XLOC_035538 (mRNA) -

Overview
NameXLOC_035538
Unique NameXLOC_035538
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000242_pilon:433888..438838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035538 ID=XLOC_035538|Name=XLOC_035538|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4951bp|location=Sequence derived from alignment at sc0000242_pilon:433888..438838+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGTGAATTATGCAGCTGGTTTGAGCAATTTTCCACATATTCACAA AGGAAGAGTTGGTTTACCTGAGGTAAGTAGcctatttttttgttgattga gGCCAGGGATTTGATTTAATGGTTAGTAGGAAAAGACGACATATTAATGT GAATTCGATGACCcaataatatttttaattattaataCCATGATATTTCG GTCCTaaaaaaaTTAGTCAAGACAAGGCGTACTTCTCAAGACCCTTAGGC AGAGATCACTGCACAGGCAGAAAGATTAGTTACTCAAGTGCATATCCTGA TAATCTTGATAATCCTGAATATCCTTGAAATATAAAACACGTGAATGTTT CATTGGCTCACATCGTCTcttagattagtctgacacccaaaaactttaaa taataattttataattcATATCTCCATTTACATTATTTTCGTAGATCTTT GACGAGCCGGATGTTTTAGACGAAAAAATCACTGAACTAGTTAACTTGAT CAAAACGTCCGAATACATTGTCTTCCATACTGGAGCAGGGATTTCTACCA CAGCAGGAATTCCAGATTTTCGAGGTCCAAAAGGTGTGTGGACACTGGAA TCTAAAGGCCTATCACCACAAGTAAATATaggtattttgttttgtttata tcatatTTTCTTCTAATAATGGATCTTTTCTTATGAATTGGTTACACGCA ACTCCAATTTTGGGGTCAGTGCTGGGGTTGCTAATCATTCTAGAccattt tctggaaaatttgcTTTGACTACCTCTGATatacaatagcgagtttatgt atttgcacttttgaggacggtaaagtgactgaagcgatttggaaaaaccc gcacttCTGTCCCGCAAAATCGAAgatggtaaaagtgctgatttaccgtc gtcctcagttggtcatgatctagtcaaattagaaccttaccgtctccgtc ccTGAAAAGCACACATACATAAGCTTGGTAATATTTATACTTCTCGGGTC AAGAGCTACCGTCTTCCATGGTTTGATTATCTAGTATAGGTTTTACTTTA CCAGATAGTGAAAAATAGGCTACTTCGAGGACTCGAACCTTAGCAACCTG CATCGATACTTTTGTAAGAGAACTTTTACCTAAATGATGTTTTGAGTACG AAATGttgtaataaaaacaaaactcaTTTCGTTGTCTTTCATATATTGAG AAGTTAAAATAAACCTTTCCGGACTTTCTTTCATACATATTAATAGTTAC CAACCTGGCTACCTTGtttttttCGTTAGCCACTTAGTGATCTtgaaatc atttatttttccaaaagcaaCATCATTATAGAGATTCGCTGTACAAAACG AAGTCCATTCTGAAAAGATTTCGGCTCCTATTATGAATCCTTTCTGGTAA AGTTTAACTGGTTGTACCGTATTCTTACTGTTAGATTATTGTCATTGATC GCCATTAAATTACCTTAAGCTATGGGTAACTTTCATCACCTCCAATCAGC AGACTTTCTGCTAGAACTAAAACGAGTCATGCTGTGACTTATTTACCTTA ATAATAAATTGAGGACCAGAAAATGTTGTGGTCTGGAGGTGATTAAAGTT ACCCCTAGTTAATGACGGTAACCCCCATTGACGGTatcaaaaaaaacatt