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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000477_pilon:48677..54597+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_034843 ID=XLOC_034843|Name=XLOC_034843|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5921bp|location=Sequence derived from alignment at sc0000477_pilon:48677..54597+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATACTAATACCAGAAGAAACTTGACTGCATTGGCCAATTCGGCCAA
CGAACTTTTAAGGTCGTTGGCCCCACCACCAGTAGATTCACAAACCAGCA
TAGCAACAAGCACGAGACCGTCAATACCATCAACAAGTTCAGCCAGATCT
GGTTCAGCATCAGCAGCACGTGAAGTGCAAAGCCTCTTCCCTACCCTAGT
GAATACCGCagaaagagcaaacaaagccaaaggtaaaaagaagaaaatta
gcaaaaaggaaaaaatcataacaacccACAAAGATGTGGTATTATTGCCA
CATGGTTGTGAAGCTGTCCCTACACATCAAGCCAGAATCAATCTGGAAAA
TCAAGCCATGGTTGTACACCGTTATCCTGTTGAAAGGCAATGGGATGAGC
AGCAAATGAAAGTGGCAATTCTTGCGCTTTTCAAAGACAAGAACTTGACA
TCTTTCCAATACGTCAAGGCTTGTTACAGTCGAATTATTGTTCCAAACTT
AGCAATGGGTGAAGTTTATGATGCCAGATGTGTTCTTGATCTAAGTGGAC
AGGGTGCTCTATATGTCCGTgcattggaaaaaaatccacttCTGTCAATG
AATGAAGAAGAGACTTCgcaaagtgaagaagaagatggtaattatatatc
tttttttaattttattcaaatgaCCATCGAAAAATTGTTCTGTTCACATC
ATCTCAAACAGGTGTTAAGGACAGCAGTCTGTAAAAACTCGACTTCGACC
CGGACCCAAGAAAAAGCAGACCCTCGACATGTAAAAAGCCGACCCTCTTC
TGggtaaaaaacattgaaaaaatctgaaaatcttctCTGTTCGGTTTCTG
GAACCTGAAGATGGCCCTTGGTAAGCCCATTTGACTAAGTGTCACCTCAG
GGCAGGGGGAGAATACATAACTTGgaccccccaatatggaccccaatTAT
GGATCCCTTCAAAAATGGGGGGAAATGTAAAAACCAGCTCTCACAGACCC
TGGTTCATGTCAAAATATCCAGACGTAGGtacatagtgtgcacccccccc
ccactctgcagggggggggggtttggggTTTTTGGGCCTAAAACAATCAG
GTGTGGGACATCgaaattttggactttcagGTGGGGGAAATAGGTTAAGC
TGGGACTAGAAAACTTTAGGCGGGACTTtcagagatttttcaaagaaaga
atTATTTCATATTCCTAAACTTTTCTGTttccatttttggacctacctcg
gaggtcctataaattaaccggtgtccgtctgttcgttcgtccgttcgtcc
gtccgtctgttaccagcttttctcaggattggctcattagttttttctaa
tttttggcacaatgatgcaaaatggcaatgcccaaaatgtgacggagccc
gattttcgaaaaaaaaatatgccggaaaaaccggtttttttggattttct
cgagatttcatcattaaaaaactgttttttgaagccggaactttctaaaa
atcgccggaacagccgattttcgccggaaaaacggtatttcttgaatttc
tcgagctgtactttatattttttcatgaaattttgcacactgatgcaaaa
tggcaatacctaaaatgtgacggaacccgattttcgaaaagcatattttt
