XLOC_035241 (mRNA) -

Overview
NameXLOC_035241
Unique NameXLOC_035241
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000252_pilon:233328..240294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035241 ID=XLOC_035241|Name=XLOC_035241|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6967bp|location=Sequence derived from alignment at sc0000252_pilon:233328..240294- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGTTTTGATCAACGATGGGAATGCTGAAAATGAAGACATTGTCAA ATGCGACATCGGTGAATTGGTCTTATCTGTCGAATTGTTGAAAAATCAAG TGTCACCTTTTATCAGGATATTTAACAATACTAGATCTATCTTAAGGTTT GTGTTCATTCTCTCCCCTTACTTTACGCGTACAAACTTTTGCGAGCAGAA ACTTTCGCGATTTTTGCTACTTTTCGCCTTTTTTGTGAAAATCTTTGAAA ATTGTTAACAGGGTAATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTAA CAACTTTGAAAATCTTCTTCTAAATTAAAAAAGAAAAACTTCTAAATTGT GATAAACAGCAAATTTTTAGCCTTTTTAAAGTTAATGAATGAACAACCGT ATTTATCAGATTTAAGGAACGTTTGTCACTTTTTAGCCAATTTCCGTTTA AAAATTGATTGAAAACAGGGAATTTCTTCACAATCTGCATAATTTATGCA AAATTTATGCATAATTTATGCAAAATTATAGCACTTTTTCCACAAAAACG CCCATAGCTTTTGATCTAAAAAAGTTGAGACTTTGATATAATACATTTTT TTGCTCAGTTTGAAGAGCTCTATCATGTGGTATAGGTCTTTTTTGATTTT GAAGACCCCCTAAAAAATCATCAGGACTTACAATTCTGCCTAAAAAAGCA AAAAATTGCAAATTACGCAAAAACTGCGGATTTTCAAGCTTGGTAACATT TAAATTCCAAATCAGCACCCTCAAATTGACTAGAATCAATGGTCAAAGCT TGTTCATCGGCATTTTGAAAAAAAAGTGAAACGTTTTGAGAGGGCTGGTC ACGGCCTATTTTACTCGTACAATATAGGATAATCGCACTCCTAAAGGCTT CGAAAATATGACGAAAAAATCTGAACTCGAAAAATATATCCCATATTATA CTCAGTACCGTGCGATAACTATTACTTATTTGCTTACAAATGAGTAATTC CAGGCTCTTATTTTTTAGCGATTTTGAACCTTGTTGTTCTTATGAAATTG TTGTTACAAAAAATATCGTATCTTCAATTTGATGAGTTTTTTTTCATTTT CAGATGGGAAAGACCATTGCGCACGATTTCTGTGATGTTATTTTTATTGT ATGTCGTCATACTTAACCCTCGTAAGTTTGATCAAGTGCAACCGATTACA AAAGTATCCATTACCAGGGGATTTCGTTTGGTATCTACGTCTTTTGGTCA AGAATTTGTTGTTTTTCTATTTCGTTATTCCAGACTAGTGCTCAACAAGT GATAAGCACTGTGCGCATGCAATGTATCCGGAGAATCTCAATATTAAAAA CTAGAGCAGTGCTCGTATCCTTAAGAGCAGGAGTTTTACGCTCGAAACGA AGGAAGATATGACGTAGCCTATAAATTACTTTTGCAAATAAGTACCTTGC ATTTAAAACATGCTCAACCATCGATATTTTTTTCAGTATATATTATGCTT TTGGTGTTGACTTCAATTTTACCCATGATGGTGTACGGTCTGGTACAGTG CTTAGGAAAAGCCAAGCGGCCGAACAAACGATACAAAGATTTCTTCATTA AGAAAGGAGATGATTATTATCAGGTGAGCCGGTTTTCTCTACTCATCATC