XLOC_034907 (mRNA) -

Overview
NameXLOC_034907
Unique NameXLOC_034907
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:155102..159079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034907 ID=XLOC_034907|Name=XLOC_034907|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3978bp|location=Sequence derived from alignment at sc0000100_pilon:155102..159079- (Clytia hemisphaerica_ch_hm2_pilon)
TTAGAATACAAAAAAATGAAGTATCACATTCATCTTGGTAATACTTTGCA
ATCAAAAGTTGCACATTTTGTGTCACTATATGTAGGTATACCAGAAGAGT
CTATTCATCTTGATTCAAAAGAAGATTTAGATTGTGAATATCCTGTATGT
GTTATGAGAGATGAAGGTCTTGTTGTATCAGGACTATGCCATGCAGCTCG
TCAATCAATAAAATTTGCTTGCTCAAACAGTACTGTTGAAGGTAGAAAGC
AGAAATTTGAATCACTGCTGGTATGTTCACTTTTTTTGCTAGCTATTGAG
TTTAGTAAAAAACTTTTCTACATCATCCACTTCCAGTTTTTTTTGAAAAT
CAATTGCTAACCGGTTGGAGTAGTTTCTTAGATGGGACCAAATTTTTTGC
AGGTATTTTTATCTAAACAAGTTGAGGAAGTATAAATTAATTCTAGAATT
TAGATGAATTCAAAATATCACAATGGAAATTGCAAAAAGGTTGCTCATTA
ATAAGAGGGAAAAGTCTGCGTCACAAGTTTTTTAGATCTTGAATTTTCAA
CTCTAGGTTTTATTTAAGAAATTTATGATATACTAGCAAACCGACCCATG
TTTTGCTGAAGGTCAAAAATTAAATTTGTCTTGCCTTATATTATATAAAT
ATTTTTTAAGCATTTTTCTTATTTAAAGAACAAAATGTTCCATCAATCTT
TAAATATTATTTTATGCAACTTTAAGGTCTAAAGAGCAATCGCTCTATTT
TCTTTTCTTTGTTAGGGCTACAAGCAAAATTGTTTAAAGGCAAATGCTGT
GGTAAGTATTTAGCGTAATTTTAGATATGTATATAGTATATATATTTGAT
TAAATTTGATGAATGTTTACCTTAAGAGAACTAATTTTCATGGGAACTTA
TTTTTACATCACTTATTTTCAAGGTGCGAGGGTACTAAATTTGGGCATTT
TGCAGAATTAATTTCTGCGGTTGACACCCACTTTTTACCAAAATTGTTTT
ATATTCCTAAGGGTTTTTTGGATTTTTAGTAAAATTTGCATTTGGTGGAA
CTAAGTAAGTAGTCACTCAAAAATGTAAAAATTAGTTCCCGCGAAAATAA
GTTTCCTTAAGGCAGCTTAAGGGACACTTTCTCTTTTTAACTAAAAACCT
CTTGTCTTTAATCATTTAAAATCAATAGAGACACAAACTTCTATTCAGTG
AGAGTAACTCTTCTGACAAACATGGTAGTTACAAAATATGATTTTTACTA
TTTATATTAGGTTAGCAACTGGACCAGATTTTGTGAAGTTACATTTCCAA
ATGCTATTATAAAATTTATAAAAGATTTGAAATCTCAACCTTCAACAGTA
ATAATTCCTGAAGAGCTGATTGCATTAGAAAAAGAATTTGCTATCCCGAA
GAAGACTCCAAATCCAATGAAGTATTTCAAAGGCAGAAAAAAAGATGCAC
TCAAAACTAAAGACTCCATAGATCTGAAAATCATTCCTTGTGATTCTATT
GAAACTGTTTGGTATCGATGCAAGTTTGGAACAGAACAGCCAATAAAGAT
ATCAAAAATGGACAGAATTATTGACTTTGAAAATATTAACTCTAAAAAGG
ATATCAATTGGCCATTTCTTTCTGGCCTGAATTTGACAGTACTAGATCTT
ATAGTGTTGGCTGGTTTTCTTGAGCTCTTTGCAGAGGTAAGTCAATTTCT
GAAAAATACTCGAAAAATTTGTTTGCATGCTTTGTCAAAAATTTGCAAGT