aaagaattttcaattgACTATATTTACCTTAATTTTTATCTTGcccattt tcagattttgacgAGGCGATTCCTACTAAAACACATCGTGCGATTCTAGC ATTACAAAAACTCGGCATTGTAAAGTACGTTGTCAGTCAAAACATCGATG GATTGCATTTACGTTCAGGCTACCCAAGGTAATTTTAGAAGTcgactatt tttttatttctcttgatTCTGCAGCTGCAAAAGATGTGAGAAAACGATAT TCTTAAAATGCACAAGATAATTGCTATCAAAATATTGTTGCCAATATACT GCAACGCCGTCAGATATATCTTAAGAAGTGTGAGGAATGAAAAGCGTGTA TCGGTGTTGATTTTAGTCAGAAATCCCTTACtttttttGCTAAGATTTAA TAAgttcaaacttaagtcatagTCTCCAAAACAAAGAATCTTCAATTTCG TTTTTAGATGTCAACTGTCCGAATTACACGGCAATATGTTTGTCGAGAAG TGTGAGAAATGCGGACATGAGTATTACCGGAGAAGCCCTGTCTCTACCAT GACACAAAAGAGGACAGGCAACCTTTGTTTACAGAAAGGAAAACGCGGCT TAACTAATTGCAGGTACATTTCTTTTTTAGCCTGCACCAAACTCTTCCTC GCAGCGggaagattttttcaatttacgaAAAATTACACTACTTGGGGGCC CCGGTACAAGCTATTTCTTTAGTAGAATGTCTTTTGGACCTACTCCGGTG GAGGTGCTATAAATTAaccgtcgttcgttcgttcgttcgtctgttaccga cttttctcaggattggatcatagaaatcttttgattttcgCTACAacggt gcaaaatggtagtggccaaatgTGACgaaacccgattttcgaaaaaaaaa attttttgggcaaatttcagccaagACGGTTAAAGAaaggactttgtgaa aaatttggtCATTaaatctttctgattttttgcattaaagttgggtaaca tcattggtaaaagatggctgaagcagattttcataaaaatattttttcgg ttcaaaaaacgaatctttatctacaAGAAtcgctatttataagcatagat caatatTCTTAGcgatattatttttattagttttttttaagatgaaaatg tcacagTGGAGggcaatggtttgagttttctagaaacatatctttttttt ttgcctgaaaaacgaatctttttctataagaatcactaggTCAAAGTTCT TAgccaaataattattttcattataattttttctaatagaagaaaatgtc aaagtaGAGTGCAATGGTTTTAGTTTTCtaaaaaccttatttattaagat gtgcatttttctgatagtggattttataaaaaaaagcgttgaatagcttt tttatttctttttcaaaagtctttttcaatagtgttgatagtttcccCCA ATAGATATGCTTGCCAAATTTTTTGAACAGTTATGTCTTTTgagtttcat tgtttcaatgttcattgattagttttgataaccagttaggtccatcaaag tatcacttgtttacttGTAAATTCAATATATACAGAGATTGTACTCAAAA TAAGCCTATTTTTGATTACAGGAAATTTGCCCCTTACGCCCATTAATTTT GACCGGATACCAGTTACCAGCTTTCATTCAAGCTTCTAATATTTTCCTAT TTATAGAGGAAAGCTGAGAGATACAATATTGGATTGGGAAGACAGTCTAC CTTATGGTGATTTGGAAAACGCAGAGAAACATTCAAAGTAAGTCATGTTT AAAGGGATAGTCAAATTGTTTGGGATATTTGACGAGTGGATTTTTACTAT CGCACTGAGCAAGACCTCCAAATATTCTTGCCTAACTATTCTCAAAAGTC GAGATATTCAAGCCACAAGTCTTGACTGTTattaagaaaacaaaagaatt tcaacgCAAGAAACGTGTAAGGgctcaattttagaaatttcaagtTGTGA TATCTTGACTTTGGAAAAAAGTTAGACACAAAAATAATTGGGGTGTTACT CAGTATGACATGAGGTTTCGGCAGCCCTaatatctcaaaatatttgacTA