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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000349_pilon:33062..38658+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_035185 ID=XLOC_035185|Name=XLOC_035185|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5597bp|location=Sequence derived from alignment at sc0000349_pilon:33062..38658+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAAGTGATAGCGAGCA
GTCATGTTCAAAAGACGATACGGACGATACAGACACAGATGCAGATACAG
ATATAGATCTCTCTGAGCCTTTTTCagaagatgaagatgatgagCAAGGT
TTGTTTGGACTTCAGACTTAGAAAAATTTCACAGTCTAGCAGGGCAAAAG
GTCATTTACCACTTAAAGGGAACAGtttttttctgcgggaactaaatttt
taCGGATTTCCAAATTACAAAAGGAATTTCTGCTGTTTGTGTGAATTATA
TACCctcaatttttctcatttttaaaaaatctgttcTTCTCAGAAAATAT
GGATATTGACGAAACTCTACTCAATTCACCTGATTTGAGGGATGATGATG
AACTTTCTTCAGATGATTCGTTGCCATCTGAGATAAGTGACCAAAGCTTG
TCAGACGAAGATGTTCCAGTATCTGACGATCTCCATCATATATTCGAGAT
GCTTAACCTCGACTGTGAATATGAGGATTGGTTAGAAGAAACTTACAAAG
ATGGATTTCTCACGTATGACGGTTCGTATTCTTTTTTCCTCGGGTACTTA
ATAAACGGAGGTCTGGAATAAGCGGGGCggataaaaaaatcttaaactTT
CGGCAAAAGGCAATCTCGAAAAATTCCACGGCGGCGAATCTTCTTCTTGG
GGTTAAAGGTTTTGTAGCATGTCCCAGACGGACACAGACACGTCCCTGCA
CAGAGTGATGAAAGAATGTCGAGAGAAATTTTCTGGGGTGTAATTCTCAA
TACtaaataattctttttataGAGCCGTCATGTATCTTTTTACCTGTAGA
AGATTCCGTGCTCAAACAACCAGTTTATCCGGGCGCTGATTTCACGCTGA
TGGACGTATTAGCAAATGAACTTATGTGGTTTGCATCTACCCCGTCGCTG
AGTAAAAACGCACTTCAAAAACAGTTAAAGCTTAAAGCAAAAACCTATCC
GAAGGGAAATACCTATCCTGATACACTCCACAAGGTCTTTGCCCTTGTCG
GTCCTTACATGATACCACTAAGGCGGATTGAACTTTGCGTAAATGACTGC
GTTGCGTTCGAACGCCAATACATATCTTTAAAGTCGTGTCCTGCCTGTGG
TCAAAGTCGGTATTCGTCCAATAATTCAGCAAGACGAGtttttttCTACA
TGTCAATGAAGGATCGCATTAGAAGACTTTTTGCAAATTATGAAACTTCC
AAACTTCTACAAAGTCACGCAGAAGTAAAGtacgtttttttattaatttt
taaatatttccttttaggggaaatatttgttaaaacaggctttttttctt
cttctccttcttcagGTTTCActgctttttgaaatttggtgaGTTTTGTA
CGCTCCTGCattcgatgaaatttgaatcccacttgaaaattgaattagag
agcgtaaAATATCAACAGACTTTTTGCATAGTCTAGGGATTCGTAATTTT
TCAGCTGAGAAGAGGGTTGACGAAATGCCaatgaatataaaaaatctaag
aacataaGAACATAGATTTGTCTTACTAGATTGCAAAATGTTATTCACGA
TGTTCACGAAACAAAAAGATGGGTACCGAACACAGAAAACCCGAGAAAAG