GTTTCAATAATGCTCAATTTCAAGAAGGAGCTTAACATTTTCAGAACGTT
TATTCAAAAGTATCTGAGGATTTCAAGTTTTTCTTGCCATAAAATGCTTT
ATCAAAAAGACTTCAGGCTACTTCCCTAAATGAGAGCATGAATATAAATC
AGCTTTAAGTTGATAGACATGGCTTCAAATTGATTTGTTAAACAATTCAC
CACCTAGAAATCCGTAACTAAAATGTGCTGAATTCAATGTTTTCAACCAT
AATTTTTAATTCTTTTCCAGGTTTGTTCTTTGAAGTTGATGAAAAAGCTG
CTTGAGAAGCTTCCCTGTATAGAAAAATGGATTCTAAATTGTTTTTCTTG
TGAAGAGCTGTTCCCTCCCATCATTCAAATTTGGTCTAACCATTTGGATC
AAAATGTTGGCAATACTGAAATCATTATGCCAACAAATGAAGAAGAGATC
AAACATGGTATTTGCCTTTTAATTTTTTTGAAAAAACAAATTCAAGTTCA
ACTAACACTTTGTCTATAAAACTATTCACTTGAATTTTCACTAAATGAGA
TGACAGATGACACAAATCTTTGTGGCCATTTTTTTGGGTTATTTCAGACC
TACTGGTATATACCATTTTTGTAACCTTTCATTTCAAATTTTCTTTTAGT
CTCTTTCACTGAAAAAAGTGGTAATCCAAAGCAAGTCCATGCCAAAATCA
CCAAGGCCCTACCGACAATCAAAAATATACTCGAGCAACATCGCTTGAAT
TCAATTGGATTTGGAGAAAATAATGAAAATAAAACAATATCTTGGGAAGA
TTTTCCAAATGAAGTAGACCCTAGTGGAGGTAATGCAAAGAAACTTTTAC
AAATTGGATTTTGGTTATTATGTAATTCTTTATATTTGTTTTATATTACA
AGCTATATAAATTAATGCCAGTTGGGATGTGCCATCAGCTACACATGCTG
TTGCAAAAAAGACTTTTGAGGGTTCAAAAGAAATAAATTGCTAATAGGAG
CTGCTACATGTTTATACTTTGATAATATCTTTTTAGGAGAGCTCAATCCA
GACAGAAGTAAAAGGAAACGTCAACAGATTGAAAATATGGTTTCAAGAAT
TTTGCCATTGTTGAGGACAGGAGATAAGATTGTTGAGTTTTGTGCAGGAG
GGGGACACCTAGGAATAGTTGTTGCTTATCTACGACCAGACTGCCAGGTA
AGTCACTACTGCACTTCGAAAAAACTTTTCATATTCACTTATTCAATTAA
TATTTTGATTAAAAGTGTTCAACCAATACACCTTTTCGACCGTAGCCGCC
AATTGCCGCGCGGGCATTTTTTACCACCCTAAAACCGTCCCAGTCTTTTT
CGCACCTAAAGACAATATAGAAAAAAGTTTAACAAAAGGATTAGATCGAG
TTTAGGGTGGTAAATTAAATAATAAAGTGATACGCGCCTGACTGCCGGAC
TACGATCGAAAAGGTGTATAGGATCTTTATTCCATTTCAGTGGAGACTGT
AAAGTGCAAGTATTCATGATAACTTTATTCTTCATCTTCAGGTCGTTTTA
CTTGACAACAAAGAAGAATCAATGAATCGTGCCTGCTCTCGTATCAAATC
ATTAGGGTTGAAGAATGTCACTTTCTATCTGACAAACCTGGAGTATTATA
ATGGGTCTTTTGACATCGGAACAACTTTGCATGCTTGTGGAACAGCCACT
GATTTGGTGCTCAAGAAATGTATCAATGATAGGTATGTATCACAACCATT
TTGTTCTATTTCTCATGTTGTAACTAGTTACGAAATTTGTATTTGATAGA
AAATGAATGAACATCATAATTTATATATTTCTGCATTTTATTGTATGTTA
CAAGATCTATGGCCATTTTTCAACACTTGTGGTCTTCAATTTCTAAATCA
AATTTTCCATAGGTCTTCATTCGTTATTGCACCTTGTTGTTATGGTGGCA
TTCGGTCAACAACAGACATTCTATATCCAAAGAGCACAAAATTCAAGTGT
TTGGAACCTGATTTCTATCATATTTTGGCACATTCAGCTGACCAAACAAA
CAATAACCCTTTGAGTGAATACAACATTCAAGGGAAAAACAGCATGATAT