ccggacgaaaatgccggaaaaaccggatttttggccttttttctCAATTC
CTAATACCTTCTAAAATTCGCTGAAGCAGCCGATTATGCCCGgaaaaatg
agttttcttgaatttctcgagttgagCGCAATATTTATTCATGAAGTTTT
GCTCGTTGGTTCGTTCATTGGtttattctttttcttaacacttttaatga
acaattttacttttcactttttatctaactgtttaTGACTTGAAATGTTC
ATGCCTAcatctattcaagctgctcactgCATTTTCTTACTCTCTggcac
tttttctatttttatctgacTCTCAtcgtcaggtaggtccattcagcatg
tggCTTGTTTCTTCCAAAATCATCAAGGTGCCTTTCaatatatcaaaaat
tttcgccaggtaggtccattcagcatgtggCTTGTTTCTTCCAAAATCAT
CAAGGTGCCTTTCaatatatcaaaaattttcgcctgcggcgctatcTTTT
TATTCCCTTCCTATGAAGTGCATCTAAAGACTTGAAATTGCAAACCAATT
GCTAGCTATTTTATTAATAATACTCTTTCTCCTCTGAAAAAGGCATGTGC
ATAGAATGGTTATTTAGTAGGGGTTGATCCCAGGTCTATCCTTTAGGGGG
TTGTCCCTGAGTTTATCTTTTACTTTGATTATTCAAACTCCTGGACAGAA
AGCAATGCAAATAATGTATTTTGTGTGTGGATAATTAATTAGTTGTTGCA
TTGTTTGGTTTATTGTGATTAAAAGCatctattttttaatatttcaaaaa
gaaatcaaactgagaaagatgcaaaagacgtgtgtccaaatttcatattt
tcattaaaaaatcaatcCTTAATACTTATTTTAGGTGGGACTCGGAAAGT
CAACTTTCAGGTGGGAATTTCTTGAGTGGTGGGACCTGAAATTTTAGGTA
GGACCTTGAACCCCCCTGCACACTATGGGTAATCGAAGAATTCGATTACC
GAAGTCATCGAATTTAATTGAAGCAATTAGTTTTCGattaatcaaactaa
tcgaaggCTAATCGATCTAATtgagattttaaaaaaattggaaaattcga
ttagttcgattagatTCGGTAAGCTTAACAATTACCttcgataatttttt
ttattctggacgtgaaaatttctgacattaaagGGACAACCAGATAAATA
TTTAAATCCAGCCTAAATATTCCTTCCATGGTCCATagcaaaacctccaa
attttacgggctacttatttttcaaagctgagatatttagatttgcaatt
ttcaatttctgcTCGAAAACAATAGTATTTCAACGTGAGGTACGTGTGAG
GTACGAAAATCTGAGATTTCAAATCGTCATATCTTAACTTTGGAATGTTT
gtcagcaaaaatattttgaggtctTAATAAGGACCATGGAAGGAATCTTT
TAgccaagtttcattttttatctggttatccctttaaagtatattttaaa
atgatacatggaaaaactatcctgaaaaataaataaaatatatataaaaa
aaacaaggagGATAATATTCTGGGAAGCTTAGTATTTTGGAGACTAGATT
TTTGAATCAGTATTGTTATATGCTTGAAGAAGAATACTAGGAAAGGGCAA
AggtaagttttaaaaatattagacTATGAGGTACCTTAGATCTGTGTGTC
AAAAACTAAACTTAATCAATAATATAAGTAATTTTCTGGATCACGACCTC
TTGAAGTTGAATTGAACGCAAAGTTAATCTTGGGTAAGACTTTCTGACTT
GACTAGTGCCTCCTTAAACGATTCTATTGATGTTTTCTCTCTGACAGATG
AAGGTAGGAGATTCCAAGAGTTTGAAGCTCTGTAGGCGAACAAATGATTG
TATCCAACATAGTTAAATGCTGGTTGATTGATTTTACAGTCATTTCTTGT
GCTTTTGGTTTTATTCAACTCTTTTACAAGATTTATCAGCAGTGGTGATA
TAAGattattgtaatttttgtatgttttgcAAGTCAAGTGtttttgtaat
aaaaagaaagaggTTTCCACTTTGCTTGAGCAAGCACATTATCTTTGACT