TCAACCTGATTTTGAATACGGATGGTGTAAACCCGTACAGCATCAGATGC
AATTATTCAATGTGGCCAgttattttggctatcgaaaaCCTTCCGAGGGC
TGTCCGGTTTGATCGTAGTAATCTCTTACTCGGTGGCATAATTCCTGCAT
GGAATGACGGGAAAGAAACGCCGAATATCAATATATATTCACAGATATTG
ATCAATGATATTGAGGACTGTCAAGATGCCTTAACCTACGATGCATACAG
GTaaggtatttttttttcatgaaatcaGATTATGTCAATTAGCTGCGTTC
TTTGCGGCTCTGGAGGACCCCCGTCTTTTACGGAATGTAATCTTATTTCG
GCCGAATTTAGTGCTTTGGCCTCTTAGTTCAGCTAAAAAAGGTCGAATCC
TTTGCATCGGAATGAGGTCTAGGACCGCCATCGGGAGTCAGCCCAGTGGG
GAGGGGATCAAAATATGCTGAATTCCCGCTGAACTAAGGTTCCAGTTACA
GCCAGAGACCAAGATTTGCATTTCACTGCTTTTCAGAGGTGATTGGTTCC
ATTTAGAAGTATCGATAGTAAAATATGTACTCGATTACCCTGGCATCAAC
AAATTATTTCACTTATCTGGATCGGGCGCTTATTCTGGTTGCACATGGTG
CGAcatcagaggttaatatattatgatcattttgttgttttcatcGTTTC
AATAGTTTCGTAGAAACTATTAAAAAGGCATTTTTTATTAAATGAAAGTC
TGAAGTCGCTCTTTTTGCACTTGCTAGTTGTTAGttgttttattcttttc
aaGGTTTATACCTGAAAAACTCGAGAAAGATGGTATACATTGGGTATCGG
AATTACTTGCCAGCTGACCATCCATTAAGAAATGACGCAGGTTAATAATc
cattcatttttttcactttttatagGTAAATTTTCCTTGGGTAGCTAGTT
TCGTGAATTGAGATTTTGgctgaaaatataataaaactttcgcgaattca
aaaaatttaacttttttaaaacaaaaactcgctaaacacgaaaaGAATTA
ACAATCAGAGCAAAAACGGGCGTGTATGTAAATACTTAATCCCTCACGTT
GTCGACCGTAACCCCCTTTTAATTTTAGTATTCCGTTATAAATGCGAAGA
ATGTCCGAAATGCTACTCTACAATGGACTACAAGAAATTCGAAGACGAGT
ACAATGAAGGAAATGATAAAGAGAGGGTAAAGCATACCAAAAGGACCGGA
TATCATGGGCCAACTCCATTTAATCAAATGCCAGTAAGAGAAAATAACAT
CGATTTGATTATAATTATTTTAccttatagtagggggaaatttgtaaaat
cgctcgacttttttagtcaaagcacttgttatacatttttggaaagctaa
ggggtaggggaatcaaaataacttgggtgccaattttgcttcggacactt
tggtgtgattttcggacaaatatgacagtctcgggcaaaaatcatagggt
gaaaaattagtgaaaattttagcttgagaaaacggaaacctgttgtatat
ttttggaaagctctcaaaaaattaagattagtgatatattgcgagtatat
gtgatttcagtacctaactcgagatattgagcttccgaaagcgctaaaac
tggacaaaacagctgtttctggctgaaaaacactgaaaaacactgttttt
aaggattaatatctcgagttaggtaaagaaatcacctatactcgcaatat
atcactaatcttaattttttgagagctttccaaaaatatataacaggtct
ctgttttctcaagctgaaattttcattattttttctccctatgatttttg
cccgagaccgtcgtatttgtccgaaaatcacacctaagtgtccgaaacaa
aattggcacccaagttattttgattcccctaccccttagctttccaaaaa
tgtataacaagtgctttgactaaaaaaatcgagcgacctcaaaaaaacga
acaaatttccccctactatactTCTACTGTTCAAAGTGGGAGTAGtaatt
