XLOC_035842 (mRNA) -

Overview
NameXLOC_035842
Unique NameXLOC_035842
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000058_pilon:1708726..1712272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035842 ID=XLOC_035842|Name=XLOC_035842|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3547bp|location=Sequence derived from alignment at sc0000058_pilon:1708726..1712272+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaagaccaaaagaaGAAGTAGTGTAGCGTATAATTTTGAAGCGCAATC
ATCGCCAGCAACTGCTAAGAAATCCAAAACAAATGGTGGTGATGAAGAGA
TGTTCGTCAAACCATGGAAAGGTAGCGACGGTGTATTGATTGTCGAAGAT
AGAGAAATTCATGTGCACACAAATATACTGTCAatctcatcaaaatattt
tgacagtATGTTCAATGGCAATTTCATAGAGGGGAAAAGCAAGCGTGTTG
AATTAACCGGAAAAGATTATGAACTTGTTGAGCATATGCTGAGGTTGATT
TATCCTCTAGAAGCAAGTTTAAGTAAGTAACCTTTGAATTTCTTAATTAG
AATTCTCTCCTGAATGTGATAGTACCATTGAATTTAAAGTTCGAAGAATC
TTCAGCCTTTCGCAAGCAAAAAGAATGCGAAGCCTTTAAATTTCTACTGT
CTTTTAATCTAGCGCTTTACTTGTTTTCTCACGTACGAAAACCACGTGGT
TCACGCGTTtcggatgggaaataagtggcatCATTTTCCATCTTAAGAAT
GATGTAAAGTGTTAATGTTTGAAATCTGATGGAGCcccattttcgaaaaa
ataattttttggccaaatttgagccaaaaagtgactaaaaatggtgtttt
ttggactttgagtgaaattaaaatacaatacacgtttttttttttttaag
aaacacacttttaagaaacatgaggctcagaatgtctaaaaactaagaaa
catctaagaaacatgctgaggctgagaatgagaaaataacattttttaat
ttggtttttttaagaaccttccaatccagcctttcataaggctgattatg
tcaaaaagtttagaaacatgtacagtaagaaacatttaaggctcaaaagg
ccgatttcttaagaaaaattgAGGCTGCTtgttaaaactagtttcttaaa
aaaaaaaaaaacgtgtagttttttttctgattttttcgcataagtcagag
agcaagttttcattttttagccaTTGTAGCCATTTTTCTATCTTCTTATT
ACATTAGGTCAAGTAGGTCCATTCAGATATTTGCTgccatttttctattt
ttttattgcattagccttcaggtaggtccatgcGACATGCAGCTTGTTTC
TCGCAATattagtgcaaaatttcaacttgtTAATTACTAATAGttatttg
atgtttttgataCTATTGatgttttggtgaattttggaTATTTATTATTA
TTCTGGTCAATAAAATATACTTATgtccaaaaaaaaaggaaactaCTAAT
TTCGATTTCCAAATGTATGTACTCTCCAAAAATGTACTTTGGCTttaact
aaaaaaatcgagtgattaaaaaaaaaagcccTTCATTATAGTGACCGATA
AAATATGTGATATCGAATTTAATTATaaccttttttcttttagctCCAAA
CTCTTTCTTGGTTTGTGGATCATGTAAAGATGCTCCACCCAAAAAGCGTG
CGCTGTCGTCCAGTAAGTACACTTCTCTTCTCCCATTTTTAAtgctaaat
aaaataaatacaacTTTTAGAGGAAAAATTATCATGAAATAGTGCTGATG
TGCAGTagtttatctgatattccgttGGTGGATTGGcagccgcccacgct
aaagctccaaaggagcgggccaatttcccatcggagaggcatttgatgtg