ATATTCATCATTATCATCATCCTTCGATCTAGGTCTGTGAAGACTAGGTC GGTTTTCTACCAGCACTTGGGTCACACAAGGACTTTTGATAGATTGGGTG AGAAAACTAAGTTCAGCCAAAAGTAGTAGTCTAAAAATTAATAAAGATTA AAGTTTGGCCGATTTGGCACCATCATTGGATCCATTCTACACAAAACATG AATGTGTTTTATCTTTGTATTTGATGAGGACTCAAATTATGCCGTCCAAA GAATTAAAGAAATCGAACTCTGCACCTCACAAAACTTTCATATAAAAGCA TGACTTTGAACAAAATTGAAACATTTTCTTTTAGGATGTGTTGACACAAG AAGAACGAAGGAAACATTTGAATATGTATCTCAACATGTAAGAAAGTTTG TGTTCCCTCTCCCCCCTCTCCCCCCATCAACAATCAATGATGAAATTGAA TGCGTTATGCATTTTCGCTAAACGCTATATTTTCTGACTGATGGTTTTCA TTTTTCTCCTTATTGCTATCTAACTTTCATCGTCATCAGGTAGGTCCATT CACCATCTAGCTTGTTGAGTTTTATGCCTAAAAATGTTTTGTTTTAGTTA CATTTTATTAGTGTTCTTGTCCGTTTTTCTAATAATTCGGGTGTTTTTTA GAGCCCTCAAAGCCTTTAAATGTTCTTAACTTGTTCTTAACATTTTTGCC ATAATAAACGTGTACAGACATATTTTGAATTACGGAGAGTTAAAAGACTT AAAAGCTAAGTGGACTATTTATACACTGACTTTCATGTTGAAATTTAGCT ACAGTTGACTCTCTCTCTATTTCAATCTTTCCAAAAGCAAGGGCTATTTT TTCCAAATTAAAAAAAGATTTGATTTAAGGAGAGTATTTCAGACGACTTT TAAGCTGAGTGTAGCAATGTTTTAGTTCGAATTACAGAAAGATTCGAAAA TGGTAACAGAGAGTTGATTATAATGTATTTAAATGTTTTATTTTTATCTT TTAGGCTGGTGCAAACTCAAAAGGGATGCAATGAACTCAATAAAAGATTT CATCAGTTTTATAGCATCATATTCTGGCATGAGAAGACACGATCGTTAAA GTATTTCTCTTGTTTTATCAATTTCGATTTCATAAGATTTAAATTTGAAA ATCTTTTAACGCAGGCTTGTCACAGCCTGGTTTAAATCCTACTAGGTCCC GAATAAACGTCCTCACCCGGTTATTCATTTTCGAAAAACTTTCGGACCCC CCCCCCCCCCCCCCGTTCTTATTAGGACCCCCTCTTCCCCGTTTATCTAT TTTTGAAAATATTTTCAGCTGAATTGCTCTAAATAGCCTGTTTTTAGCTT GTAATCTTGGGATCTTAGAGTACTATAGCAAGATTTTACATAACGTCAAG CCACTTTAACTGCTTGAAAAAGATGAATAAAACATAAGTTTACATTTTAT CTTCCGTTCAGATACTTCATGATGTTCACAGCATTGGTTGTGTTATTCTA TACATCTTCCATGAGCCACGCTTTATTCATCAATATTCTTCTTCTTTTCC TCTACAACAAATATCTTTACAAAGGTAAAAGTTATTGAAATGTCTGACTG TATCAATAGCCGAGTTTTCCTAATTTTTAAATCTTAGAGGGTATTTTGCA GTTTTTGAGAAAAAAATGGCCAACCTTAAGTACCTTAAAGCACCCTAAAA TTAATTTTTTAAATAAATGACCTATTAAACGGATTCAGGATTCTCTCTCA CCAAAATACCCATTACTTTTTGTGATTTAGAAACAATGAATACATTGTAC CGAATGAAAGCAAGCATAATGAATCTTTTCACTTTGAAATCACACTCAAA GAAGAAAGAAAGTGCTTCGGAACACACCACTGATGTTGGGCTAGAGACCA TCGATTCTTCGGAAAGGGTAAAATTTTCTATTATTTCCGTTGCTCTAGAA CGCTCAGAACGTTCTTGATTAACTAAAAATTATGTGTTTAAAAAAAGAAA GCAGTCAGTGAAAATAGTCCGATTTGACTGAAATTTTGCACAATTTTTTA AATCCTCCGGGTTTTTTCTAATTTTCAATTTTGTGTTCTGGGGATCAGTT