XLOC_035843 (mRNA) -

Overview
NameXLOC_035843
Unique NameXLOC_035843
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000058_pilon:1713059..1723719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035843 ID=XLOC_035843|Name=XLOC_035843|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10661bp|location=Sequence derived from alignment at sc0000058_pilon:1713059..1723719+ (Clytia hemisphaerica_ch_hm2_pilon)
AAACCACTGTTGGCGAAAGATCAAACACCTTGCAAATCCATGGTATGGAA TCAATACAAATTTGAAGGTTGAAGTAAAAAGAACTTCAGGTCAACTCAAC AGTACTTACATGAGCCCtccagtcacctttcaaatcacgcaatcacgcac taACAATTTCCAAATCAAgttatcacgagttaaatttccttAATCACGTT AATCACGTACTTTAAAGtcttaaatcacgaaatcacgaacttgaaaaaac gccaatcacgccatcacgaaaaccgctgggggggaCCTCTTACATACTCT tcgttttctataaaaacaagtaAATTTTTATCGAGGCTCAACTGTTGTTA TCTTTTAGGACAAGTAGCTCCTTATTATTCTTGTCCAGTTCTTAATAGAA GAAAAATTGCGGTAGTTTAGCCTTTATAGCTTGATATTCAGCAACTCGAC ACCCAGCttagttttcaagtttttaagccgttttttgttctcataaaatt gttcttatcaaaaactCAGGAACTACTGGAGCTctggacttgaaattttc actagTGATATATATTGACCATCTAAGATAGTGTgaacaattttcaattt agtcacGTGACCTGTTGGTATTATATAGACGAGTCCGATTTTTACCCAAA ATGCTCACTTTTAGCATAACAACTCGTCCGATTGAGCTGAAATTTTGGCT GCGAGCTTGTATTACCAATACCTAACActtgtcaaaattcaaaatcaata gcaTTTTCAAATCactacaatcggcgccgaaatatttggcacaacagggc aattccctcaaaactttaaaaccgcaagtgaatTTTAAGTGCTTTGTAGT ACCGTtgaaaagtagagttttaaattctgagttttaacattagacttaag acttataACCTTAGGATCTCAGTATCTAAAAGATCAAAAATGTTCcgata aggctgagaatataacctggaagccacttaaaaTCCAATGAttcaaagtg gaagtactgaagcTGTAATTCTCGtccgagctttaaattctgtaaaacgt taaaatacccaaaatttccaatatatttcggcgccgattgtacATACAGt atttgaaaaaagaacaaatttggGCCAGTCCGTAACATATACGATACCAA CAGGTGGCAAAAGATTGGCCCTCTACCCAAAAAATACATGTCATTTGGAG ATGCCTCacaaaattttagcaaaaaatgtTAAAGTGAAAAAATAGTTAGA GGGGGTTCATATTTtcggtattttcaaagaatgctGGCGTCACCAGGtgg cgatgacgtcatcaatgatgtcaaaattttcaccaaagatgccaaTGCAT ATTTGGTGCAtacttgcaaaatttcaactcaattggataaatattttaaa agttatcaaaaagagGGCTCTCTTcccaagatgctcgaagggttaaacGA ACGCCAATCTTGAAAGATTTCATATTATATCATTGAATTCAATGACTTGC TTTTCTTTGACagtaaaattaaattaattttatcaataataaaaaaatta acaatattTAGCCACAGCAAAATCCATAATTACCATCATTAAAAACAGAC AATGTCGAAAAGATCACTAAACGAAGGCTTTGTTGATGAAAGGCCATCAA AATCATTAAAGGTTGATGATGGTTCACCGTTTGCAAATCCCTGGAAAGGC AGTAACGCTGTATTGGTCGTAGAAGATATCGAATTACATGTTCATACTCA AACACTTTCTCTTGCTTCTCCTGTTTTCGAAGCAATGTTTAATGGTAATT