ccgcatcccaaGTCGGGTTCAACTTCCCTTGtgtatgaaggtaaaaatat
ttcgctTGGACCTGCCAATCCCCGAAAtagagggctgggttaccagacct
ccctctgcaaaatccttgacgcggtcttgcaaaattccgtaatctaaacc
ttccagatgttgaaatttCTCCGACCTTCAGATCTTTAgcatgtcggatg
aaaatttctgcatctgggtgccaTATAATACAGTACAGACAGTTTACTAA
ACGAaccatattttttctttttgtgtaatattttccgagcctttagacCA
TGTACACACGCTATAACAACAATTCCTGTTCTCTTGGTTAGAAGTGgcgt
aaaaaatgaatttatcaATAGAATGGAAATgttagtttttattttaatgg
AGTGAAGATcccataatcagcataaaatttccgtttcAATGATATATTAG
GCTGCTCGCATCCACTAACGAATCCGTGCTTCTTTTATACTACcagcggt
tttgtagaggtctgcgattcagactggGGATATTATGTGCTAATTTACCC
GTGTAAAATTCATTTTCCGTAGActtctgtttttttatttcgtttCTATT
AACTTTAGACATTGAAGAGTACAAGCGAAATCCAAACCCATCAAACAGTG
AGATTTGTTTAAAGTGTGGCGATAGGTTTATGAAGATGGGTAAGAGTGTG
TTTCATTCGGTAACGAAAGCTTCTCTAAGTGCAAATGTGAATTAAAGGTA
CAATTTAGAGGAAAAAGCTTTCATGCATTTCGGGcatatttgtaaatatt
ttattcCGCAAATTTACCGGTTTCTGGTCATTCAGCTGACACACAAcctt
gttttaacgttcaaataacgttatatggacgatGTGAACATCAGATTGAC
GTCGAAACAACGTACCTCTTCCCGCAAAAATGCCTTATAAGTCTCGTGAA
ACACAATATAATGTTTACATACTTTTCCAAATAATCGGGGGGATCGAATA
AACGGGgtgttgaaaaattttaaaaattttaataaacggggggacctaat
tgccggggggggggttggaaattgtacttgcgaaaacccaaaaataaggt
aagtataggctaaaatcaggctttttagagcagaataagggaccttccct
ttgaaagctgaaaaaattctttaaattaataaacggggggggggggggtc
ataataaggtcttaaggtctggggggctcataataaggtctggggggCTG
GAGAATTCTAACAAGcagaggggggggggcgtttatttggaacctaggAG
TACATTGATActctcttatcccctgcttcaatctttgtttattttctgcT
CTATTTCAGATGAAGACCGACGGTTAATTTTAGACCATATCAAGAAGTTG
TGGGAAGTTTCGCAAGAATTTATTATTgatattttgagcaaaaaaattaa
gtCAGAAATTGGCCAACAAAGCCAAACTATTCAAACTTCAGCTCACGCAT
TTGATTTACTTGAAATCGCAGATGTTATCAGTTCAAAGTCAGTTAAGAAT
GCTTGTTTCAATTATCTACCCTCCATCTTAACCTCTCTATCAAAGCTGAG
AAATGGTTTATCGGGACGAAAAATTGGTCTGGAATCGCGACTCCGTTTGA
AGGGCATACTATACAGAAACTTATTTAAACGTTTGAAACCAAAAGATCGG
CTGGATGAAGACGTCACCAAAGACTTTAACAATCTGACAGACGAGttggt
tgtttttgatttaGCGGAAGAGATAGCTGACCCAACCAGCGATGATGAGT
ATGGAAGCTcttgtgaaagtgaaagtaatgcCTCCAGCGAGCATTAA

Coding sequence (CDS) from alignment at sc0000058_pilon:1708726..1712272+

>XLOC_035842 ID=XLOC_035842|Name=XLOC_035842|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000058_pilon:1708726..1712272+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaagaccaaaagaaGAAGTAGTGTAGCGTATAATTTTGAAGCGCAATC