TCCCTTTCAAGTTAACCATTTCTCTTATCATTGCGAGTTGGTGTGTCACA TACAAAGGATTGACACACGGGCAAATCTTCGTTAcgttgattgaattttt tttcaatttcaccgtacaaaaacaaaagccaaaggataaaaattaaaaac attctgTTCATTTTTCACATTTAGAAAGGCTGATTTATCAATATGTTTGG GGACCACATTACAAATCGTGCCAAGTGGGAAACTCCCTTTGTTCACGTTG AAAAACAAAGGAGGAAAAATGGTTATCGTCAATTTACAGAAAACTAAATA CGTAGGTTGAATGTTTATAACATTATCTTTTAAGTGAAGGAAATGGAAGT TTATGGGTCATTTGTTGGATCCTCTCTCAGTATAACCATATcacttgtct gtacacaaacccagtatctgtggcttatttcaaaattcattgccgtagat ggtctgttgtcattgtcttttctcatttttcaaacCAAAAGTCTAACTTC ATcccagaggtctccgtacgggaattttttcacccaaacagacaatgcgc acagagtgtactacgaagcgagaAACGTGAGATACATTCTGGTACCATAT CACGGGTATCACGGGCGTCTTTAGCGTTTTTTAAGTCGTGCTGttctccc ccccccctcctCGATTTTTCCCCGGCATTTCTCGTAGTTAGCACAAGCTA ACGCACCTCGTCTGGGTTTAATGTTTAATAGATTAAAAAGAAGcaagtta aagaaaaataacaattcATTTTCAGGATAAAAAGGCGGACATTCTGATTC ATTCGTATGTTGATGACGTCATGGTAGGTGTAATGAAAGGACTGGGACTA GAAATCCCTGAATACAATAAAGAACTTTATTTGAGTATCACCACAAGATT CCctgatgaaaaattgaaaattaaaccgAAAGAAGAACAAAAGGGAATGA CAGAAACGGAAGAACGTATTGGCCAATTAGATTCGAGTATAAAAACTGAA CAAAAATCAGATTTGATTAATGAAACAacagaagaaattttaaacCGCTC AAATTTAGGTCATATTTCCATTCACCAGTTATCAGAAAACGGTGTTAAAA AGTTGAACGGAAACTCATCGAATTCGAAAAGAACTTTACCTGATGAAAAG TTAAATGAAGGACTGACAAAGCACGTCAAGTTAGAGGAGAAagatttcta a

Coding sequence (CDS) from alignment at sc0000242_pilon:433888..438838+

>XLOC_035538 ID=XLOC_035538|Name=XLOC_035538|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2346bp|location=Sequence derived from alignment at sc0000242_pilon:433888..438838+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGTGAATTATGCAGCTGGTTTGAGCAATTTTCCACATATTCACAA
AGGAAGAGTTGGTTTACCTGAGATGTCAGTGAATTATGCAGCTGGTTTGA
GCAATTTTCCACATATTCACAAAGGAAGAGTTGGTTTACCTGAGATCTTT
GACGAGCCGGATGTTTTAGACGAAAAAATCACTGAACTAGTTAACTTGAT
CAAAACGTCCGAATACATTGTCTTCCATACTGGAGCAGGGATTTCTACCA
CAGCAGGAATTCCAGATTTTCGAGGTCCAAAAGGTGTGTGGACACTGGAA
TCTAAAGGCCTATCACCACAAGTAAATATagATCTTTGACGAGCCGGATG
TTTTAGACGAAAAAATCACTGAACTAGTTAACTTGATCAAAACGTCCGAA
TACATTGTCTTCCATACTGGAGCAGGGATTTCTACCACAGCAGGAATTCC
AGATTTTCGAGGTCCAAAAGGTGTGTGGACACTGGAATCTAAAGGCCTAT
CACCACAAGTAAATATagattttgacgAGGCGATTCCTACTAAAACACAT
CGTGCGATTCTAGCATTACAAAAACTCGGCATTGTAAAGTACGTTGTCAG
