XLOC_035361 (mRNA) -

Overview
NameXLOC_035361
Unique NameXLOC_035361
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000017_pilon:1395667..1403460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035361 ID=XLOC_035361|Name=XLOC_035361|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7794bp|location=Sequence derived from alignment at sc0000017_pilon:1395667..1403460+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAAACAACGAAAGAAGAAGAACCTTCCAGCTCAAGATGAAGTTCA GGACACTACAGGTATTGATCTCAATAacccaaaaaaaataaaatgttttc ctttttaaaatctcttttattaaATTAAAGGCCTGCCTTAACCTTTTTGA ACCTAGGTACCTCAAGAACCTAGGTACCTGAATGCCGTACTTGATACATC CTGCTTCTGAATGCCGTACATGTACGCAATTTAATAGACACGTCTTTCTT GCGCCATATCTTTTATTGGCTTGCTTGGTAATCCCCCAGGCGTATTAATC GAACAGTTAGATTACTAATCAAATTTTGTCGAACTTAGTCGAATGACAAA AGTTCGTTTAAATTCTTTAATTGAACgacaaaagtttgattaaattcttc aatcaaacttttcaaaagtcgctaaaattgtgagtatttaAATTAAGTTT GACAAAACATAATATTACGACCCAATCAATCTAGAAAGTAAGGCATGTAC GCCCCggatagcctgggaatccatgctatgatttcttctttgataaactg atggcgaaatgtatagcatggtatgggctgagagtttgaatttctcagat cctaataacggttgaaaacatagccaatcaaattttgctattcttttact ggtgacactttcttagagaaagcaggagaaagcgcaactttcaaaatttg gtttttattttagtaagtgaggacagcgctaaatttgaatttcccaccgt aaaaaatgtgagtccaaacAGAGGTCCCGGCCGGGGTTCTGCGGGGAGTT GGgtcggtgcccactggtcaggggatgtgagggtacacgcctgcaccggt gggggtccttcaaagttcctcaaagtgttgtcaaaatccggcaaaaattg gaaaattggcgaaaattggtcaaaattgggaaaaatgacctcatttgggt accaccgtggacggcccctgggggtcccggccggGGTTCCGGGAGTTTGA TCGGagcccactggtcagggggatgtgagTGTACATGCCTGCACCAGCGA GGGTGCTTcgaagttcctcaaagtgtcgtcAAAGGCCGGCAAAAAGTGCC TTCAGTTGCTtgggttttctcaaatttttatttgattaaatttgacaaag ttcgattaagtttgattaagttcgattaatgtAATTGAACTAATCCAACT GTTgaggtctctttaaaaaaagtatgaTTAAGTTCAATTTCAGTAATCAA ACTTTTAaatcgaactttgtattttgagaaatttgtgagtattcgattaa agtttGACAACCGAACTTAGTCATACATTAATCAGCCAACAAAGTTCGAT ttttaagttcgacaaagttcaattaaaaatatcgttcgattggtttgatt gattacGTCTGGGTAATCgtccaaaaaagacaaaaaagaaagtagagagt ctaagctttcccttgatatataatgatgtaatggtgctgtggtatagtgg tcattgaccttggttgttacacaggcgactgaggttcgattcccactcgc agcagtTCACTTaaggcaagtgaatgaaccttcccccgggtcaacccatg ccataggggaattgggtagtcagtccaaggtgctgacggggcgctcattg aaagcgtctatagttgcaaaaaataggcctcaaagcctcctgcaactcaa ccaaatagaaatagaaatagaaatgttaTTATCATATGGTGAGTcagcac ttttcaaaaataacacTTATTCAAATGGCGGACAGAAAATCATTGATTTC TGAGAAAAGTGACTGCTGTTTGGAAAGCCATTGTGAGCAGTAGAATGTTT