XLOC_035873 (mRNA) -

Overview
NameXLOC_035873
Unique NameXLOC_035873
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000194_pilon:98003..106451+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035873 ID=XLOC_035873|Name=XLOC_035873|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8449bp|location=Sequence derived from alignment at sc0000194_pilon:98003..106451+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcgCATATCGCCAGTGTTGCCAAATCAGCTCCTGTCACTAAAGTTGC AAAACCTTTACTTTCAGTGACAAATAATGAAGCCAGACGCAGAGTTTTGA ACCTTTACAGATCATGGTGGCGTGAggtaacttttttttcatcgaattta GCCTTTTCAATTGAATTTCATAGTATAGAAATCGTCAAAATTTTGAGaga gataaaaaacaaaaaaaacaaaaaaccgtAGCGTACGAGGACGAAAAACA GTCTCGCCTAAAACTTTCCCATTATCAAGGAACTTTGCTATTGCAACTTT ATAGTCAGAAAAAACCAACACTCTGGGTAGTCAAACAGAGTTTTTACCTA ATTTGTcgaacttttctttttatataccGTCAAAACTTTGTCGATCGtag ttttttgtcaaatttggggTTATTTTAAAACCATGGTACCCCAAATTGGG GTACTCATTGGGGTACCCATTTAATTCACTGACCAGAATTAAATTGTGTG AAAAAGAATAACACacgcttttaaaaataaatgtagAGTGATATATATCA CAGATGTTATGCGAGGTAATCGTCACAAGCCAAAATCCATGTTCaacaga ttttgaaaacgaaagtgtaaaGAATAAACATTGCCGTAAACGCGTTTAAA ACGCGGGTAAAAAGTCCTGGGCCGAGTCCCGCGTTTGCtcattcagccaa tcagatcacACAATCTAGCCGGTTCCAAACTCTCGCTGTAAAATCACATT GtaaatatcgaaaaaaaaacGGGGGTTTAGATATTTACTAAAGGCTTATT TCGCTGAAAGAAAATAGCTTTAATGaaacaaattttggttaaatatCTTT GTTATTATTTATAAAACCTGAATCTAAATGGTTTTGAGAAGTAAAAGATT GTACGACTGCAAAATAGACAAAGATCGTTTATGACCCCCGTCTCAGATGA GGTTTTCAGGCTTTATCTAAAGATAGAGAACTAAAACAAGCTTAACCCAC TAAACTATATATTCAGCACCAGACTCTTTGACATTCTGAGAAATTATTAG CCCGGGAAGAGCAGCAGATTTCAGCGAAATGCtgctttttgctctaaaag tgtATGGTGGAAATGGTGcttattttcaaacttaaacatcaattcatttg aaatattttgtttatttggattattaaaaggttgaaggtttgttttattt ttattttttgatgatagcTTCACTCAATCGCTTACAATGAgtctttgaaa tttgtttattttggtattCTGATTGCTCTCGCATGatgccgccattatgg agttttttttttgcgtttgctAAATGCGATTTTGTGAGACTTTGCATTAC CAACTTTTGCTTAAGGCAAACACCTGTGatataataataacatataatac aaataatataatatgtgtttataacataataGTATGCTTGTTTGCTTTAA AATACGTGTTTGAGAGAATCAAAGACTACTTCCTAATGTCAATTCATATC CAATTATATGTCCTGCATCATATTGAGTATATTAATCAAAGTAACCTTAG AACTATTGTATTTTATGATGTCATTAAAATTTTTGGTGGAAAGTGTCAGT TTagtgataaaaatgacaaaagacaATGTCATTCCTTTTCTTGCTCTAAA AGCTATCTTTacaaattttccaaggctgAAATGACTGTTAATTTGTATCC TTTCGTACAATGAGCATCACCTTcagtataataaatctttttggAGGAAT TTGACTCACGATtatatatttcaatattttgtaaatatttttgcaaGAAA GTGCCTTTTTTGTCAGCATTCTGACATGTAAAAAGAAGAGATATTAATAA GATGTTACTAGCCAACACCTTACAATTCTCctgacagtatagacctaact cttcacacaaaaattacgggaaacgcatgtttggactttgtaccctatgc tgcactcaagcacttaagccaaagtcccgcaaaggcgggacaaaaatcag ttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaactCAG TATGTCAGTGTGGCTCGAATCcttcagatccttggttagaaaaagctata