TTGTCGAAGCTCAAACTCGAAGAGTTCCACTTGAAGGGAAATCATATGAG ACCGTTGAACACATGTTAAAATTGGTATATAACTTGACAAATAGACTAGG TAACTGGCTTTAGTACTTTTTTAATTATATCAGATTAATCTCATAAGAGA TGATCCTTTCTGTGCATACCACGCAGAGGCTCTTAAGGGATATGGCCGAT GTGACGATCAACCTGGTTGTTCagtcaaaacaatttaaacGCGTTGCTTT TTGCTTGCAAACGAAAGCGAAAGGTGATTGTTTTTCCTTAGCTAATTATT ACAAGTTATAAGTTATTGGTTCAGTTAAAAATAACCTTCATTTGTCAACT TCATTCTCGAATTTTGTGCGACATTCTAAAGCTTTAGAATCATCCACTTG AAATCATCTTAACAACGAGTTACAGTTTAGATATCTTTTTCTTACTACAA CCTTTCACTGTTTTATCTTCTTCTTTAGAACCAAAGACATTGGCATGCCT ATCTTGTAAGCTTGGAGAAACAAAGTGCAAGAAAGACAAAAAAGGTTATG ATATAAATTAAACGTGTATAATATTCTgtcatttaaaggttttgtttttt aaaataagagttATATCGTTTgcctaccttaagtggattaattttcgcga aatttagtccacgcgaaaattttgaaggcctttgattcgcgaaaattagt ccacgcgaatttatttggaattttacaatcgcgaaaataaaagtTCGCGA AATCTAGATAACATGTTACAATCAAAACATATTACGAGTTCAACTCttca tttcaattataaacTCCAGTAACCTCctaataccgggtgcgccacaaaaa agtttctctctttaaaactaatcttctcgaaatctaaaagttttaaacga accattcttatttcattagaaagaagaaagataaacttaaattttgatgg gtcatttattaaattagattcatcagatcaaaagttatgctcaattgaat gaaaaagttattttcagaaagtgctcgaaaacgttgaaaatcgagctatc aaatttctattttaaaattggcaatcgccaTAGCCtatacatgattaaga gcatttttccgtAACTAAACACTTAAATTTtaaaactgaagggtcgaaag ggtttaaaatcttcattagagtcattttaatttacttttaccaaaaTATT CCTCAGAtctttggttctagactggataaagtcgaTGTAGGGCTGGgtgt acctcaaaacccatatctgatgtattttatgaatttttgccagatttctt tgcctttttcgacgaattttcttccatttgttATAAtgcaaccttccttt atataacaaaaggtcatttagacagctaattatcatttttgattactgaa acgaaaatgctgatgcatcatgtaattatgcttctgtttaatttgataag tccatttttaacgtttttgagcactttcaaaaactaactttttgatttaa ttgagcataacttttgatctactgaatcaaatttaataaatgacccctca aaatttaagtctatctttcttctttccgatgaaataagaatggttctttt aaaaatgttatatttcgagaaaattagttttaaagagagaaacttttttg tggcgcacccggtagtactttctttgaagttttttgaaagcttttgagtg ACTTTGTCTGCCTTTGTTCGATTCAAAAACACATCTCTTTTCTAGTTACA ATTTATAtagtcgcgaaattaaataaagaaggccattttcgcaaaattta atcctcgcgaaatctttaaattctcgtctcgcgaaaattagtacaggcga aaatttatccacttaaggtactcatcaatttcaattcacaagctttttca cattggatcagaggaatgtaaagagatggaaaaacagcttttctgattac tcaaagttcaacgatcacttctattgaaaattctattgtaaaaacgttga ttaggtcattaaatgaaagtccagaaaagacggctcgccatacaaatcgg acggtttctacatgatttgacgataaaaatgaaaatttgtttttcctttt ttgccgattactagttcaatttttaaggagcaatatttttaccaatgtat agcaaaagaaattcttaacgcaatgatattaaattggttcttgtaaaact