TTTAGATGCTAATTTTTGGTATAAGGCTTCAGGACTAAGTATATAATGAT AAAATACTAAAGAAGAATTTAATAATTAAActtcccccacttttttttgc ataggaagtgaaaaataccaaaaaagtgacattaccgAGAAATGAGGaaa aaaaCATGGTGAATAAGGAGCTACCATTTTAGTTAAAGTATTTTATTTGG ATTGATACCCAACCTAAAAGCTGCAAAATTTAACTAGCTTTTCAGCAATC TCTGTCCTCGAGatgatttctgccatactcTGAAAACTGGAAGATCAGCA AGACAACCTTTGTCCTTTGACGAGGAAAGTTGCATTCAAAGTTGCAATGA TTTGACTCAAATCATATCACTTCATGCATCAAAAGAAGCCAAAAAAGGCG CTGTGGtttagtggtcattgaccttggttgctgcacaggcgactgaggtt cggtTCCCACTCGCAGTGGTTCGCTTGGCAAgtaaatgggccattccaga atttgtctgtaaaaGGGGGGCAGACGACACGGGATTTCCAAggacaaaag ttttcaccaaatttcaaaattccaaggcgagagaagaagaTGAAtgaggc caaaaaaaaaagtagtcttgtttccggaaatcggccgggtgaactttttt ttggaaaaaaatagatctcacccggccgcaaatagaaaaaaacttttttt tttgtgcaatcgaagaaaaaaaactttttttcaaactgaataTTTCAGAC AAGTAAGCTAAAGAACGCAAAACGTTTTCTCAATATGTGACGAGTGCAAA GGTAACGGAAAAAAGTCATGAAGAGGGGTCCAATCCAAACCGCCAAAGCA AACAAACAGCGAGCTCGTCGCAATAAAAAAGATACATAAagagtttattt tccattttacgatccatttaacgattttattcaaagatttataaagagtt tattttccattttacgattttacgatccatttaacgattgtattcaaaga tttacgtatgtcacttgtgttttgaaaaagaaaatcttctgtcacaaatg ttttctactttcctgttttatgttgttgtgaatagaattaccttagagta cagcttcttcttaaaatttcgttttttcaagtaaagagacatcaaacctg gattatttttttgtacacgtcaattagagtttttctaggaaaattgaaaa aaaaaaaattttccggccgcccgggtgagattttttttcgtcacccgcat ttccggaaacaaaactacttttttttttggcctgaATTTCCAAggtaatt gaattaaaaaaggcaaaaaagagtggaatatCTGATGTATTTAGCtgaag tacatggattttcatctGAATTTCCAACTaccactggaaaaaaaaaaata tttccgaggctagaaaaaatttaaaaatgcaaacaaaaattttctggagt GGCCCAATGAacctttgcccgggtcaacccatgccatgtgaggatGACTg ggggtagtcagttcaaggtgctgacggggcgctaatTGAAAGTGTCTATA GTTGCAAAAATGAGCCGCCTCAGACAGTGTTGCTGGAATCCCTCAGATCC TTgtttagaaaaagctatacctgtttacttatttcttgccagattcaaca agccatcaaccaacaaaattaatactaatatcagaaaattcacacgacct ttccactagacacttctaaattatctgccattatgaagatgttccgaaat taaccaatcgggtttacaatcggaattcctctgggagttagcgagtcggg aaatgtaaagttatgtaataggtaatacataatttttccgggggtaaaac gtataaataaaattgaaatggtttgtttttttcttcattataaatTTAAG TTTCtattatcaaaattctagaaatgctagtttgtagaccatattagaaa atggttatatatttcgcaaaataaacacttacaaaagctattacttactt tttttacccccgctttttaaacagcgtcttctgtgggtgtgatatcaggc ggagacaaaacgccctcatcgtaagattctcgggtcgtcttattgtttgt tccttttgtcgagtctgtcggtcctattgttcatgctaaatccatacacg atgacgtcaatgtttggcggcatacctgaaaataaaaacaaaacgattat catattatttttgcatgaattacgctaccttatacgtcattataaaatta