TGGTTGATTTAGATAGAAAACTTCATGCAATGGAAAAGGGTAACTATAAC
GAAATAGATATTTTAACAATGGACCCTGTGACCTGTTCTCCAAAAAACAA
TATGATTGTTGGAACGATGAATAGGTAG

Coding sequence (CDS) from alignment at sc0000100_pilon:155102..159079-

>XLOC_034907 ID=XLOC_034907|Name=XLOC_034907|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3534bp|location=Sequence derived from alignment at sc0000100_pilon:155102..159079- (Clytia hemisphaerica_ch_hm2_pilon)
TTAGAATACAAAAAAATGAAGTATCACATTCATCTTGGTAATACTTTGCA
ATCAAAAGTTGCACATTTTGTGTCACTATATGTAGGTATACCAGAAGAGT
CTATTCATCTTGATTCAAAAGAAGATTTAGATTGTGAATATCCTGTATGT
GTTATGAGAGATGAAGGTCTTGTTGTATCAGGACTATGCCATGCAGCTCG
TCAATCAATAAAATTTGCTTGCTCAAACAGTACTGTTGAAGGTAGAAAGC
AGAAATTTGAATCACTGCTGTTAGAATACAAAAAAATGAAGTATCACATT
CATCTTGGTAATACTTTGCAATCAAAAGTTGCACATTTTGTGTCACTATA
TGTAGGTATACCAGAAGAGTCTATTCATCTTGATTCAAAAGAAGATTTAG
ATTGTGAATATCCTGTATGTGTTATGAGAGATGAAGGTCTTGTTGTATCA
GGACTATGCCATGCAGCTCGTCAATCAATAAAATTTGCTTGCTCAAACAG
TACTGTTGAAGGTAGAAAGCAGAAATTTGAATCACTGCTGGGCTACAAGC
AAAATTGTTTAAAGGCAAATGCTGTGGGCTACAAGCAAAATTGTTTAAAG
GCAAATGCTGTGGTTAGCAACTGGACCAGATTTTGTGAAGTTACATTTCC
AAATGCTATTATAAAATTTATAAAAGATTTGAAATCTCAACCTTCAACAG
TAATAATTCCTGAAGAGCTGATTGCATTAGAAAAAGAATTTGCTATCCCG
AAGAAGACTCCAAATCCAATGAAGTATTTCAAAGGCAGAAAAAAAGATGC
ACTCAAAACTAAAGACTCCATAGATCTGAAAATCATTCCTTGTGATTCTA
TTGAAACTGTTTGGTATCGATGCAAGTTTGGAACAGAACAGCCAATAAAG
ATATCAAAAATGGACAGAATTATTGACTTTGAAAATATTAACTCTAAAAA
GGATATCAATTGGCCATTTCTTTCTGGCCTGAATTTGACAGTACTAGATC
TTATAGTGTTGGCTGGTTTTCTTGAGCTCTTTGCAGAGGTTAGCAACTGG
ACCAGATTTTGTGAAGTTACATTTCCAAATGCTATTATAAAATTTATAAA
AGATTTGAAATCTCAACCTTCAACAGTAATAATTCCTGAAGAGCTGATTG
CATTAGAAAAAGAATTTGCTATCCCGAAGAAGACTCCAAATCCAATGAAG
TATTTCAAAGGCAGAAAAAAAGATGCACTCAAAACTAAAGACTCCATAGA
TCTGAAAATCATTCCTTGTGATTCTATTGAAACTGTTTGGTATCGATGCA
AGTTTGGAACAGAACAGCCAATAAAGATATCAAAAATGGACAGAATTATT
GACTTTGAAAATATTAACTCTAAAAAGGATATCAATTGGCCATTTCTTTC
TGGCCTGAATTTGACAGTACTAGATCTTATAGTGTTGGCTGGTTTTCTTG
AGCTCTTTGCAGAGGTTTGTTCTTTGAAGTTGATGAAAAAGCTGCTTGAG
AAGCTTCCCTGTATAGAAAAATGGATTCTAAATTGTTTTTCTTGTGAAGA
GCTGTTCCCTCCCATCATTCAAATTTGGTCTAACCATTTGGATCAAAATG
TTGGCAATACTGAAATCATTATGCCAACAAATGAAGAAGAGATCAAACAT
GGTTTGTTCTTTGAAGTTGATGAAAAAGCTGCTTGAGAAGCTTCCCTGTA