gtcaaaagtcaagtaaaatcaagatgaagttataattttctcgagctcta gctttccatataggggtgcggtcatgatgcggttatatcagtagaatcgc tagggaattttgagcaagaagatataggtaccttttcgtataggagaggt gtacccaaaatataagccctaaaagtttgcgcataatcaggcttgaaaca aaagaattttgtcacaacacgctaattatgcagattttttatagcgacaa caaaagaaacctatttactcgacataaactcccttaagggcaagagacct ggtatatgacgagccgtttttccattgttttcaagaagctgtttttccat ctctttacattcctctgattggattgacacggatgtggagcaagattggt cagaaaaaggaaaagaaaaacatatttttacttatatcagcataatataa caaaaggcagacactgccTTATATGAAATAatgtgtgtctgatatgaaac agaaacacttatgtaaaaataaaacgcAAAAAGTGCAAAGGGGCGTTTGT TAATCGAAATACTGACCTGTTTTTACTGTTCAATTTTCgaaacaaattca aatttatCATGCCACATCCAATATTAAAGTACGGCAACTTTTTCTTCATT GTCATTGAATATCGAAACACTGACAGATAGAAGGGCTTTACACGCACCGT CCAACCCACACAGCTTTGTAATATCTACCATataaaaaaacttcttttaa tacttaacctttccagcgcgcaactttttaaattttcacgctgtcagcgc gcaacattttttcagaaaatagacatgttcagttatttgatcataactca agaactaggaatctttagaaaaaaagtaaggtatccctgaaaagctactt aaattctacaacttttagaccaagtaccaatccaaataaaatattcctac aaaaatggtagcatcacgtaaaccacagttttttttcacgttttgcggta atgtcactttttttgcatttttcacttctagagcaaaaaaaagtgggggg aagttaattaaaaaatctgtcttttgctatttatcaatctatacatcatt ttgaagtaatataccaaaaatcagcatccagaaaaatctgtatgtgtcac accagcctcccaaatatcggtcacttttgccaaaaatcacgattttcggc taaaaaaatccaatatatacaattttgaagtattttgatgataatgtgtt tccagaagcagctacaacatcaataatggtgtaaaagtattccccaacta tctaaacaacacttccagtcagtattcttagcttctgaagcttttgaagg gtatcggctaccgtgaaactagatggcatagtcggcgacagttgcaaagt ttccaaaaaccgCAAGCCTTTTGAGGCAAACTCATTGCTATCAAATCTGA TCTCTTTTGCCCATAAGGAATGCTAAATGTcatcataataattccatgtg gcTGTTATGTGGTTCCTGCCATCATTTTGATCCATATAAGCTGTAATCAG GACATCGTTATGAGCCAAGAATTTCGGGGATCGATCGACCGTTGCTGGTG GAGCGGAAGAAGTAGTGCAATTCAACATAAATCCaggcttttcaaattct ttggtgctcctttgaaataaatgaggtgtagaaaacacttttgcattgaa tttgtccactttccatgctccaacctgaataaaaagtaaaaagtattgta agtttgggtcgactccgatggtttgtcgagaaaagtggtcaaaatgacaa ataaatggatttttttatgctaaaaacaaaacacaaaatataagatatac ttactggatgttttgccattataaaaacaatgtttccatgaagaaaagtg gcctaaaccagtcaaaaaatccaagaactttagcagtaagttggaaaaac ccatttcttggtcgccatcttgattcagtgtttttctctaccttttcttc gaaatctgctgcctcaccacgtgatcaaaacattacatcaccatatatca aaagaaagcttagaacctctacttttcgtttctctttacttctacggcta gcaaagaagccaatgggagaaatatagcttagaagatcACTATATCAAAA AGACGACTATACTCGTCCGCCGGAACGTATGCTCGACGACTATACTCGTC