XLOC_034190 (mRNA) -

Overview


Name	XLOC_034190
Unique Name	XLOC_034190
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000348_pilon:20081..25674-
coding sequence from alignment at sc0000348_pilon:20081..25674-

mRNA from alignment at sc0000348_pilon:20081..25674-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_034190 ID=XLOC_034190|Name=XLOC_034190|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5594bp|location=Sequence derived from alignment at sc0000348_pilon:20081..25674- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGCTGTCATTACTTCAACAATGGGTTGGGTAAGTGTTAGGTTTAC
TTGACCATAGTAAATATTCTTAGTACAGGCTCACATCAACTTAGTTTTCC
TTTTCAAGCTACTTTCGGATCAAACAATTTAAAAATATCAATTAGCCCCC
CCCCCCCGCCGAAAGAACAACAAAGCCCTTACTGTGTCAACTACTGAGAA
AAAAATATAGCTTCTTTCCAGAATCTCCTCCCACTCGATACAATCGATAA
CTGTTTCCAATCGATGATCGATGACTAGTAGTGATGACTAGCAGTCAAGC
ACAAGTGATGAGGATACTTTAGACAATATCTCTATTTAAGATAGAGGGCT
CTCCTAATTTTATTTAGGTATCCAAATTTGGATACTTTGTTTTGACAATG
ACCTACTTTTTCTTAGTCTGGAGACCATACTCTGTTACAAAAATATATCT
ATCCTGTCAAAATCCCAACAACTTCATTGAAATACAGAGTATGGAATTAT
TGACTCAATTCAAATAACTTCAAATCACAAAAGAAAAACTGTTATCTTTT
CAAAAAAATTTAAAAGCTCGCGCCACTTCTTGAAACAATAGAGCTGTTTG
ACGTCATACTTTTGTTTATCAAATCATAACAATAAAATATTAGCCAATCA
AATTCTGCGATTGATTCTTGCATCTTGTATAATTCCCGGCTACTATACTG
TGTCTATACTTTGATATTTTTTTGAAACCACACAGTTAGAGAAGTCGGGT
CTCCCAGCTAACTTTTTCTTGACTGACTAATGGATAACCAATCCTACAAT
TACCGATGGTCTGTTGATTTTCAGAATCTATCAATATCAAATCCATTGAT
TGGTTATCAATTGGTCATCAATTGAAAAAGTCATTACAAAAGTGGGAGAT
TCTGGTTTTTTGTATTATTTCACTGAAAAAACCTATCAGAGCATCAGAAA
TTCAGTCAACCTATAGTAGGTATAGTTTTGGACGTGGTGCAGGCTAAGTT
GTAAGAATGTATGTGCCTAATCAGGATGTCATGTTGAATGTTTTGGGCAG
TTCCAGAAAAAAACCATTACCCCCTGTGGACGGCAGGGTTTTTTGGATTT
TTTTTTCACCTGAGAAATTTGAAAAAGGTTTCAGAAAATCCAGGATTTTT
CCTCATTATTTAGTCATATGTATTGGAAATTCCATAAGTATCGGAAAATC
CAATATTTTCCCATAAAAAATCTTGTATTTTACAGAAAACCTCAAGTTTT
TCAAAAGTAAATTGTTACAGAAAATCCATGTCGTCTGACAGGGGGTAAGG
GACTTTAAAACTTGAACCTCCAATTAAGGGAAGAAATTTTCATGGGAAGG
AATTTTTGCGGAATTTGATTACATGGTTCAAAAGTCTTGCAAAACTTGAT
TTTGTGGTTGAGAGAACGTTCTGTTTACAATATAATATAATAGTTTCAAT
CAGCAATTCCAAATTTCCTTTTTCTATCTCTAAATAAGGGTGACAGAATT
AGAAAAGGATATTGAGATTAGACCACTTTATAGTAATGTTTTTGGAGTGA
CCATGTTATGGTTTTGCCACTCTTTTATAGAGTCAAAATGTTATCCTGAT
AAGCAAAAAGTTTATTTGTTAGTATATATTGAGAGAATGACCTTACATCA
TAAATAGTTCTGACGTTAATATCCATTGCAAATGCAATAGTTTCAAAATC
CAAGGATGAATGAAAGTTTAAAGTTTTTCAAGTTGCTGAATTTAACCTGT
CGTGGTTTGCACTCTATCCCGCTTATGGACTGCATTTGTGAATTGTTTTG
CAAACTCCTTAATTTTAACTAAGCCCTCTGACTCTAAGCATTGTGGCTGC