tacaaaacgaaagCGAGTCTAGGCCGCCTGCCTAGAGCGCGggccctaat attttttttctcgcggtcttcaggggaaaacgaaagtgatcgatattctt cgaaggaagaatttgccaaacaaacccctagacaaaaagatgtattttga ggttgggaatggatcctgcgaagatgaaaaaattttgacttggcgttttt ttggcaaagccaaaaactctaattttttttttctctcaagctaaaaaggt tacgggttttgggcaatcgaggcaaaaatcagcaaaaagctggtgttttc cgtaaatcttagaatcgcgataagatcctcactgtcaaagcctcctgcga ctcaaccaaatagaaaaaaagccTATTGGAGTGTAATCACTGAGAATTGC TATACCATGATTAATATTTTCACCCAACAAAAGATATATATGGGCAAGCA tctagacctttttgccttttcatccgccatcttgaattgtatgcaaaaaa tGATGATGAATTTGTTGTGGTTAGATCTCATAGGAAAATATGCAAATCAA AGTTTGTAAATATGAATGGCAGCTTTCAAGAGCTTAATCTTGGTACCATT GTCAACTTCCCCCCAACTTGCCTTTCCTcaaaagtgaagaagaagaaata tgTGGCATTATGATGGAGTGCCTGAGGTCACCAGCGGTGGTATATTACAC ACTTGTAATTTGTTCATTATATTGAAGCGTTATCTAATATTTCCATGGCA GATTGGCGGCCGCTCACGCTAGAGCTCTAAAGGAGCAGGTCAATTTCCCA tcagagaggaatgatagtTTGCCTTTGATGTGCTGTATCTCCAGTCGGGT TCAAGTACCCTTGTGCGTAGACCTAAAGATATTTCGCGGAGGGCGCtcta taaatttcaaatcaatgtcagctatttcgaaaaataacaaaataattaat aaaGCGCGCTAGCAGTGAAAATTCATTTGTCATGGTCTCTTGTTGCACAA ATGTTGGCTCATTCGTATTGTTAAATGCTATGTCTATGGACACAAAAATA CGACTATGTGTCCTACAGATATTGTTccaatgattataatatttctttat aagatgctttttgtctttttaatctttttgtaaacttgcatatgttttgc atatttttaaaCTAAATCCAACCATGGTTTTTTCATTCCTGTATTTTTAC ATATATAATATAACTCAATATGGCGTATgtaaaggcgaaaaggtctatac tgttgctaagatgttaccttgaaataaaaaataaaaccactgaaaacgaa aataaaatagACCCATACTCTAAATCTCATAATTTCGATATGCGAGTTTT AGTCtaaactgtttggttatcacatTAACCCTTTTTCCCACAAAAACTAA ATATGTGTTTTGTTGACTAAATAAACATTTTATAAAACTACTCAAATTAT CAACGCTAATTGGTTTCCTCCTGTTTGGTGGCCattgaaaaattattctt ttcaaaacaatgataaggaAAAATAAATGCACATAAATACGCATAAATAT GCATTAATGGGTCATTGTTTTCATGctgcaatttttaatttttcaacatg CCATCCctactagcaaaaggtctattcaagGTCTGTGCAGGCCGTCAAAC AAAGGGAACCCGGACATGGATATCAGGTTGTCTTTTGGTTTTTAAAGCTG CAAAGCGATCGAAAAGAAACATGGAAAAGGACAatttggcatggaatgaa cTTCTCTAAAATCGATATTTCGAGTGATTTGCATACCATGAATAAACATC CACCTACCAGGGCCTGAAATAACGGTGGGACATCAGaattgtccgaccca attgctgGAATGTCTGACTAAATTAGATTCTGGTCAAACATAATATCTGT CCCATTTTCTTTTCAGTTCcctttaaaaattgaataaagttaaaagattt gacttaaaattaaaatttgaagttaGCAACTTCCTTTATTTACACAAAGA AACTCTCTGCAGTTAAAAATTTCCTCTATTCTTTGTGTCTGAAAGCAAAC AAttcattctttttcaagtttGCTTAAGTCAAAATCATTAGTTCCTGAAA ATTACCAAGGAGTCTGTTTACCTTCTTTGTGATCAATGCAAAATTTTACA AGAAGCTGGTATTAGACTAAGGTATTGGGGGCCTAtaaatttggaaataa attGTGGAACACCAGGTGAATTTTCATTCATAAAATAAAGACTACCCATA