CGCCGGGCTGAAAAGGTTAACTCcaacttttaaaattgatcTTTGTTATA GGTCGTCGAAAATCATATTTTAATGGATGCTACCTATGCGGtttgtatta taaaaagaatggtaaggaaattcatttaaacttatacaaactttcgcgag cagaaactttcgcgaggtcaaaaaatcgcgaaattttcgacatttacttt cgcgaatttgaggaaaaaatgtttttcgcgagcataaactttcgcgaatc gttggatagaaatgagaattttcgaataaaaattgccttaaaaatgaaaa atattccttaaatccgctaaaacggttgctcttcgactttaaaaagtCGT CAAAGGATAATAATCTACCGAAAATTTTATATTGATTACGatttctagtc ggttattactgataaccttataataaaactgtcaatcaaataatgtaaac actaattaaatattcagcgcgcgtgagagaaaaggaaaataaccgtcTAG AAgcggcataccggataagtgggatgggggaacctgggaacctaaagtgg gaacctaaatgaacacctgaaaagtgggatgggggaacctaagtgggaac ctaaatgaacaccggaaaagtgggatgggggaacctaagtgggtacctaa atgaacacctgaaaagtgggatgggggaacctaagtgggaacctaaatga acaccggaaaagtgggatgggggaacctaagtgggaacctaaaacctgaa caccggaaaagtgggatggggggaacctaagtgggaacctaaatgaacac cggaaaagtgggatgggggaacctaagtgggaacctaagttgtttaatta ttaatagaattgaaatatttttctttaaaaacaaatacataaagataaga aagatattatatgcaaggaaagaaaaaaccttttatcataatattaataa gaacaccagttatttactttttacattacgtttcgcaaacaataatgttg aaaataaaacaaagggaatttatttattcaattagctcaaaaaagcatgt ttatttatcagcagttttatagtgcatctttttgaaaggttctttttagt aaattgacttaattgactttaaactttaaaccgtcatatcttcaaatcta gaaggaattagaagttcgtccatagctcgatggataacttagagcctctt ctttcttttgcacggatctaatttgcttgaatacagaatctagtaaaaca ttatttacgatctagtttttgttcactcttgatgcaatacacattgtttt ttttttttttttattagcagctccaattttcgggtcagggctggggtcgc ttagcatttaacggattctagctcgtttttctttctgtaccaaccaaaca gtacagcgtgtgaatacacttcattaattaaaaatgtttgatagtaaaat agaacatattgcacggcttgccacgtttcaatacacataagcatagatcc acgggggggggggctcaaggtaaacgacctaccgtacgtgcggccctttt ttccaagcttcccaaagtacactgtaagggtggaaatgagcaaaaatgag aataagtgcactctaagggtttaaaatttggtcaaagccagtccggcttt tagaatttcatccgaacaagtgtcatgttttaacactgggtaaaatttgg aacatcaaatatgtccatccctatcaggatctgttctagaacatgttgac caagaaaaagatctaggagtgataatcgatagtgacctgacctttgaagc ccatatattcagtaaaatcaagaaagctaactctatcgttggcttgatta gcaggagcttcgaatttctctcaccagatatgtttcgaacgcttttcatt gcatttgtcagaccccatttggaatatgcacatgtagtatggtctccaag gctaatcaaacatatcaatgcaatcaatcgagggcgtccaacgaagagct acaaggctagttagttgctatagaaactactcatacgaagatcggctacg actcatcaatctacctagcctaaagaccaggcggcaagttggtgatatgg tggaagttttcaaaaacctccacatttatgacgagtctataaaatcagag aaatttactcctcgaacacgaccacgacgtcagcatgattacgagcttca