XLOC_034896 (mRNA) -

Overview


Name	XLOC_034896
Unique Name	XLOC_034896
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000299_pilon:64474..70222-
coding sequence from alignment at sc0000299_pilon:64474..70222-

mRNA from alignment at sc0000299_pilon:64474..70222-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_034896 ID=XLOC_034896|Name=XLOC_034896|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5749bp|location=Sequence derived from alignment at sc0000299_pilon:64474..70222- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCAGAAAAGGACAGATCATAAACGGACAGATCATAAAAGGGCAGA
TCATAAAAAAACTTGGGCAGAAATAGACAAAGCAGTTTATAAGAGTCGTG
TTGCACAATGTCAACTTGCTACCTTTGTTCCCTCAAATTTTACATTTTAT
AAGAGTCTTGTCATATTTTTGGGAGTTCCTCCTGGGGATTCCTCAAACGA
GAATACCTTGATTTACGTTGACATTGAAAACGGTGCATGGGAAAATATGG
ATGTTGATTGTAAACAGGGTAGCAGTAAAAAATCTAACGATGGACTGGAA
GCTCAATCATACACCACTTATCATTGGAACTTTTTACTTGATCCAGAAAC
AACACTTAGCTCATCAACCATGGGTTATTCTAAAGAGGAGGAGTTATTAC
GTGAACGTAAACGACTTGTTTCTCATGGTATCACGTCATATGATTTTGAT
CACAAAACAGGACGTTTATTGTTTCGATCTGGATCTGATATTTATACTGT
TGATGTTGCTCCCATAACCACTGGTGCAACAAAGGTAGGGCAACCCTTAT
CTCTTAAGGGATATCTAACTTTTTCAGAATCAGAAACTCCTAAATAAAAA
ATAGCTGGTTACAGCTTTCACGCTTAATTAAAGTTTGTACTATTTTAAAT
GAAATTTTCCTTAGAAATACAAGCCACATTTAAATAAATTTTCCTTATTT
TTAACATCTCTGGACAACTTTATGTAAACATAACGTGTCTTTTAAAATTT
CAGTTTGCAGCCCCACGACTTGTTTCACCTAATATGCTTAGCAGTAAGAT
GGATTCCAAAATCTGTCCAAGCAATACAAACATTATTTCGTTTATTGAGA
GTGGTGACATCTGGGTGTCTAACATCATCACAGGTCACGAGATGAGATTG
ACATTCGTGAGAAACGCTGGTCGTGATGACTCATATTCTGCCGGGGAGCC
TAGCTATGTGACACAAGAGGAATTTGACAGGTTTACTGGCTATTGGTGGG
AACCGTTCAAACAACAAGACATGGAAGGTTTGATAAGTCTTTGGATTATT
TTAATACAATACCAATGCATATAGTATGATGAGGTATAATGCTCTAATAA
AAAAGCCTCTGAATTGAGGAAATCTCGTTAACTTTATATCATTCAATATT
ATGATTCTCTATTTGAAAGAAATTACATTATAAATTCTCTATGTTTTTCC
ATAAAATATGTATTCTTTTTTAGTACATTTTTTTTGAAATATAAACAATA
TGAACTTTTTCTTTCAGGCTGTCTCGAAGTGCACAAAATCTTATACGAAC
TTGTAAGTTAATTTCTATCAATTTTGATGCTATCAATAAATATCACTTTT
ATCATTTGCCACCAAGCAAAATAAAATGATCTTGTAATTTGTTGTCATGA
ATCTTTGCAATTCTAATTCGATTTTTAACTGTATGCTTCAGGTTGACCAA
CATGCTGTAGAAGAACTCCACATTCCTGCAACGCCAGACAACAATTTCAG