CTCTCctttcagggggggggtcggtagttaaatctcagacataacaatgt
ttactaccgtggtggtgtgacgaaaaatggaaaaaaaattttactaccca
gggtagtaaaatatcaaaataggtGGTAACCATgtgcaaatttttgaaaa
acttttactacctgggtagtaaaatcaggtaaaatttacaaattttagct
attttttgtaactttttccatttttgggataacttttctgaaaaaatctg
aaaatttttataattggaaaaaattttctgttggaaagttgtttgctgca
aacaaaaaactctcaaaattttttgtcaatactaaaaagactttaattcc
aAGGGCAAAACATCAATTTTCGCACAAAGTGAAATAAGtgtcacaaaaaa
aaatcagtccgaaaagcaaccaaaaaataagtGGATCTATGTCAAATTGT
CCCAAAAgattttactaccagggtagtaaagtacctcttccaagaatctg
ggtggtggtatgtaaaaattcgtaaaaatccttttactactcctatatgt
ctgagattttactaccgacccccctgcTCCTTTATACGTTCTATGATCAT
GCAAAATCGGCACAGACAGGCAGAATTTTCGAGATCCAAACCTACAAGat
gttaaaaagttttcccaaccTTCAGAGCTTTGGTACACGAAAGAAATTTC
TACATTGAATGCCAAAATGAAAGAATGTCAGGAAAAAGCTTTTTGCCCGT
TGTGAAACTGGTTACGCCAGCGTACTATTGACTTTCTGTGGGAGTCCATC
AGTAGTAATGTAAATAGACCCTGGGGAAACATGGACACAAGGTTGGTGTA
AATAGTTACCGCCAAAATTATCTCCCTTAATTAACATTTTCTTAAGGTAT
ATttcggaagggggtcactaccccctccccccttagtctagagcaacccc
tcctaccctaggttcaacccccctttcaaaatttgatgttaCCCCCCTCA
AAACTCTTTCAATGGGACATTTTCCCACTTTCAAGGCATTCACTACCCAT
ATTAAGTGAAATGATTAGAAATAAGCTCTTGATAGTggtcattttcagga
ttttaatGCAGTCAAGACTGCAAAACTATACCTCCCCCTTTCTACAAGAA
ATTCTCTTATCCCCacttttttgccaattttcaggACATCGCTACCCCCA
CCTTTATAAAGTGGGGGTTGCGAACTATGTAAGGGAGATGCACCTATTTT
CAAAGGCAATGAAAATGCAggtaaagtttgttttttgatgaaaaccTAAA
TTTTTGAGACTGGAGACAATCAAATATAGTCGAATAAAATATAGGGTAAG
TAATCAAATCAATCAAGAATAAATGTAAAGATTTAATTACCAAATTTTAA
TCTTTCAATTGACAtcgccttttttataagaaaagcgtactttggctgag
ggtcaAGTATCCTTaccttaagaaattgccaaaattaagaatgaaatatt
cttaatgtATTCTTACATTTTCAGACTTTAGCggtcactcacaaatcgat
tttaggttagaaaaacatttagttagtgggtgggtgggttaagGTCAGTT
GACGTTTCTTGGAAAcatcaacttttcaaaacctttctaactcaaatttc
tcaaaagtttCTTCCAACACCATCTACCGTTTTCACTTTAACCCTTTGTG
CGcgctgtttttttgaaaaagttgaaatttttccaaaatttttttttgaa
gctcaaaactttaaagtgccattaaagcttgtagcttttgatttaggAGA
TGGTTTttataccattggaaagctatttatatactctttctaaaagcatt
cggtttatgcccctttaaatcaagtggtcaggagctataGCCTCAAGTCT
GAGACTCAGTATTTTAATCCACATCTGGAAATCAACAATCCCTAGGCTAG
GGTAttgatgattttttcctgtgctaTATACTTTCTTCCTGACCAGTCCA
AACCCCCAACACTTTCGTTTTGATCtgagttttaaagatttaattaaatt