tttctacttttcaaCTGTTataataaatattcttatacaaattgtttcca
cactATTAGGGGTTCGATTTTGTCAAACAGATCACGCCGGATCCGATGCA
CACTCTTACCAACATCGTTAAGAAAATTGTAAGCTTTCTAGGGCAGAGAA
AAGGAGACATCGAAAAGTTCTTGAAGGATGACAATCTGCATAAAAGTAAG
TtatgtttttgcatttttatctACCCGCGATCTCTTAGATCTTCTGTCGT
AGACCGTTTCTTTAATCAAAGATACCAAAAGACCTGTGAAATACGCACTT
CTGTATACAGTACATAGTAAAACATAATTCAAACTCATCTTGTAGATTTA
ACCGGAGAAGAACGCTTTCAACTTACCTCTGAAGAAATCAAAATTGCCGA
TGAAAAAGTTTCCCTTCTGGCAGTAAGTTCATTTCTTTTCCGCGAGGCCA
TGACAATGACAATGTAGGGACGAAGTAAAGGGGCCAGATTACCCAATTAG
AATCGAAATTCTCTCTTTTATCTGTATGTAAACCTTTTCCCTAAGAAACG
TTTTACCTCCTTTTTTCAGAGAGCAAAGAAATTACGGGTGAATTCTAtat
tcaagaaagaaaaaccACTTTTGAAATCGCATGACTGGCACAcggtaaga
aatttttttgagggtCCTTACTTTAGCAGAATTTCTTTTCAATGTAATAG
CTGTAGTCTGTATCTCCGTCTTTCTGTGAATCGTCTCTTTCGTTTTCGCT
CTCAACTAACCCGATAAAAGTATAGTCCCGAGTATCCCggctagtttttt
tttaatattttgaaaaagagtactacccttgccgaccgacgggggtgctc
cgctgaagttcgaaaaatggaccctacgtgggactcgacttttcaaaaat
gaggaatgtttttttatattttcagctTGTGAAGGAAGGAATTATCCAAG
ACGCTTTGTTTGGTCTACTACCAGAAACACAATCGTTAACGCTGCAAAGA
TTTTTCGGAAGTCTTGTGGAAATTATGAGTGAAAAGATTGACCTCAATGA
ATTGCCTAAGCTGAAACTAAGATTTTACGAAGCCATGGCCTATCTTGAAA
GAGATTTTCCACTGGCTTTAATGGTATTTTAGTACATTTGTAttgctttt
aaaattgtttgagATAAGGGTTTTAGACGGTTCAGTCTCTCGTCGTCGAT
TTTTAAGGATTCAAGAACTGACAGCGGCACGTACCCTCTCCCATCTTGTT
TACTTATTCGTTGGTGGTATCCCACGGTTTGAATGTATCCAAATCAAATG
TATCTATCCATACTCCAATGTGATCAAATTGAATTTCACAAGAATAAATC
TAGGATTTAGATTAGAGCTATGTTAAGAAGTACtgtggattaattttttt
tattttcattttcattctttttaataaaaggTGATATCTTTTCATCTGCT
GGTGCACATCGTCGAAGATTTACACAATGGACCCATTCACACAAAGTGGA
TGTATGCCTTTGAAAGGTATAACTCGTATATTACAAGACGTGTAATGAGC
AGATCGAATCCTGAGGCGTGTGTTATGAGAACCCACAGAGTAAGTTATAC
AGCCTATTTAACTCACAGACAATTATTCCCCTTAACAgttattcgatttt
tttctattcCCAACTGGTTAATTTGGGAGGAAGTAAAAGAAATACCCAAC
CAAAGTAGCTAACAAAGCATCTGTGATGAtttatttcatttgaattatGA
AAAATGCTTAATCTCAAATGTCGATAAAACGCTTTTATATTCATACCACT
TTACCAATAGGTATACGattggattttttatttcaaaaatatcggACAGT
TACAGACAATATACGAAGAAGACGAAGATATGACTGGCAAAGATTGa Coding sequence (CDS) from alignment at sc0000349_pilon:33062..38658+ >XLOC_035185 ID=XLOC_035185|Name=XLOC_035185|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3534bp|location=Sequence derived from alignment at sc0000349_pilon:33062..38658+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAAGTGATAGCGAGCA
GTCATGTTCAAAAGACGATACGGACGATACAGACACAGATGCAGATACAG
ATATAGATCTCTCTGAGCCTTTTTCagaagatgaagatgatgagCAAGCA
AAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAAGTGATAGCGAGCAGT
CATGTTCAAAAGACGATACGGACGATACAGACACAGATGCAGATACAGAT
ATAGATCTCTCTGAGCCTTTTTCagaagatgaagatgatgagCAAGAAAA
TATGGATATTGACGAAACTCTACTCAATTCACCTGATTTGAGGGATGATG
ATGAACTTTCTTCAGATGATTCGTTGCCATCTGAGATAAGTGACCAAAGC
TTGTCAGACGAAGATGTTCCAGTATCTGACGATCTCCATCATATATTCGA
GATGCTTAACCTCGACTGTGAATATGAGGATTGGTTAGAAGAAACTTACA
AAGATGGATTTCTCACGTATGACGAAAATATGGATATTGACGAAACTCTA
CTCAATTCACCTGATTTGAGGGATGATGATGAACTTTCTTCAGATGATTC
GTTGCCATCTGAGATAAGTGACCAAAGCTTGTCAGACGAAGATGTTCCAG
TATCTGACGATCTCCATCATATATTCGAGATGCTTAACCTCGACTGTGAA
TATGAGGATTGGTTAGAAGAAACTTACAAAGATGGATTTCTCACGTATGA
CGAGCCGTCATGTATCTTTTTACCTGTAGAAGATTCCGTGCTCAAACAAC
CAGTTTATCCGGGCGCTGATTTCACGCTGATGGACGTATTAGCAAATGAA
CTTATGTGGTTTGCATCTACCCCGTCGCTGAGTAAAAACGCACTTCAAAA
ACAGTTAAAGCTTAAAGCAAAAACCTATCCGAAGGGAAATACCTATCCTG
ATACACTCCACAAGGTCTTTGCCCTTGTCGGTCCTTACATGATACCACTA
AGGCGGATTGAACTTTGCGTAAATGACTGCGTTGCGTTCGAACGCCAATA
CATATCTTTAAAGTCGTGTCCTGCCTGTGGTCAAAGTCGGTATTCGTCCA
ATAATTCAGCAAGACGAGtttttttCTACATGTCAATGAAGGATCGCATT
AGAAGACTTTTTGCAAATTATGAAACTTCCAAACTTCTACAAAGTCACGC
AGAAGTAAAAGCCGTCATGTATCTTTTTACCTGTAGAAGATTCCGTGCTC
AAACAACCAGTTTATCCGGGCGCTGATTTCACGCTGATGGACGTATTAGC
AAATGAACTTATGTGGTTTGCATCTACCCCGTCGCTGAGTAAAAACGCAC
TTCAAAAACAGTTAAAGCTTAAAGCAAAAACCTATCCGAAGGGAAATACC
TATCCTGATACACTCCACAAGGTCTTTGCCCTTGTCGGTCCTTACATGAT
ACCACTAAGGCGGATTGAACTTTGCGTAAATGACTGCGTTGCGTTCGAAC
GCCAATACATATCTTTAAAGTCGTGTCCTGCCTGTGGTCAAAGTCGGTAT
TCGTCCAATAATTCAGCAAGACGAGtttttttCTACATGTCAATGAAGGA
TCGCATTAGAAGACTTTTTGCAAATTATGAAACTTCCAAACTTCTACAAA
GTCACGCAGAAGTAAAATTGCAAAATGTTATTCACGATGTTCACGAAACA
AAAAGATGGGTACCGAACACAGAAAACCCGAGAAAAGTCAACCTGATTTT
GAATACGGATGGTGTAAACCCGTACAGCATCAGATGCAATTATTCAATGT
GGCCAgttattttggctatcgaaaaCCTTCCGAGGGCTGTCCGGTTTGAT
CGTAGTAATCTCTTACTCGGTGGCATAATTCCTGCATGGAATGACGGGAA