TTCATTCGTTGAAACATACAGATATCCAAAAGCAGGATCCATGAACGCAA
AATCAACTCTTCGGCTAGTTCAATTCTGTATCAAAAGCTCAACAAACGAG
GTGAATTATAAAGAACTTTTCAAATTGTAAATTGCGTGAGCTTAGAATTA
CTAAGACTGATTTCTCATTAGGTTAAGTTCTTCAAATCTATTTACTTTAT
TGGTAGAAAATTTGTAGGTGAAATAATTCGTTAGCAAAATTTGTTCATTG
TAAAAATTTTTGTCACTCACTCACCGTCACTTTTTACCAATGAATAATTT
TCTGCGCACAAATCTTTTACCATAGTAACGTTGGCTTCTTAGTTAAGAAT
TAAGACCAAATTGAAAGAAATTAACTGAGCAATATCCTCTTTAAAAATAG
TAGCTTTTTTAGTAAAATTCCTTTTTCAACTTTTAAGATCTGTTTTTATT
TTCTTCAGTTTTTGGACGGTTCAATAGTGGAATATGAACTGAGGAACGAT
TTGCAAGAACTTTTCCCATGGGCTGAATATATTGTTCGATGTGGCTGGAT
GCCTGATGGAAAACAGTAAGAATACCGTTTGATGTCATTGCACCTAAGAA
AATCTGTAAGTGGGATCATTGATGTCTTGGATTTTTTTCTTTTCTAGATA
TGTTGTGGGGGTTCATGGGTGGAACAAAATTCCAAAATTTGAGCCTCAGA
GCTCAAGCCGTTCCGCATTTTGAAGTTTCAAAAATTTTGTCTAAAATACA
GACCGGTAATTTACAGACCAGAATTCTAAATTGCTATAACTCCTTATTGC
TAAGTACAAATGACATGAAATTTTGCACAGATACACAAGACCATAAACAT
TTTCTAAAAACAAAAACAAAACAAAAAATTTTATTTCAAGATGGCGGATA
TTTGAAGCCGAAGTTTTGAACTGCTTGAAAATACCGGTTGGATTTGATTC
TCAGTTACTCCCGGCCCGAGATTCAAATTGAATTTCTTTTTCAGATCCTG
AAAGATCAATCCTTTAACTACCAAATATCAAAAATCTGTCGTGGAGAATT
CATTTTTGGCTCAATAAATCAATTTTAAAGATGACCTATATTTTCCGAAA
ATTCCCTAGCAACGCCCTAGCAACAAGGCTTTAACAGGCTACTCCATGTA
CTGGTTGGCTCAAAAATTGGTTTTAATGATTGACAGTCCATTTCTCGACA
GTCGTGATCATAGACTGATCAAATCATTAGAGGATATTCCTCTATATGCA
AAAGATTATTCATAATTTTCACTGCCTGCGATGATATTAAGAGACATTTT
TTTAAGAGTCTTCAGGGTGTGATACCTCATCCTCTTGGATTTTGATGAAA
TTTTGACCAAATGATCTATCACACAAGAAAACAAGACGCTGAAAATTTCA
CCTTGATATCTCACGTAGTTTTGAAGATACAGCGTCTCAAAGAAAGGCTA
CTAAGCGAAAATTGACCCCTAAATTTCATGAACTCTGGTGACTCCTCAAA
ATTTCTAAGTCCAAGTGTCGTTAATTAGCTTTAGACTGTCCAATATTTCT
TGTCCAGAAGATTTAAACATCATTGTTTGCAGTATCTCATAAAATATCAC
CCTAGTAATGTTGCTTAGTTATTTAAGAATCAACAAGTAAGGCTGTTAGT
GTACACTTAAATATAGAGATATTGGATAGTCTAAAAGTTAATCACAACAC
TTGGACTTAGAAATTTTGCGGTAAAGCGCAAATTATTGTCAAAGTAGGAT
TTCTGAAAGATTCTAAAAAGTTTTTGAATAGGAATTAAGTACTGTTAAAC
CCATTTAGTTGAAGTAACCTGCTTATATTTAAGAGTAATATTCACCAAAC
TGTGAAAGATTGAGGCTTTTCCTGAAAATATAGGCCCTGGAATGGTAGGA
AAGGCCAGATGTCAATCTCACATTTTTTTACATATTCTGTACTTAAAAAT
AAAGAAAGAGTCATAAAATGTCATCTGTTGATGGAAATGACCTGAAATCT