TTGTGATACACAGAATCTATAATACTAAACAGCTAACTTAATTCTAGACT TAAACTCAATTTTACCTATAAACAAGATTGGTTCAAACGTTACTGAAGTT GAGTCAATACAGCTAGGACGGTCAACAATATAAAATGAATATGACTGTTA AGACTTTGGGACGCGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGC TCCATCCCATCCCACCAGCACAAGAAAAATGTGCGTGTCTCATGGTTTCT TTCTTTGTTTCATGGGACAAAAAGTGAGGAAAATACCCAAAAGACACGCT GATTTTGTCACAGGGACAAAAGTGAGAGAAGCACAAATGTTATTAAAAGA AAAATGGGGTGGCGACGCGAGAAAGCGTTTCAGGTTGGTGGGATGGAGCA TGTTGCATTGCACCAACGCGAAAAAAAACTTATCGTGTCCCCAAGCCTTT AGACCTTTCAAACTGACATATAATTTTTTCTTTACTATAGAGCAAGGAGG TAGAAGGAGGAGATTCGAGTGCTTCCACATCATCAGAATCAGAGAGCGAT GAAAGTGAAACAGAAGATGGCAATGATATGGTATGTCCTTTTTCACAAGT ACTCAGGACGGTTTAATAGAGTTATTTCTCACGTTAGTTATTTACGTAGT TTTGGACTTCCATACTCAGGGACAGGGACCTATAGGATAAATACAACTCA TGCACTATTTGATAGCATCAAAAGAGAAGGATGGTGGGTTATGGGGATGC TAATAAATAAAGGCCAAAATTCTTGGTGAAATTATGGCACTTATTTTCAA TATTTATCAAAATACAAAAAGAGTTTTTTCCTTTTTCTATACTAAAGCTC CTATCCATAATTTAGTTGATATACCATGATTGACGTATATTTTGATTTGC AGAAAATTTCACAAAGTGATGCGCAGAAAAACATGGCTGATAATGGTAAC ACTCTTTTGTATTATATTATCGAAGCTAAACGTACTTTCATTAATACTTT TATCGAACTACATTACGGTCGAATGTTCAAATTGTTCTCTTCTTAAAGGT TTTATTTTTTACATAAGTGTTCCCGTTTCATATCAGCCACATGTTTCGTA TCAGGACAGTGTCTGCCTATTGTTATATTGTGCTGATATAAGCAAAAATA TGTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTGTAAATT CAATATCAAAAAGCTTATAAATTAAAATTGACGAGTAAGCAAACGACATC ACTCCTATTTTCCATTGGTAAACGTTATTATATTTCGTTTTTATAACTCG AAGCCCTCGAACTCGCTCCTTGATTTAAAAGACTCCTGATCTGAGTTATA GAGAGACTTTAGAACTTCATACTGTTTATGTTCTTTAGGTTCAATGATGT CAAAATTCTTTTCAACGCGAAGTTGGCGCAAAAGAACTACAGGTTAGAAA TACTCTTAGATAACAGTAAACATAGCATATCCCATCCTCTAAATTCACTT ATTCAGACTTCTTGTATAAAAATAAGTTTAGTTTAATTGATGCGGAATTA TTGTAGCGAATGCTATGCTGAGGCATGGCTGTGGACAGCATTATAGTAGA GGGCATTTTGTAAAATCGCATGACTGTTTTGTTAGAAGCACTTGTTATAC ATTTTTGGAAAGCTAAGGGGTAGGGGAATCGAAATTACTATGTTTCCAAT TTTTTTTTCGGACACTTTGGTGTGATTTTCGGACAAATATGACGGTCTCA GGCAAAAATCATAGGGTTAAAAATTAATGAAAATTTTAGCTCGAGAAAAC GGAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTAGGATTAGAG ATATATTGCAAGTATAGGTGATTTCAGTACCTAACTCGAGATATTGAGCT TCAAAAAGCGCAAAAACCGGACAAAATAGCTGTTTCTGGCTGAAAAACAC GGTTTTCAAGGGTTAATATCTCGAGTTAGGTACAGAAATCACCTATACTT GCAATATATCTCTAATCTTAATTTTTTGAGAGCTTTCCAAAAATGTACAA