TCAAAACATCGATGGATTGCATTTACGTTCAGGCTACCCAAGattttgac
gAGGCGATTCCTACTAAAACACATCGTGCGATTCTAGCATTACAAAAACT
CGGCATTGTAAAGTACGTTGTCAGTCAAAACATCGATGGATTGCATTTAC
GTTCAGGCTACCCAAGATGTCAACTGTCCGAATTACACGGCAATATGTTT
GTCGAGAAGTGTGAGAAATGCGGACATGAGTATTACCGGAGAAGCCCTGT
CTCTACCATGACACAAAAGAGGACAGGCAACCTTTGTTTACAGAAAGGAA
AACGCGGCTTAACTAATTGCAGATGTCAACTGTCCGAATTACACGGCAAT
ATGTTTGTCGAGAAGTGTGAGAAATGCGGACATGAGTATTACCGGAGAAG
CCCTGTCTCTACCATGACACAAAAGAGGACAGGCAACCTTTGTTTACAGA
AAGGAAAACGCGGCTTAACTAATTGCAGAGGAAAGCTGAGAGATACAATA
TTGGATTGGGAAGACAGTCTACCTTATGGTGATTTGGAAAACGCAGAGAA
ACATTCAAAAGGAAAGCTGAGAGATACAATATTGGATTGGGAAGACAGTC
TACCTTATGGTGATTTGGAAAACGCAGAGAAACATTCAAAAAAGGCTGAT
TTATCAATATGTTTGGGGACCACATTACAAATCGTGCCAAGTGGGAAACT
CCCTTTGTTCACGTTGAAAAACAAAGGAGGAAAAATGGTTATCGTCAATT
TACAGAAAACTAAATACAAAGGCTGATTTATCAATATGTTTGGGGACCAC
ATTACAAATCGTGCCAAGTGGGAAACTCCCTTTGTTCACGTTGAAAAACA
AAGGAGGAAAAATGGTTATCGTCAATTTACAGAAAACTAAATACGATAAA
AAGGCGGACATTCTGATTCATTCGTATGTTGATGACGTCATGGTAGGTGT
AATGAAAGGACTGGGACTAGAAATCCCTGAATACAATAAAGAACTTTATT
TGAGTATCACCACAAGATTCCctgatgaaaaattgaaaattaaaccgAAA
GAAGAACAAAAGGGAATGACAGAAACGGAAGAACGTATTGGCCAATTAGA
TTCGAGTATAAAAACTGAACAAAAATCAGATTTGATTAATGAAACAacag
aagaaattttaaacCGCTCAAATTTAGGTCATATTTCCATTCACCAGTTA
TCAGAAAACGGTGTTAAAAAGTTGAACGGAAACTCATCGAATTCGAAAAG
AACTTTACCTGATGAAAAGTTAAATGAAGGACTGACAAAGCACGTCAAGT
TAGAGGAGAAagatttctaaGATAAAAAGGCGGACATTCTGATTCATTCG
TATGTTGATGACGTCATGGTAGGTGTAATGAAAGGACTGGGACTAGAAAT
CCCTGAATACAATAAAGAACTTTATTTGAGTATCACCACAAGATTCCctg
atgaaaaattgaaaattaaaccgAAAGAAGAACAAAAGGGAATGACAGAA
ACGGAAGAACGTATTGGCCAATTAGATTCGAGTATAAAAACTGAACAAAA
ATCAGATTTGATTAATGAAACAacagaagaaattttaaacCGCTCAAATT
TAGGTCATATTTCCATTCACCAGTTATCAGAAAACGGTGTTAAAAAGTTG
AACGGAAACTCATCGAATTCGAAAAGAACTTTACCTGATGAAAAGTTAAA
TGAAGGACTGACAAAGCACGTCAAGTTAGAGGAGAAagatttctaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035538XLOC_035538-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000242_pilongenomesc0000242_pilon:433888..438838 +
Properties
Property NameValue
Aaloc748-1173:4526
Aaloc622-747:3926
Aaloc541-618:3358
Aaloc385-537:2109
Aaloc262-381:1707
Aaloc73-258:445
Aaloc1-72:1