TTTACAGTTGTTCCCTTAATACCAATGATTAGTTGGCTAGAGAAGATCAA
CCAATATTTTGACAAAAATTAACCTTTAAAGCCCTTAAGTGGGCCTGATT
TAGCATTTTAAGAGGGAAAAACAACGAAGCTAAGCAAATTTTCAATCGAT
CATATCTTCAAGAGACTTCAAAAACCCACTGAGATTTTTTGAGGCTATAA
ACTAGACCTACTAAGGAAGCCTTGCTGAAAGTTTCAAAAAAATTTGTTGT
TGCCGCAAAAAGATATGCCATCTTGAATTTTGCTCCAGATCTGCCAAAAT
AGCAATTTTTTTGGCCATTTTTGACAGTTACGCAAATATGGAAATCCTGA
AAATGTTGTTTTTGTGGCCAAAACCCACCAGTAAACCACTCCAGGTCAAA
AGTTTGCTTTAAAAAAGTCTCAAGGACTATCAGCAGCCAGCTAAAAGTGC
TTCGAAACCCAGATTACGCAGTCTGAAGCCCTCTGTATCCACTGTATATA
AATCAGCTTTCTAATGTACTTGAATAAAAATTCATTGGCTTTCAAAATCT
GCTCCTCACCAGAGTTCATGAAATTTAGGGGTCAATTTTCGCTTAGTGCC
CTATCTTTGAGACGCTGTATCTTCAAAACTAAGTGAGATATATTCTCTTT
CAGGATCTGAAAAAGAAATTCAATTTGGAATCTCGGGCCGGGAATAACTG
AGAATCAAATCCAACCGGTATTTTCAAGCAGTTCAAAACTTCGGCTTCAA
ATATCCGCCATTTTGGAGAAAAAAATTTAATTTTTGTTTTTGTTTTTAGA
AAATGTTTATGGTCTTGTGTATCTGTGCAAAATTTCATGTCATTTAGACT
TACCAATAAAGAGTTATAGCAATTTGGAATTCTGGTCTGTAAATTACCGG
TCTGTATTTTAGACAAAATTTTTGAAACTTCAAAATGCGATATCTCGGGA
ACGACTTGAGCTCTGAGGCTCAAATTTTGGAATTTTGTTCCACCCATGAA
CCCCCACAACATATCTAAAAAAGAAAAAAATCCAAGACATCAATGATCCC
ACTTTAGATGATTCAGGGATTTTCTTAGGTGCAATTGCTCTTAAAGCATT
GTTCTTTACAATAGAAATTTGGACTTAAAATAAATTGAATAAATTTATGA
ATTTGCACTGTGAGATATAACTATTGTTTTTTATGTTTTTGGCAGAATCA
GTCAAGAGGTTGAGATGATGGTTTAAAAATATCTAAAATTTCACCAAGGA
AAAAAAAAAAGAAAAAAAAAAGATAACTACAAAAAAAGGCAAACAGATTG
TGAGGTTTGATCCAAGACAATCAAATAATTCAATTTTACTTACCTCGTTT
TCTTAAAACCTAACAGCATTTGGGTCAAAGTGTTGAATCGAGCACAGAAT
CACATGGCACTACTTCGGATACCATGTTCAGCTTTTCGTCCAATCACCAT
GAACAATATTGGTCCCTCAGATGTTGTGCGTCAACATAAGATTGATGTTC
TCCTAGAAGAACATTCTGACTATTGGATCAATGTGAGAACTTTTCTGTTG
TAACGGGTTTTATCATCCTGATTTGTTTTTTTTTCTTCAAGTGATATATA
CAGAGTTTCCATTTAACTTAAAACACAAAACAAAATTTTTGTTGGGTGAG
GAGTAAAAAACCGACTAGCACAACATTAATCTAAAGACCAGTATTCCTTG
AGGCAAGATGAAAATTGATTTTTGTTAGAGGATTAGGCAGACACTATTAA
GAGTTATTTATTGAGCAGGCTCTGGATGAATGTTACACCTGTCACTTAGG
CTACATAAAGCTTTAACGATTGTGCTCTTTTTTATACCATTTGGAGACCA
ATTTAAGGGGGAAAAGCCCCATTATAAAGATATATGGTTACACACAAAAG
ACGCTAAAGGGAAGAGACTTTAAAATCTTGTTTTTCGTTTTGACAGGTGA
CAGATATCTTATGGTTCTTACCAACACTTCGAGAAGAAAGGCTCTCCATC
ATCTTCATCTCTGAAGAATCACGCTTCAAACATTTGAATTTCGTTACCGT