aaggaactttgctaatgacggtacgagaggctaccaaagcaactctcttt tttacagaagtgtgaaaccttggaatgatctagaagaagatattgttgaa gcaccttccttacaagtcttcaaagagcgtttgataaaagagtgggagaa aaaactttataaaatgtaaaatcataagttctgtttcatagaggtctATA Gagctgcgaaatatattgctataaaaaatgaaaataaaaaaaaaaataaa aaaaataaaaaattaggttcccacttaggttcccccatcccacttttccg gtgttcatttaggttcccacttaggttcccccatcccacttttcaggtgt tcatttaggttcccacttaggttcccccatcccacttttcaggtgttcat ttaggttcctactttaggttcccaggttcccccatcccacttatccggta tgcctctagaagctacttccaacgcctttttttcttcacctaaaatcgta aagagagacatacagatttctgtatgtctgacccgtgcggtattgcattt atttttctttctgtttattgcgcttttagaaatgctcatttatttatatg ttcccatgttcaatgttactatgaaatatcatttagtcaaaaaagttgga tggattctcaaaaacctaaaagggaagtagcttctagccgttgaaattca gaaaagagacgcaacttcaccccttcaattcttttaatttagagcttgat tttttgtatatgagtctgttttcaacgactagtttattAGTCTAAtggtt ttatagatttccaatttttttgagaatttctcgcgagcataaacttttgc gaattgccctgttaagaattttaaaagacatttgctttcgcgaaaaaggc caaaactcgcgaaaatcgcgaaagtttctgctcgcgaaagtttgtacgcc taaagtattatACATGGTTGATCGGAAAGAAAGTTGTTTGTCCGTCCAGC TtttctcgtgattggctcattagttttttctggttTGAGGCACAaagatg taaaatggcaatgcctaaaatgtgacagagcccgattttcgaagaaaaaa ataatttccggccggaaatccCGGAACTATGCCTGAATAaccggcatttt ctcgagatttcatcattagttttttccgattttttgcacaaagatgcgta ttagcaattgccaaaacatggccaagttcgatttttgagcACAATTTTTT CCGGCTGCAAATGACgcaaatatgccggaaatcaccgtttttgcagattt tcattggacttttactttatatttttcgtttttttgcacaaaaatattat tgattacaatgcccaccatcaattcagcatgattcgattgtcaataaaac tgacttttgaagtcggaactttctaaaagtcaccggaacagccgattATC GCtggaaaaacggttttccttgaatttcttgagctttactttaaatttta caCACTGATGCAGatgccgtttttgcagattttcctTGTTCTTTCACACA AAATTATTATtcataacaatgcccaccatcaagcatgattcaattgtcaa taaaagcgATTTTTGCAACCgaaactttctatttctattttccctttccc ctccccccctccccatcaacaatcaatgatgaaatttaatgtgttatgca ttttcgctaaacgttATAtcttctgactgattgttttcatttttctcctt tttgctatctaactttcatcgtcaggtaggtccattcagcacgTGGCTTG TTAACACTTGTATTGCCGACACTTAATAGTAATCTTCTTTGAAATCTTTA GATCTTGAAAGACGTCTTTTTATCCAACATTTGGTATTGCTTGATGAACT TTCAAAGGAGTACATGCTTGACGTTTTGGCTGACAAAATACAAGCTGAAA TTGTCCACCAAAGTAAAGCTATCGCCAATTTGCAACACGCTTTCGATCTT TTAGAAGCCTCAGAAAAAATTGCGGATTGTATGGAAACTGCAGCTACTTC TATCAAGTACATCCGCCTTCATTTGGATTCGTATGGCGGGCTAAAGGATT TGTTAAACGAAAGGAGTTTGACAATTGAAACCATTTTAAAGATGAAATCA ATTGTACTGATCAATCTTCTAGAAAAATGGCCCGAATCAAATTTGTTCGA GCACGAAGGGAAccaatataaaaaagaagcgaTGTTGTTAGCTAAAGAGC TTTTTGACTGA