CAGGTTTCCGTTTTCTCGAGCTAAAATTTTCATTAACTTTTAACCCTATG ATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCACAGTGTCC AAAAAAAAATGGAAACATATTAATTTCGATTCCCCTACCCCTTAGCTTTC CAAAAATGTATAGCAAGTGCTTCTAACAAAACAGTCGAGCGATTCCAAAA AATCGAACAAAATTCCCCCTACTATTAATAGATTTAGAGACAAGTTGATG TACGAGTATTGTAATATCTTCAGAATTTTCTTCTTATAGCACTTTATATA CGAAGTTAGAAAGCTCACAACTGAGGTACCATTATGGTTCGGGAAAAAGA AGACTGGAACCGAGACATATGAGACTAAATGTCCGGTAGCGACTAATGTA AACGAAAGTGGTTGTTAAAATATCGACAGCGAAAAACAGCCAAACCACGT TCGCACATTTCCTGATTCGATATTTGGCATTTATCAATTCGATCTGACAT TATTATTCGTTTCTTTTTCTTCAGAATATTGTTCTTCGTGTTATCAAACA GTTTCCTCCCTTCTTAAGAAACGGGTAAGACTATAACGTTGTGTCATTTG TTGAACATTTTCCACTAAAGATGTTCGAGTTCACCCAACCAAAAGATTTT CTGTCAAAAGGATAAAACATTTCTCTTTTTCTTTTCATTTCAGAGATATT GTCGACACTGTGGAAAAAGTTTTTGTTCAAAGTGTTGTCACATTCGTGTT CCCAGAGCTTTGATTGGTGCCACTGGTAAGTAGTTTAAAAATATTTTAAA TTCGAACTTCAGAGAGGTGTCTGGCGTATTTTTAGTCGTGCAAGAATAAC ATCAGTCAGTTAATAGTCTCAATCATAGAGAAGGGCTAGATGTCGGGTTT TAAGCCATCGCAGGCAAAAAAAACTTGAATATTGGAAAAAATATTGTTGC TATTGACGTTTCCGAAAACCCGCGAAGCTTCTGATTGGTCAAGCGCTGAA ATTCTATTGTAATGTCACGTGACTTAGGTAGTAAGTATCATTGTTTCCCA TACATTTTCCCTTTCGTTCTAGCACCTGCTGCTTACCAAGAGAAAGTATT GGTTTGTCAATCTTGTTATAAATTTCTAACGAACCGTTCGAATTCTACTA CGGAGATTGTCGAATGA

Coding sequence (CDS) from alignment at sc0000252_pilon:233328..240294-

>XLOC_035241 ID=XLOC_035241|Name=XLOC_035241|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0000252_pilon:233328..240294- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGTTTTGATCAACGATGGGAATGCTGAAAATGAAGACATTGTCAA
ATGCGACATCGGTGAATTGGTCTTATCTGTCGAATTGTTGAAAAATCAAG
TGTCACCTTTTATCAGGATATTTAACAATACTAGATCTATCTTAAGATGT
CAGTTTTGATCAACGATGGGAATGCTGAAAATGAAGACATTGTCAAATGC
GACATCGGTGAATTGGTCTTATCTGTCGAATTGTTGAAAAATCAAGTGTC
ACCTTTTATCAGGATATTTAACAATACTAGATCTATCTTAAGATGGGAAA
GACCATTGCGCACGATTTCTGTGATGTTATTTTTATTGTATGTCGTCATA
CTTAACCCTCATGGGAAAGACCATTGCGCACGATTTCTGTGATGTTATTT
TTATTGTATGTCGTCATACTTAACCCTCTATATATTATGCTTTTGGTGTT
GACTTCAATTTTACCCATGATGGTGTACGGTCTGGTACAGTGCTTAGGAA
AAGCCAAGCGGCCGAACAAACGATACAAAGATTTCTTCATTAAGAAAGGA
GATGATTATTATCAGTATATATTATGCTTTTGGTGTTGACTTCAATTTTA
CCCATGATGGTGTACGGTCTGGTACAGTGCTTAGGAAAAGCCAAGCGGCC