GACAACGGACTCGGATGACGGTTATTTTGGTATTAGCAATGAACATCAAC
CACTTAAAGAGTGTGTTATACGCCACTGTCAACTGGTGGAAAAGAAAGAA
CTGACTTCAGGTCAATGGGAAATCAAGGATGAGAAGGTAGACATTGACAA
CCATTTTTCAATACTTTATATTGATAAAGAATCAAAGAATGCGATGTGA

Coding sequence (CDS) from alignment at sc0000299_pilon:64474..70222-

>XLOC_034896 ID=XLOC_034896|Name=XLOC_034896|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3156bp|location=Sequence derived from alignment at sc0000299_pilon:64474..70222- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCAGAAAAGGACAGATCATAAACGGACAGATCATAAAAGGGCAGA
TCATAAAAAAACTTGGGCAGAAATAGACAAAGCAGTTTATAAGAGTCGTG
TTGCACAATGTCAACTTGCTACCTTTGTTCCCTCAAATTTTACATTTTAT
AAGAGTCTTGTCATATTTTTGGGAGTTCCTCCTGGGGATTCCTCAAACGA
GAATACCTTGATTTACGTTGACATTGAAAACGGTGCATGGGAAAATATGG
ATGTTGATTGTAAACAGGGTAGCAGTAAAAAATCTAACGATGGACTGGAA
GCTCAATCATACACCACTTATCATTGGAACTTTTTACTTGATCCAGAAAC
AACACTTAGCTCATCAACCATGGGTTATTCTAAAGAGGAGGAGTTATTAC
GTGAACGTAAACGACTTGTTTCTCATGGTATCACGTCATATGATTTTGAT
CACAAAACAGGACGTTTATTGTTTCGATCTGGATCTGATATTTATACTGT
TGATGTTGCTCCCATAACCACTGGTGCAACAAAGATGGATCAGAAAAGGA
CAGATCATAAACGGACAGATCATAAAAGGGCAGATCATAAAAAAACTTGG
GCAGAAATAGACAAAGCAGTTTATAAGAGTCGTGTTGCACAATGTCAACT
TGCTACCTTTGTTCCCTCAAATTTTACATTTTATAAGAGTCTTGTCATAT
TTTTGGGAGTTCCTCCTGGGGATTCCTCAAACGAGAATACCTTGATTTAC
GTTGACATTGAAAACGGTGCATGGGAAAATATGGATGTTGATTGTAAACA
GGGTAGCAGTAAAAAATCTAACGATGGACTGGAAGCTCAATCATACACCA
CTTATCATTGGAACTTTTTACTTGATCCAGAAACAACACTTAGCTCATCA
ACCATGGGTTATTCTAAAGAGGAGGAGTTATTACGTGAACGTAAACGACT
TGTTTCTCATGGTATCACGTCATATGATTTTGATCACAAAACAGGACGTT
TATTGTTTCGATCTGGATCTGATATTTATACTGTTGATGTTGCTCCCATA
ACCACTGGTGCAACAAAGTTTGCAGCCCCACGACTTGTTTCACCTAATAT
GCTTAGCAGTAAGATGGATTCCAAAATCTGTCCAAGCAATACAAACATTA
TTTCGTTTATTGAGAGTGGTGACATCTGGGTGTCTAACATCATCACAGGT
CACGAGATGAGATTGACATTCGTGAGAAACGCTGGTCGTGATGACTCATA
TTCTGCCGGGGAGCCTAGCTATGTGACACAAGAGGAATTTGACAGGTTTA
CTGGCTATTGGTGGGAACCGTTCAAACAACAAGACATGGAAGTTTGCAGC
CCCACGACTTGTTTCACCTAATATGCTTAGCAGTAAGATGGATTCCAAAA
TCTGTCCAAGCAATACAAACATTATTTCGTTTATTGAGAGTGGTGACATC
TGGGTGTCTAACATCATCACAGGTCACGAGATGAGATTGACATTCGTGAG
AAACGCTGGTCGTGATGACTCATATTCTGCCGGGGAGCCTAGCTATGTGA