TAGAAAAATGGATTCTAAATTGTTTTTCTTGTGAAGAGCTGTTCCCTCCC
ATCATTCAAATTTGGTCTAACCATTTGGATCAAAATGTTGGCAATACTGA
AATCATTATGCCAACAAATGAAGAAGAGATCAAACATGTCTCTTTCACTG
AAAAAAGTGGTAATCCAAAGCAAGTCCATGCCAAAATCACCAAGGCCCTA
CCGACAATCAAAAATATACTCGAGCAACATCGCTTGAATTCAATTGGATT
TGGAGAAAATAATGAAAATAAAACAATATCTTGGGAAGATTTTCCAAATG
AAGTAGACCCTAGTGGAGTCTCTTTCACTGAAAAAAGTGGTAATCCAAAG
CAAGTCCATGCCAAAATCACCAAGGCCCTACCGACAATCAAAAATATACT
CGAGCAACATCGCTTGAATTCAATTGGATTTGGAGAAAATAATGAAAATA
AAACAATATCTTGGGAAGATTTTCCAAATGAAGTAGACCCTAGTGGAGGA
GAGCTCAATCCAGACAGAAGTAAAAGGAAACGTCAACAGATTGAAAATAT
GGTTTCAAGAATTTTGCCATTGTTGAGGACAGGAGATAAGATTGTTGAGT
TTTGTGCAGGAGGGGGACACCTAGGAATAGTTGTTGCTTATCTACGACCA
GACTGCCAGGAGAGCTCAATCCAGACAGAAGTAAAAGGAAACGTCAACAG
ATTGAAAATATGGTTTCAAGAATTTTGCCATTGTTGAGGACAGGAGATAA
GATTGTTGAGTTTTGTGCAGGAGGGGGACACCTAGGAATAGTTGTTGCTT
ATCTACGACCAGACTGCCAGGTCGTTTTACTTGACAACAAAGAAGAATCA
ATGAATCGTGCCTGCTCTCGTATCAAATCATTAGGGTTGAAGAATGTCAC
TTTCTATCTGACAAACCTGGAGTATTATAATGGGTCTTTTGACATCGGAA
CAACTTTGCATGCTTGTGGAACAGCCACTGATTTGGTGCTCAAGAAATGT
ATCAATGATAGGTCGTTTTACTTGACAACAAAGAAGAATCAATGAATCGT
GCCTGCTCTCGTATCAAATCATTAGGGTTGAAGAATGTCACTTTCTATCT
GACAAACCTGGAGTATTATAATGGGTCTTTTGACATCGGAACAACTTTGC
ATGCTTGTGGAACAGCCACTGATTTGGTGCTCAAGAAATGTATCAATGAT
AGGTCTTCATTCGTTATTGCACCTTGTTGTTATGGTGGCATTCGGTCAAC
AACAGACATTCTATATCCAAAGAGCACAAAATTCAAGTGTTTGGAACCTG
ATTTCTATCATATTTTGGCACATTCAGCTGACCAAACAAACAATAACCCT
TTGAGTGAATACAACATTCAAGGGAAAAACAGCATGATATTGGTTGATTT
AGATAGAAAACTTCATGCAATGGAAAAGGGTAACTATAACGAAATAGATA
TTTTAACAATGGACCCTGTGACCTGTTCTCCAAAAAACAATATGATTGTT
GGAACGATGAATAGGTAGGTCTTCATTCGTTATTGCACCTTGTTGTTATG
GTGGCATTCGGTCAACAACAGACATTCTATATCCAAAGAGCACAAAATTC
AAGTGTTTGGAACCTGATTTCTATCATATTTTGGCACATTCAGCTGACCA
AACAAACAATAACCCTTTGAGTGAATACAACATTCAAGGGAAAAACAGCA
TGATATTGGTTGATTTAGATAGAAAACTTCATGCAATGGAAAAGGGTAAC
TATAACGAAATAGATATTTTAACAATGGACCCTGTGACCTGTTCTCCAAA
AAACAATATGATTGTTGGAACGATGAATAGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_034907XLOC_034907-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:155102..159079 -
Properties
Property NameValue
Aaloc1453-1767:316
Aaloc1261-1449:688
Aaloc1102-1260:1191
Aaloc922-1098:1578
Aaloc733-918:1959
Aaloc307-732:2719
Aaloc271-306:3214
Aaloc1-270:3979