Coding sequence (CDS) from alignment at sc0000058_pilon:1713059..1723719+

>XLOC_035843 ID=XLOC_035843|Name=XLOC_035843|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000058_pilon:1713059..1723719+ (Clytia hemisphaerica_ch_hm2_pilon)
AAACCACTGTTGGCGAAAGATCAAACACCTTGCAAATCCATGAAACCACT
GTTGGCGAAAGATCAAACACCTTGCAAATCCATGGTTGATGATGGTTCAC
CGTTTGCAAATCCCTGGAAAGGCAGTAACGCTGTATTGGTCGTAGAAGAT
ATCGAATTACATGTTCATACTCAAACACTTTCTCTTGCTTCTCCTGTTTT
CGAAGCAATGTTTAATGGTAATTTTGTCGAAGCTCAAACTCGAAGAGTTC
CACTTGAAGGGAAATCATATGAGACCGTTGAACACATGTTAAAATTGGTA
TATAACTTGACAAATAGACTAGGTTGATGATGGTTCACCGTTTGCAAATC
CCTGGAAAGGCAGTAACGCTGTATTGGTCGTAGAAGATATCGAATTACAT
GTTCATACTCAAACACTTTCTCTTGCTTCTCCTGTTTTCGAAGCAATGTT
TAATGGTAATTTTGTCGAAGCTCAAACTCGAAGAGTTCCACTTGAAGGGA
AATCATATGAGACCGTTGAACACATGTTAAAATTGGTATATAACTTGACA
AATAGACTAGAACCAAAGACATTGGCATGCCTATCTTGTAAGCTTGGAGA
AACAAAGTGCAAGAAAGACAAAAAAGAACCAAAGACATTGGCATGCCTAT
CTTGTAAGCTTGGAGAAACAAAGTGCAAGAAAGACAAAAAAGGTCGTCGA
AAATCATATTTTAATGGATGCTACCTATGCGGtttgtattataaaaagaa
tgGTCGTCGAAAATCATATTTTAATGGATGCTACCTATGCGGtttgtatt
ataaaaagaatgATCTTGAAAGACGTCTTTTTATCCAACATTTGGTATTG
CTTGATGAACTTTCAAAGGAGTACATGCTTGACGTTTTGGCTGACAAAAT
ACAAGCTGAAATTGTCCACCAAAGTAAAGCTATCGCCAATTTGCAACACG
CTTTCGATCTTTTAGAAGCCTCAGAAAAAATTGCGGATTGTATGGAAACT
GCAGCTACTTCTATCAAGTACATCCGCCTTCATTTGGATTCGTATGGCGG
GCTAAAGGATTTGTTAAACGAAAGGAGTTTGACAATTGAAACCATTTTAA
AGATGAAATCAATTGTACTGATCAATCTTCTAGAAAAATGGCCCGAATCA
AATTTGTTCGAGCACGAAGGGAAccaatataaaaaagaagcgaTGTTGTT
AGCTAAAGAGCTTTTTGACTGAATCTTGAAAGACGTCTTTTTATCCAACA
TTTGGTATTGCTTGATGAACTTTCAAAGGAGTACATGCTTGACGTTTTGG
CTGACAAAATACAAGCTGAAATTGTCCACCAAAGTAAAGCTATCGCCAAT
TTGCAACACGCTTTCGATCTTTTAGAAGCCTCAGAAAAAATTGCGGATTG
TATGGAAACTGCAGCTACTTCTATCAAGTACATCCGCCTTCATTTGGATT
CGTATGGCGGGCTAAAGGATTTGTTAAACGAAAGGAGTTTGACAATTGAA
ACCATTTTAAAGATGAAATCAATTGTACTGATCAATCTTCTAGAAAAATG
GCCCGAATCAAATTTGTTCGAGCACGAAGGGAAccaatataaaaaagaag
cgaTGTTGTTAGCTAAAGAGCTTTTTGACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035843XLOC_035843-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000058_pilongenomesc0000058_pilon:1713059..1723719 +
Properties
Property NameValue
Aaloc409-816:10254
Aaloc349-405:6254
Aaloc283-345:2281
Aaloc43-279:1662
Aaloc1-42:1