cctgtttccttttttcttcccagattcaacaagccatcaaccaacaaaat taccaCTGACATCTGAAAATTCACACAGCCTTTCCactagacacttctaa attatctgccattatttCTTCTCTGTCGCACCAAATTCAATTTACAGATT TAATTAAAtctattgttgttgttgtaatgttattgttgtttattcatTAT GACACATTGTGAACTTCCTTTTACTGTATATAGTATTTTCATTCCATGTC CTTTCGAACTCGAAAGCCCTTAGGGTTATTTTTCGTTTAGGagattttta aatgtacatagacctgaaaaaagaaagaaagatataTATAGAAAGAATCT GTTAcattatgaagatgttccgaaattaaccaatccggtttacaatcgga attcctctgggagttagcgagtcgggagatgtaaagttatgtaataggta atacataatttttccgggggttaaacttataaataaaattgaaatggttt gtttttttcttcattatatatttaagttttcattatcaaaattctagaaa tgctagtttgtagaccatattagaaaatggttatatatttcgcaaaataa acacttacaaaagtATTACTTACTATCTTTACCCCCGCTTTTTAAACAAC GTCTTCTGTGGGCGTGATATCAGGCGGAGACAAAACGCCCTCATCGTAAG ATTCTCGGgtcgtcttattgtttgttctttttgtcGAGTCTGTCGTCAAT GTTTGgcggcatacctgaaaataaaaaacaaaaagattatcatattactt ttgcatgaattacgctaccttatacgtcattataaaattatacaaaacga aagCCAGTCTAGGCCGCCCGCCTAGAGCGCgggccctaatattttttctc tcgcactcttcaggggaaaacgaaagtgatcgatattcttcgaaggaaga attcgccaaacaaacccctagacaaaaagatgtattttgaagttgggaat ggatcctgcgaagatgaaaaaattttgactaggcgtttttttggcaaagc caaaaactctaatttttttcttccctcaagctaaaaaggttacaggtttt gggcaatcgaggcaaaaatcagcaaaaagctggtattttccgtaaatctg agaatcgcgataagatcctcactgGTATGTggatagagcagtaaaaaata caacttttctatttttcctttttttttgcaaaagttctaggaatgaaaat aaagggataatgataattgaatactatccattgatgacccacGGCACTAT CGtttaaagctagaatcgcttcgcttactcttcgcttgagaaaatgattg acagattgaagtttttcacccgcgcaggagttcgcggagcgttctcggct caatcctcagaccgcactaaaaatggtagactgagctgtgatagatcatt tcgatggaagttgttggaatgtttacaaggctctttacagaaaatcgttt gttttattgtcaatgatgacagtgcggttattaattttgttagatctgac aaattgatgtttgtaaagTGCACTTtgtagttttgattcccattgaagaa tcatattctggttttcgtgttattagatgctgttttagagctttaggtct acactgcctgATTTTAAGCTATATAATATGATGTTGGGAATACTGTTTTG TTTGGTTACTGAATTTATTCTGGTCTTacttattctggtctgtaaatttt tgaAGTAGGAAAGGaaaaaaaGCTGATTTAATTAAAAAGCAGTAGATTTT CACTACCTGTCGGAGAATGGCAACTGAGACAAAAGTTTTGTGATAACCTT TAATCTAACCTTATCAAACTATCAATGAAAGGTTTTAGCACCATATTATA ATGAAATTAAGTGTCATTTAACAAAATTAAGGTCGGAAAGTGGTACCCCA ATAAGTATCCCAATTGGTGCACCAATTGGGGTaccatgctttttaaaata acccTCAAATTTGTCTaacattttttgttgtcaaactaTGTCGAACTTAa tgttttcttcaaactttttattaaatactcacaattttagcgacCTTTGT aaagttcaattaaaaaatttaatcaaaatttagtCGTTCGATTAAGGCAA GGGGAATTAATAATAATGAACCAGTTACCGCCgtgttgcaaaaaatattt gatgcagcaaaatttcattattcattattcattattttaacCTGGCAGCT TCCCAACTCCAACAACTAGAAATTTCCTGTGTCATCAAGCTGCTTTCACT TTCAGAATCAAAAATGGATGCGCCTAAAATCACACTACATGCCATACAAG CTTAATGAGCGCTTTACTAAGCACAAGCGTGATCTCGTGCTTCTTATTGA AAAGCACGTAAAACGTCCATAACTTAAAAAACGTCCACCTCATTTGCGGG CGTGATTGGAACCATGTTTTTCACAGTGCTGACTCCTTCGTACAggttaa tgaaaattttttatatcGGTTAGGGTCATGATCAGTCATTCATACTgcga