AGAAACGCCGAATATCAATATATATTCACAGATATTGATCAATGATATTG
AGGACTGTCAAGATGCCTTAACCTACGATGCATACAGATTGCAAAATGTT
ATTCACGATGTTCACGAAACAAAAAGATGGGTACCGAACACAGAAAACCC
GAGAAAAGTCAACCTGATTTTGAATACGGATGGTGTAAACCCGTACAGCA
TCAGATGCAATTATTCAATGTGGCCAgttattttggctatcgaaaaCCTT
CCGAGGGCTGTCCGGTTTGATCGTAGTAATCTCTTACTCGGTGGCATAAT
TCCTGCATGGAATGACGGGAAAGAAACGCCGAATATCAATATATATTCAC
AGATATTGATCAATGATATTGAGGACTGTCAAGATGCCTTAACCTACGAT
GCATACAGAGGTGATTGGTTCCATTTAGAAGTATCGATAGTAAAATATGT
ACTCGATTACCCTGGCATCAACAAATTATTTCACTTATCTGGATCGGGCG
CTTATTCTGGTTGCACATGGTGCGAcatcagagAGGTGATTGGTTCCATT
TAGAAGTATCGATAGTAAAATATGTACTCGATTACCCTGGCATCAACAAA
TTATTTCACTTATCTGGATCGGGCGCTTATTCTGGTTGCACATGGTGCGA
catcagagGTTTATACCTGAAAAACTCGAGAAAGATGGTATACATTGGGT
ATCGGAATTACTTGCCAGCTGACCATCCATTAAGAAATGACGCAGGTTTA
TACCTGAAAAACTCGAGAAAGATGGTATACATTGGGTATCGGAATTACTT
GCCAGCTGACCATCCATTAAGAAATGACGCAGTATTCCGTTATAAATGCG
AAGAATGTCCGAAATGCTACTCTACAATGGACTACAAGAAATTCGAAGAC
GAGTACAATGAAGGAAATGATAAAGAGAGGGTAAAGCATACCAAAAGGAC
CGGATATCATGGGCCAACTCCATTTAATCAAATGCCATATTCCGTTATAA
ATGCGAAGAATGTCCGAAATGCTACTCTACAATGGACTACAAGAAATTCG
AAGACGAGTACAATGAAGGAAATGATAAAGAGAGGGTAAAGCATACCAAA
AGGACCGGATATCATGGGCCAACTCCATTTAATCAAATGCCAgTGATATC
TTTTCATCTGCTGGTGCACATCGTCGAAGATTTACACAATGGACCCATTC
ACACAAAGTGGATGTATGCCTTTGAAAGGTATAACTCGTATATTACAAGA
CGTGTAATGAGCAGATCGAATCCTGAGGCGTGTGTTATGAGAACCCACAG
AgTGATATCTTTTCATCTGCTGGTGCACATCGTCGAAGATTTACACAATG
GACCCATTCACACAAAGTGGATGTATGCCTTTGAAAGGTATAACTCGTAT
ATTACAAGACGTGTAATGAGCAGATCGAATCCTGAGGCGTGTGTTATGAG
AACCCACAGAGTATACGattggattttttatttcaaaaatatcggACAGT
TACAGACAATATACGAAGAAGACGAAGATATGACTGGCAAAGATTGaGTA
TACGattggattttttatttcaaaaatatcggACAGTTACAGACAATATA
CGAAGAAGACGAAGATATGACTGGCAAAGATTGa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349_pilon | genome | sc0000349_pilon:33062..38658 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1681-1767:5511 |
| Aaloc | 1522-1680:5131 |
| Aaloc | 1369-1521:2781 |
| Aaloc | 1282-1365:2456 |
| Aaloc | 1156-1278:2188 |
| Aaloc | 835-1152:1581 |
| Aaloc | 379-831:825 |
| Aaloc | 151-375:346 |
| Aaloc | 1-147:1 |
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