AATTGCTTGTAAGAAACGCAGTAGGTTAAGATAAAGAGTCCTGTCTGAGA GGGAGAAGTAAAAGGATCTTGGATGTATCACAGATTTTAGATCAATTTGT AGTacttcttcaatctttatataaTATCAGAGTACTTTAGCACAGATTaa acaatcaaaatctttttcttagCAAACCTAATATTGTTGCTACCAGtaaa cattttgaaacttttaactttatttttctaTCATAGGTGTTCCTCGCTCA TTTGTTTTTCACCGTGGAGTTGTTGGAAAGACAGTGGTCAACTTGGTCAA TGACATCAAACATGTAATGCAGCCTTTTACAGCCTTGAATCTCAAGGTGA CCAAAAATAATGTTCTAAAGGACTTCGTTCATGTAGCTGGACCATATGGT GTGactcattttatcattttatccaAAACAGAAAAGGCACCCTATTTAAA GATTTGTAGACTCCCTAGAGGCCCTACACTGACTTTTAAAGTGAATGAAT ATTCTTTAATGAAAGATGTTATTAGTATCTTAAAAAGACCAAAATCTCTT GATCAACAATTCAAGCACCCCAGTCTTGCAGTACTGAATGGATTCAGTAA TGAAGAAGCACACACAAAGTTAATGTCAACAGTTTTTCAAAACATGTTTC CTCCTCTGAAAGTTCAAAAGGTCAAATTGAGCAATATCagaagatgtagt gtttttgaTTATGATAGTTCTACTGGTTTGGTGGAGTTTAGACACTTCCA TATAGAAGCCAAACCAACAGGGCTCAGTCGTGGtgtgaaaaagcttttga aaaacaaaatcccAAACCTCGGCAAACTTGAAGACATCAGTGATTTTATG GCTGGTGGTGCATACCTTTCAGAAAGCGAGGGAGAAGAACCTGCTGAGTC TCAAGTCACCCTACCACAAGCAGTGCGAGGACGTGGAAATATGAAGTCGT CACAAAGTGCCATTAGGCTTACAGAAATGGGTCCAAGACTTCAATTGATG TTGCTAAAAATTGAAGAAGGAGTTTGTGAGGGAGAAGTGATGTATCACAA GTACGAaagcaaaacaaagaaagaaatgaagGAACTTAAAGCACGTAAAG TTAAAGCTAAAGAAGAGAAGGATAAACGCAGGCAAGAGCAAGAAGGAAAT GTTGCACGCAAACAACAAGCAAAAGAAGATCACAAGGAGAGGAGTTTGGC TGGCATGAAGAGAAAAATGGAAGAATCAGGGGAAACGCAGGAAGGATCTA GTGAAACTGTGGAGGAAAATGAGAAGCAAGATACCTCAATGAGTgaaaca gaagaagaagaacaggaagaagtcgagctaacaaaaccaaaaaagaaaaa gagaaatatacctcctcaaccaaaatccaaagcaaaaccagctggcaagt ttagtaaaacaaaaggaaagaaacatttaaagcataaaaaatga

Coding sequence (CDS) from alignment at sc0000017_pilon:1395667..1403460+

>XLOC_035361 ID=XLOC_035361|Name=XLOC_035361|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2538bp|location=Sequence derived from alignment at sc0000017_pilon:1395667..1403460+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAAACAACGAAAGAAGAAGAACCTTCCAGCTCAAGATGAAGTTCA
GGACACTACAGATGGGTAAACAACGAAAGAAGAAGAACCTTCCAGCTCAA
GATGAAGTTCAGGACACTACAGGTGTTCCTCGCTCATTTGTTTTTCACCG
TGGAGTTGTTGGAAAGACAGTGGTCAACTTGGTCAATGACATCAAACATG
TAATGCAGCCTTTTACAGCCTTGAATCTCAAGGTGACCAAAAATAATGTT
CTAAAGGACTTCGTTCATGTAGCTGGACCATATGGTGTGactcattttat
cattttatccaAAACAGAAAAGGCACCCTATTTAAAGATTTGTAGACTCC
CTAGAGGCCCTACACTGACTTTTAAAGTGAATGAATATTCTTTAATGAAA
GATGTTATTAGTATCTTAAAAAGACCAAAATCTCTTGATCAACAATTCAA
GCACCCCAGTCTTGCAGTACTGAATGGATTCAGTAATGAAGAAGCACACA