gtggtcctaaatccgacagccctgcctaaatccgaccccccccccaaata actgctatgaaaaaaatgtttgcaaacattccctctccaaattgaacaat aaactattgcaagaactcttgaaacaaaacatctcaagatgactataatg tcacaATGTCtgttaatgtgatcaaaaaagtgtgagttgtaaaaataatt atatacctctattattctgattCTGTTGCTCGTGTgttttaaaacgttaa caattttgtaataaaaaattatgttttgtataagaatcaATTATATTGTT ATTTGATTAAATTGGTTCAGTgaatcaaatctctcagtttagttgacact ttggtatctttatTGCGTCACAGTGAacggtttgtttttattttagtttg tatctttgaaagacCCCATCGGATTTAGACAGGGCTGTCGGATTTAGGAC CACTCACGGTAGTTTCTAGAGGGTCACCCCCCTTAAGTGCTAGCCCCCCT TAGGAAATTCATTTAAGATTTCACACCCCCCCCCTTAGAAAACGCAAACT TTATTGGAaaagaaaaaaattgaaatttcgcataattcaaggaagatccc cccttaactggcaaacccccttaggaaagtcatgcttttaacacccccct tgcatttggttcatcaaaacccaagacccccctAGATGaaggggggtaga aactatgtcAGTTAGGGTCAGCGATGTAGTTTGAGAGTCAAAAGAGGGTT GGAAGTAGCATCGGTAGGTAAATATTGGACTCAAGGCCCTGGTAGGGGCA CCCCTAGGGTTGGGGTTAACCCTGGTAGCACTATAGGTAGATTGTGAATT CGAAATTGTGCCGTGGCTTCATGGTCTAGTGGGTGCGTTCGGAGCTTCTG AACCGAAGATACTTTTCATGTGTGGGTTTGAATCCCACCCGGAACTCAAC TTtggtaaatttcaaaagaagcatCCTAAAGATTCAGAAACTCCAGAAAA CTCCAGATCTAAACATAGTTTTGTGTAGCAAAGGTGCGatttttggttgt tttgaaTGGAAAGACAAGGAAATAAAATGAGCTTCttaaaaataatgaac ttttttgagcagCAGCTCAAAGGCATGCGGGCGGTTCATTAATTCTTGCC CTTGTCTaagttcaacaaagtttgattagCTTGGCAATCGGAATAGTGGA GATTCAAAGCCGTTGTGACGAAATGGTATGGATTAGGGGCCGTCCACCTA Cttcaggcgtacaaactttagcgagcagaaactttcgcgaggtcgaaaaa tcgcgaaatttgcgacatttactttcgcaaatttgaggaaaaaatgtttt tcgcgagcagaaactttcgcggatCGTTGggtaaaaatgagaattttaga ATAGAAATTGGCTTGAAAGTGACCGCTCAAGACGGTTGCTattcgacttt aaaaaggcatcaaaggataataataatatgccgaaaacttgatatttatt acgatttcgaggttttatagatttctagtttttttgagaatttttcgcaa GCAATAACTTTCGCAAGTTGCccttttaagaattttcaaagacatttact ttagCGAAAACGGCCAAAATTcgcactaaggggggggggagtcttctcaa aagcgtatgcttgcgtacagggggagggggtcaaaggaaaatgtacgtac gcagagaaaatcttttcatagtccttttttgcttgtttttttgtcgattt ttacgcttcttatacgcatcaaggaaaagaaaaagtttctcaataaacat tgagtttcatgtatgaaacaAGTTTTCTTAaactgaggggggggggtgat tgAAAAACTACGTACTCACCAGGAGGGGGTATatccatttgcgtacgctt gtgCAGGCTTGTGTACAGAGGGGAGGGGGTATTCgaatttcgacatttta gtgcctACGTACTATGTGGGCGGGTGGCCCCATTATATGTTTTATCTCAA ACATGTAGGTTTAAGCCAAGGCAAAGTTTTCAGAAATAGTCTTGGTTAAG AATCCAGGTCCCCAATACTGAGACCTGGGTGATAGtggaaaaataagcat atcatTAGCATATCAGTGAGCTTTGGTCATTACTCATTGTTTAGGGGTAC AAGCCATGGTAATAcctaaatgaaaatacattggtCATTATGATTTGAAT TTCAGATTCCACACACCATTGAATCGCATGCTTTGGACATGACCGTAAAG CAAGGCAGAAGTAAAGTGCGTGAAATGTTTGAGTTAAACCGAAACGTCAA AGACATCAGAGTTATCGATATGTTAGTGGTCAAAGTAAGTTTTAATTCAA AAGCTCTTTACCagaccaacgatgtaaaaataatagataaccaactacct ctagaaggcacttctcccaagagaacaaccattgttttcctattgaaatg agcactctattaaagagctctgtgtgcagtgcgtgttatgcttttagcta