ttcctttttctatacCATATCAGTTACAAAAGCTGAGGATGTTCAAAATA
CACCAGCAATTGTCGTCCCAACACCACCACCTTCATTTGATGATGACAGT
GATTTTTTCGATGACACCATG Coding sequence (CDS) from alignment at sc0000477_pilon:48677..54597+ >XLOC_034843 ID=XLOC_034843|Name=XLOC_034843|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000477_pilon:48677..54597+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATACTAATACCAGAAGAAACTTGACTGCATTGGCCAATTCGGCCAA
CGAACTTTTAAGGTCGTTGGCCCCACCACCAGTAGATTCACAAACCAGCA
TAGCAACAAGCACGAGACCGTCAATACCATCAACAAGTTCAGCCAGATCT
GGTTCAGCATCAGCAGCACGTGAAGTGCAAAGCCTCTTCCCTACCCTAGT
GAATACCGCagaaagagcaaacaaagccaaaggtaaaaagaagaaaatta
gcaaaaaggaaaaaatcataacaacccACAAAGATGTGGTATTATTGCCA
CATGGTTGTGAAGCTGTCCCTACACATCAAGCCAGAATCAATCTGGAAAA
TCAAGCCATGGTTGTACACCGTTATCCTGTTGAAAGGCAATGGGATGAGC
AGCAAATGAAAGTGGCAATTCTTGCGCTTTTCAAAGACAAGAACTTGACA
TCTTTCCAATACGTCAAGGCTTGTTACAGTCGAATTATTGTTCCAAACTT
AGCAATGGGTGAAGTTTATGATGCCAGATGTGTTCTTGATCTAAGTGGAC
AGGGTGCTCTATATGTCCGTgcattggaaaaaaatccacttCTGTCAATG
AATGAAGAAGAGACTTCgcaaagtgaagaagaagatgATGAATACTAATA
CCAGAAGAAACTTGACTGCATTGGCCAATTCGGCCAACGAACTTTTAAGG
TCGTTGGCCCCACCACCAGTAGATTCACAAACCAGCATAGCAACAAGCAC
GAGACCGTCAATACCATCAACAAGTTCAGCCAGATCTGGTTCAGCATCAG
CAGCACGTGAAGTGCAAAGCCTCTTCCCTACCCTAGTGAATACCGCagaa
agagcaaacaaagccaaaggtaaaaagaagaaaattagcaaaaaggaaaa
aatcataacaacccACAAAGATGTGGTATTATTGCCACATGGTTGTGAAG
CTGTCCCTACACATCAAGCCAGAATCAATCTGGAAAATCAAGCCATGGTT
GTACACCGTTATCCTGTTGAAAGGCAATGGGATGAGCAGCAAATGAAAGT
GGCAATTCTTGCGCTTTTCAAAGACAAGAACTTGACATCTTTCCAATACG
TCAAGGCTTGTTACAGTCGAATTATTGTTCCAAACTTAGCAATGGGTGAA
GTTTATGATGCCAGATGTGTTCTTGATCTAAGTGGACAGGGTGCTCTATA
TGTCCGTgcattggaaaaaaatccacttCTGTCAATGAATGAAGAAGAGA
CTTCgcaaagtgaagaagaagatgTTACAAAAGCTGAGGATGTTCAAAAT
ACACCAGCAATTGTCGTCCCAACACCACCACCTTCATTTGATGATGACAG
TGATTTTTTCGATGACACCATGTTACAAAAGCTGAGGATGTTCAAAATAC
ACCAGCAATTGTCGTCCCAACACCACCACCTTCATTTGATGATGACAGTG
ATTTTTTCGATGACACCATG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000477_pilon | genome | sc0000477_pilon:48677..54597 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 640-735:5826 |
| Aaloc | 1-636:1 |
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