CAAAGTTAATGTCAACAGTTTTTCAAAACATGTTTCCTCCTCTGAAAGTT
CAAAAGGTCAAATTGAGCAATATCagaagatgtagtgtttttgaTTATGA
TAGTTCTACTGGTTTGGTGGAGTTTAGACACTTCCATATAGAAGCCAAAC
CAACAGGGCTCAGTCGTGGtgtgaaaaagcttttgaaaaacaaaatcccA
AACCTCGGCAAACTTGAAGACATCAGTGATTTTATGGCTGGTGGTGCATA
CCTTTCAGAAAGCGAGGGAGAAGAACCTGCTGAGTCTCAAGTCACCCTAC
CACAAGCAGTGCGAGGACGTGGAAATATGAAGTCGTCACAAAGTGCCATT
AGGCTTACAGAAATGGGTCCAAGACTTCAATTGATGTTGCTAAAAATTGA
AGAAGGAGTTTGTGAGGGAGAAGTGATGTATCACAAGTACGAaagcaaaa
caaagaaagaaatgaagGAACTTAAAGCACGTAAAGTTAAAGCTAAAGAA
GAGAAGGATAAACGCAGGCAAGAGCAAGAAGGAAATGTTGCACGCAAACA
ACAAGCAAAAGAAGATCACAAGGAGAGGAGTTTGGCTGGCATGAAGAGAA
AAATGGAAGAATCAGGGGAAACGCAGGAAGGATCTAGTGAAACTGTGGAG
GAAAATGAGAAGCAAGATACCTCAATGAGTgaaacagaagaagaagaaca
ggaagaagtcgagctaacaaaaccaaaaaagaaaaagagaaatatacctc
ctcaaccaaaatccaaagcaaaaccagctggcaagtttagtaaaacaaaa
ggaaagaaacatttaaagcataaaaaatgaGTGTTCCTCGCTCATTTGTT
TTTCACCGTGGAGTTGTTGGAAAGACAGTGGTCAACTTGGTCAATGACAT
CAAACATGTAATGCAGCCTTTTACAGCCTTGAATCTCAAGGTGACCAAAA
ATAATGTTCTAAAGGACTTCGTTCATGTAGCTGGACCATATGGTGTGact
cattttatcattttatccaAAACAGAAAAGGCACCCTATTTAAAGATTTG
TAGACTCCCTAGAGGCCCTACACTGACTTTTAAAGTGAATGAATATTCTT
TAATGAAAGATGTTATTAGTATCTTAAAAAGACCAAAATCTCTTGATCAA
CAATTCAAGCACCCCAGTCTTGCAGTACTGAATGGATTCAGTAATGAAGA
AGCACACACAAAGTTAATGTCAACAGTTTTTCAAAACATGTTTCCTCCTC
TGAAAGTTCAAAAGGTCAAATTGAGCAATATCagaagatgtagtgttttt
gaTTATGATAGTTCTACTGGTTTGGTGGAGTTTAGACACTTCCATATAGA
AGCCAAACCAACAGGGCTCAGTCGTGGtgtgaaaaagcttttgaaaaaca
aaatcccAAACCTCGGCAAACTTGAAGACATCAGTGATTTTATGGCTGGT
GGTGCATACCTTTCAGAAAGCGAGGGAGAAGAACCTGCTGAGTCTCAAGT
CACCCTACCACAAGCAGTGCGAGGACGTGGAAATATGAAGTCGTCACAAA
GTGCCATTAGGCTTACAGAAATGGGTCCAAGACTTCAATTGATGTTGCTA
AAAATTGAAGAAGGAGTTTGTGAGGGAGAAGTGATGTATCACAAGTACGA
aagcaaaacaaagaaagaaatgaagGAACTTAAAGCACGTAAAGTTAAAG
CTAAAGAAGAGAAGGATAAACGCAGGCAAGAGCAAGAAGGAAATGTTGCA
CGCAAACAACAAGCAAAAGAAGATCACAAGGAGAGGAGTTTGGCTGGCAT
GAAGAGAAAAATGGAAGAATCAGGGGAAACGCAGGAAGGATCTAGTGAAA
CTGTGGAGGAAAATGAGAAGCAAGATACCTCAATGAGTgaaacagaagaa
gaagaacaggaagaagtcgagctaacaaaaccaaaaaagaaaaagagaaa
tatacctcctcaaccaaaatccaaagcaaaaccagctggcaagtttagta
aaacaaaaggaaagaaacatttaaagcataaaaaatga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035361XLOC_035361-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000017_pilongenomesc0000017_pilon:1395667..1403460 +
Properties
Property NameValue
Aaloc64-1269:6589
Aaloc1-60:1