTCATCTTTGAAGGAGGAATCTCGACTGAGTAAAGATATT
GTTTTCGGTAATATGATGGAAAATTACCGAAATTTAACCATGAAAACAAA
ACTTGGTTTGAAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGA
AAACGGATGATGATGTTTTTGTAAATCCAGTGGTGCTTGTGGAATGGTTA
AAGAAAGCACCCAGAAAGAACTTGTATACTGGATGGTGTAATTCTAATTC
ACCTGTAGATCGAAAACCAAACAGCAAGTGGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_036216XLOC_036216-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021_pilongenomesc0000021_pilon:2137397..2141357 -
Properties
Property NameValue
Aaloc664-1092:430
Aaloc1-660:3962