ATCGCCAGCAACTGCTAAGAAATCCAAAACAAATGGTGGTGATGAAGAGA
TGTTCGTCAAACCATGGAAAGGTAGCGACGGTGTATTGATTGTCGAAGAT
AGAGAAATTCATGTGCACACAAATATACTGTCAatctcatcaaaatattt
tgacagtATGTTCAATGGCAATTTCATAGAGGGGAAAAGCAAGCGTGTTG
AATTAACCGGAAAAGATTATGAACTTGTTGAGCATATGCTGAGGTTGATT
TATCCTCTAGAAGCAAGTTTAAatgaagaccaaaagaaGAAGTAGTGTAG
CGTATAATTTTGAAGCGCAATCATCGCCAGCAACTGCTAAGAAATCCAAA
ACAAATGGTGGTGATGAAGAGATGTTCGTCAAACCATGGAAAGGTAGCGA
CGGTGTATTGATTGTCGAAGATAGAGAAATTCATGTGCACACAAATATAC
TGTCAatctcatcaaaatattttgacagtATGTTCAATGGCAATTTCATA
GAGGGGAAAAGCAAGCGTGTTGAATTAACCGGAAAAGATTATGAACTTGT
TGAGCATATGCTGAGGTTGATTTATCCTCTAGAAGCAAGTTTAActCCAA
ACTCTTTCTTGGTTTGTGGATCATGTAAAGATGCTCCACCCAAAAAGCGT
GCGCTGTCGTCCActCCAAACTCTTTCTTGGTTTGTGGATCATGTAAAGA
TGCTCCACCCAAAAAGCGTGCGCTGTCGTCCAACATTGAAGAGTACAAGC
GAAATCCAAACCCATCAAACAGTGAGATTTGTTTAAAGTGTGGCGATAGG
TTTATGAAGATGGACATTGAAGAGTACAAGCGAAATCCAAACCCATCAAA
CAGTGAGATTTGTTTAAAGTGTGGCGATAGGTTTATGAAGATGGATGAAG
ACCGACGGTTAATTTTAGACCATATCAAGAAGTTGTGGGAAGTTTCGCAA
GAATTTATTATTgatattttgagcaaaaaaattaagtCAGAAATTGGCCA
ACAAAGCCAAACTATTCAAACTTCAGCTCACGCATTTGATTTACTTGAAA
TCGCAGATGTTATCAGTTCAAAGTCAGTTAAGAATGCTTGTTTCAATTAT
CTACCCTCCATCTTAACCTCTCTATCAAAGCTGAGAAATGGTTTATCGGG
ACGAAAAATTGGTCTGGAATCGCGACTCCGTTTGAAGGGCATACTATACA
GAAACTTATTTAAACGTTTGAAACCAAAAGATCGGCTGGATGAAGACGTC
ACCAAAGACTTTAACAATCTGACAGACGAGttggttgtttttgatttaGC
GGAAGAGATAGCTGACCCAACCAGCGATGATGAGTATGGAAGCTcttgtg
aaagtgaaagtaatgcCTCCAGCGAGCATTAAATGAAGACCGACGGTTAA
TTTTAGACCATATCAAGAAGTTGTGGGAAGTTTCGCAAGAATTTATTATT
gatattttgagcaaaaaaattaagtCAGAAATTGGCCAACAAAGCCAAAC
TATTCAAACTTCAGCTCACGCATTTGATTTACTTGAAATCGCAGATGTTA
TCAGTTCAAAGTCAGTTAAGAATGCTTGTTTCAATTATCTACCCTCCATC
TTAACCTCTCTATCAAAGCTGAGAAATGGTTTATCGGGACGAAAAATTGG
TCTGGAATCGCGACTCCGTTTGAAGGGCATACTATACAGAAACTTATTTA
AACGTTTGAAACCAAAAGATCGGCTGGATGAAGACGTCACCAAAGACTTT
AACAATCTGACAGACGAGttggttgtttttgatttaGCGGAAGAGATAGC
TGACCCAACCAGCGATGATGAGTATGGAAGCTcttgtgaaagtgaaagta
atgcCTCCAGCGAGCATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035842XLOC_035842-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000058_pilongenomesc0000058_pilon:1708726..1712272 +
Properties
Property NameValue
Aaloc475-960:3062
Aaloc394-471:2311
Aaloc325-390:1446
Aaloc1-321:1