gattttgacacactttttgacatccactgaattgatagaaaatttgaatt gttatttactgcaaattttggaatttttttcaaaagataaaggtaccaat ctttagacaaattgactacggatcggcctgataccacttaatcttcatct ggataaataaacgctcataaaatgctgttatctgaaaaatatatgtgtga tttgaaatgcgatatctcacgtatgaaaagtgcatgaaggttgcctgata caaaacaaacagatgaatgtttattatagaacaataatatctaattaaaa aatttcttctgtgaggctgcctataggaaaatacactttttctaacccaa attttggaaaaatatacatcacgtgatcgattctgtccaatagaaggttg caaatgaagcaagtttttatttaattgcactttttacgatgcaaaatgtc attaatatttttacaaccgtaacacggatgttttttgagaatcaaggcaa gttggctatctattatttttacatcgttgaccAGACGTTTTTCAGAAATA CTTTTAGTATTAGTCTAAATTATTAAATTAATTGATCCTCTGTCTATACA AAAGGTGCCCAGATGTAAGAGCAACAGCTAGGAAGGTTAAACCTTACTCt tttttttCTGGTCACTTCTTTcattttagctttttaaaatACAGGGTGAT CCGaaaaaaaGGGacgagctggagtttttacaagatacttcactaattgg tcatttaaagtgatagagatgacgcgttctttagaaaaagtaataagatt cttttattacatcttaacgaccaaccaaatcaaatgagagcttgtaaaaa ctccagcttgtcccgaaaaaaaCTCCCTTCTATGAATGGAATAAGATTTT GTGTATAAGGCAAAGATACAACGGTAATTAAGACTAACCTATAAATTTTA ATTGTAGGTGTAATATGCAAATCACGTTAATGCAGCTGTGGAATAATccg aaaatattTCtttaaattaaaaatagtaactatttagattttgatgatac aAGTGTTACACAAAGAAATTCTACTTAGTGGTTTGACACCACTGGTTATT TTTTCGGCACACCCCGTGAGTGTGCTGTCTGAATtccaaaaatactgaaa atattaaatttatttcTAAGGGCACTCTGGAGCTTGAAGAAACACATCAG ATGTGGAAGCAAAAAACTCACGTATTGAAATATTTCCAAGAAGAACTCAA GCCAAAACAAAGAGACTTTATGCAAAGGTTTTATGAAGGATATGATTGA

Coding sequence (CDS) from alignment at sc0000194_pilon:98003..106451+

>XLOC_035873 ID=XLOC_035873|Name=XLOC_035873|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000194_pilon:98003..106451+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcgCATATCGCCAGTGTTGCCAAATCAGCTCCTGTCACTAAAGTTGC
AAAACCTTTACTTTCAGTGACAAATAATGAAGCCAGACGCAGAGTTTTGA
ACCTTTACAGATCATGGTGGCGTGAgatggcgCATATCGCCAGTGTTGCC
AAATCAGCTCCTGTCACTAAAGTTGCAAAACCTTTACTTTCAGTGACAAA
TAATGAAGCCAGACGCAGAGTTTTGAACCTTTACAGATCATGGTGGCGTG
AgATTCCACACACCATTGAATCGCATGCTTTGGACATGACCGTAAAGCAA
GGCAGAAGTAAAGTGCGTGAAATGTTTGAGTTAAACCGAAACGTCAAAGA
CATCAGAGTTATCGATATGTTAGTGGTCAAAATTCCACACACCATTGAAT
CGCATGCTTTGGACATGACCGTAAAGCAAGGCAGAAGTAAAGTGCGTGAA
ATGTTTGAGTTAAACCGAAACGTCAAAGACATCAGAGTTATCGATATGTT
AGTGGTCAAAGGCACTCTGGAGCTTGAAGAAACACATCAGATGTGGAAGC
AAAAAACTCACGTATTGAAATATTTCCAAGAAGAACTCAAGCCAAAACAA
AGAGACTTTATGCAAAGGTTTTATGAAGGATATGATTGAGGCACTCTGGA
GCTTGAAGAAACACATCAGATGTGGAAGCAAAAAACTCACGTATTGAAAT
ATTTCCAAGAAGAACTCAAGCCAAAACAAAGAGACTTTATGCAAAGGTTT
TATGAAGGATATGATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035873XLOC_035873-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000194_pilongenomesc0000194_pilon:98003..106451 +
Properties
Property NameValue
Aaloc256-384:8321
Aaloc127-255:6856
Aaloc1-126:1