GAACAAACGATACAAAGATTTCTTCATTAAGAAAGGAGATGATTATTATC
AGGATGTGTTGACACAAGAAGAACGAAGGAAACATTTGAATATGTATCTC
AACATGATGTGTTGACACAAGAAGAACGAAGGAAACATTTGAATATGTAT
CTCAACATGCTGGTGCAAACTCAAAAGGGATGCAATGAACTCAATAAAAG
ATTTCATCAGTTTTATAGCATCATATTCTGGCATGAGAAGACACGATCGT
TAAAGCTGGTGCAAACTCAAAAGGGATGCAATGAACTCAATAAAAGATTT
CATCAGTTTTATAGCATCATATTCTGGCATGAGAAGACACGATCGTTAAA
ATACTTCATGATGTTCACAGCATTGGTTGTGTTATTCTATACATCTTCCA
TGAGCCACGCTTTATTCATCAATATTCTTCTTCTTTTCCTCTACAACAAA
TATCTTTACAAAGATACTTCATGATGTTCACAGCATTGGTTGTGTTATTC
TATACATCTTCCATGAGCCACGCTTTATTCATCAATATTCTTCTTCTTTT
CCTCTACAACAAATATCTTTACAAAGAAACAATGAATACATTGTACCGAA
TGAAAGCAAGCATAATGAATCTTTTCACTTTGAAATCACACTCAAAGAAG
AAAGAAAGTGCTTCGGAACACACCACTGATGTTGGGCTAGAGACCATCGA
TTCTTCGGAAAGGAAACAATGAATACATTGTACCGAATGAAAGCAAGCAT
AATGAATCTTTTCACTTTGAAATCACACTCAAAGAAGAAAGAAAGTGCTT
CGGAACACACCACTGATGTTGGGCTAGAGACCATCGATTCTTCGGAAAGG
AGCAAGGAGGTAGAAGGAGGAGATTCGAGTGCTTCCACATCATCAGAATC
AGAGAGCGATGAAAGTGAAACAGAAGATGGCAATGATATGAGCAAGGAGG
TAGAAGGAGGAGATTCGAGTGCTTCCACATCATCAGAATCAGAGAGCGAT
GAAAGTGAAACAGAAGATGGCAATGATATGAAAATTTCACAAAGTGATGC
GCAGAAAAACATGGCTGATAATGAAAATTTCACAAAGTGATGCGCAGAAA
AACATGGCTGATAATGGTTCAATGATGTCAAAATTCTTTTCAACGCGAAG
TTGGCGCAAAAGAACTACAGGTTCAATGATGTCAAAATTCTTTTCAACGC
GAAGTTGGCGCAAAAGAACTACAGAATATTGTTCTTCGTGTTATCAAACA
GTTTCCTCCCTTCTTAAGAAACGGAATATTGTTCTTCGTGTTATCAAACA
GTTTCCTCCCTTCTTAAGAAACGGAGATATTGTCGACACTGTGGAAAAAG
TTTTTGTTCAAAGTGTTGTCACATTCGTGTTCCCAGAGCTTTGATTGGTG
CCACTGAGATATTGTCGACACTGTGGAAAAAGTTTTTGTTCAAAGTGTTG
TCACATTCGTGTTCCCAGAGCTTTGATTGGTGCCACTGCACCTGCTGCTT
ACCAAGAGAAAGTATTGGTTTGTCAATCTTGTTATAAATTTCTAACGAAC
CGTTCGAATTCTACTACGGAGATTGTCGAATGACACCTGCTGCTTACCAA
GAGAAAGTATTGGTTTGTCAATCTTGTTATAAATTTCTAACGAACCGTTC
GAATTCTACTACGGAGATTGTCGAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035241XLOC_035241-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252_pilongenomesc0000252_pilon:233328..240294 -
Properties
Property NameValue
Aaloc1072-1164:94
Aaloc988-1068:475
Aaloc940-987:642
Aaloc886-936:1828
Aaloc841-882:2316
Aaloc751-840:2728
Aaloc616-750:3536
Aaloc502-612:3856
Aaloc406-498:4313
Aaloc352-402:4984
Aaloc217-351:5480
Aaloc148-213:5864
Aaloc1-144:6968