CACAAGAGGAATTTGACAGGTTTACTGGCTATTGGTGGGAACCGTTCAAA
CAACAAGACATGGAAGGCTGTCTCGAAGTGCACAAAATCTTATACGAACT
TGCTGTCTCGAAGTGCACAAAATCTTATACGAACTTGTTGACCAACATGC
TGTAGAAGAACTCCACATTCCTGCAACGCCAGACAACAATTTCAGTTCAT
TCGTTGAAACATACAGATATCCAAAAGCAGGATCCATGAACGCAAAATCA
ACTCTTCGGCTAGTTCAATTCTGTATCAAAAGCTCAACAAACGAGGTTGA
CCAACATGCTGTAGAAGAACTCCACATTCCTGCAACGCCAGACAACAATT
TCAGTTCATTCGTTGAAACATACAGATATCCAAAAGCAGGATCCATGAAC
GCAAAATCAACTCTTCGGCTAGTTCAATTCTGTATCAAAAGCTCAACAAA
CGAGTTTTTGGACGGTTCAATAGTGGAATATGAACTGAGGAACGATTTGC
AAGAACTTTTCCCATGGGCTGAATATATTGTTCGATGTGGCTGGATGCCT
GATGGAAAACATTTTTGGACGGTTCAATAGTGGAATATGAACTGAGGAAC
GATTTGCAAGAACTTTTCCCATGGGCTGAATATATTGTTCGATGTGGCTG
GATGCCTGATGGAAAACACATTTGGGTCAAAGTGTTGAATCGAGCACAGA
ATCACATGGCACTACTTCGGATACCATGTTCAGCTTTTCGTCCAATCACC
ATGAACAATATTGGTCCCTCAGATGTTGTGCGTCAACATAAGATTGATGT
TCTCCTAGAAGAACATTCTGACTATTGGATCAATCATTTGGGTCAAAGTG
TTGAATCGAGCACAGAATCACATGGCACTACTTCGGATACCATGTTCAGC
TTTTCGTCCAATCACCATGAACAATATTGGTCCCTCAGATGTTGTGCGTC
AACATAAGATTGATGTTCTCCTAGAAGAACATTCTGACTATTGGATCAAT
GTGACAGATATCTTATGGTTCTTACCAACACTTCGAGAAGAAAGGCTCTC
CATCATCTTCATCTCTGAAGAATCACGCTTCAAACATTTGAATTTCGTTA
CCGTGACAACGGACTCGGATGACGGTTATTTTGGTATTAGCAATGAACAT
CAACCACTTAAAGAGTGTGTTATACGCCACTGTCAACTGGTGGAAAAGAA
AGAACTGACTTCAGGTCAATGGGAAATCAAGGATGAGAAGGTAGACATTG
ACAACCATTTTTCAATACTTTATATTGATAAAGAATCAAAGAATGCGATG
TGAGTGACAGATATCTTATGGTTCTTACCAACACTTCGAGAAGAAAGGCT
CTCCATCATCTTCATCTCTGAAGAATCACGCTTCAAACATTTGAATTTCG
TTACCGTGACAACGGACTCGGATGACGGTTATTTTGGTATTAGCAATGAA
CATCAACCACTTAAAGAGTGTGTTATACGCCACTGTCAACTGGTGGAAAA
GAAAGAACTGACTTCAGGTCAATGGGAAATCAAGGATGAGAAGGTAGACA
TTGACAACCATTTTTCAATACTTTATATTGATAAAGAATCAAAGAATGCG
ATGTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_034896	XLOC_034896-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000299_pilon	genome	sc0000299_pilon:64474..70222 -

Properties


Property Name	Value
Aaloc	1276-1578:304
Aaloc	1111-1275:883
Aaloc	1003-1107:3792
Aaloc	844-1002:4309
Aaloc	811-843:4481
Aaloc	535-807:4997
Aaloc	1-534:5750

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XLOC_034896 (mRNA) -