TTGATTATCCTTACAATATGGGTTACATTTTTCATCATATACTTTTATAT
AGTTATGAAAAGTCATTAATTGCAGCCATATAAGTCCTTAGCTGATTTAC
TTATTTATGGTTTTTTCCTGGCCAATCAAATTGCTTAGATATTTTGAAAT
TTCGGATAGAACCCAGCATTATGTTAAAATGTCCCTAAAAACTATAAAGA
GCTTATTAAGCCTATTTTTTGGATCAAAGATACACAAAGTTGAAATTTTC
TCACTTTTTCCTACAAAATTTTAACTTTCTTATACATTTCTTTGATTTAA
TTCATTTCCTTTTGAAGATATTTTGTGATAAAAGAATGTATCCATGTCAT
GTTATGTGTTTACTTGGTTACCAATGTTTATTCAAACTTATACTATAGAG
CTTATTTTCATTCTTCCTAGCACATCCTCGTTCGAGAAATTAAACATTGA
AGATATATATCGAAAGCATCCAACGAGGACCTTTTTTTAAATATCTGTTT
CCTAGACATAGCCTTCCTGGAAAATTTGATCTGTTGGCCGAATATTTCAA
AAATCTTATTCCTAGAAATGAAGATCTGTTTCTCCGCAAAACCTAAATTT
TTAATCTCAAAGTATCTTTCCTAGAAAATTTGATCTGTTTCAACAATTTT
CAGAATTAAAATTTTGATCTGTTTTCCAAGATAGGATATCTGTTCCCCTC
TCCTGGAAATTTTCATCTGTTTCCCTTTCTTTTTGTTATTGATATCTGTT
TCCCCCATAAAGTTCAATCTGTTTCCAATGCAATATCATCTTTTTTTGGA
AACAGATATCTGTTTCCCAATTTATTATGTCATCTCCTAGAAATATTGAT
TCTCTCTGATGACGTCGTCAGCTGGAGCGGGGAAACAGATAGCTTTAAGG
AAAAGGTCTCTCCTAGAAAATCGGATCTGTTTCCCCATTTTTCAAAAAAA
GCTCTCTCCTGGAAAAGGGAAACAGATATTTCGGGGAAATGGGCTCGTTG
GCTGCTTCTGATATATTTTCAACAATATAGTATAAGATTATATATAATAA
AGTATTTTGAACTAATGACAGATTTTCAAAAGACATGTTAAAAATTAAAT
GCTTATCAAAATAGCTTTAACAGACGTTCGCTTGCATGTTATTTTAATTT
TGTATTAACTGCTTGAGAAAATTATGTCGTTTCCAATAATTGGTTGACAG
TTAATGAGCGCCTGAATTGTGGTGTGGTAAATCAGGCATGCGAAATCTGG
TAAAGCATTTAATTGTACTTTAGACTTGTATATCATGAGCAATGATGGTT
AACTCATATAATATTATAAATAATAAAGCTTTCTTAGAGGATTTTTAACA
AAATACAAAGCTGGGTATTGTATAACATAAGGTCATTTCTGAAAGAATAA
AAGTCTAGAATATGCAACTACGAATGAACGCACTGTAAAAAGATCAAATA
CTTTTGAAAGTCTACGGATATTGACGTCTTTCAGGCGTTAACAAAATGAC
CAGAAATAACCAGGTCAATGTTTATAGGTCTATCTAAATGTTTTTGATTT
TAATCTAACTTAACAACAAGAGCCACATTTTCCGAAAGGTTTATATACAC
ACTGCAAAAGGTTTAGAAGTTTCCTGAAAGCTTTAAGGATAGATATTTAA
AGGAATCAAATCCGTAAGAACTTAAATTGATGACGAAATTCATAGAAAAA
AAATCGTTAAAAGAAGTTAGTATTGAGTTCCTGCATCTATTTTGTAAACT
CTTGGTTACAATATTATATTAATATTGAAAAGATTTTGCAGCCGAAATCC
TGACTTAGTGTTAATGAGTTTGTTTACCAAGTGTCCTAACTACTGTGAAC
ATGTGCGTTTTTCTCCAAGGTTGCTTACTTGCGTCAGAGTTGCTCAACTA
TAAAGACATTTTAGGTTGTGAACAGTGAATAAGATCATAAAAAATTAAGA
CGTCCTAATAAAATAGTGAGTATTTCTCATAATTTTGCGGGCGCGTTCTA
GCACGTTTTTAGTCTACTAGCAAGCTAGACGACTAATTCAGACATAGTAG
AATGGATTTTAGTTTATACAAATTAAATCCCGTAACAATAATCGTATTAT
CATATAACGCCTATACTACTGTATTACACGCATTATGAACGACTCCAGTC
TAGCACGTTTTATAAAGTATATCGAGATCTCTAAACATTTAAAGAAACGA
GTCCTTTAATCCATTTTTTTAATCAAGGCCATTGACGTCTTTCTGCCCTA
AAATTATGATAACCAATATCCTGTAAACAAGCCTTTTTTTCACATTTTCT
ATTTGTTAAAAAAATATTTTTTATTTGATTTAAAGCTACAGTATAAGTTC
CAACAATTCTTCAAAGGCTTGGGTTATAATATCGTCAAAGACTTGTTTAT
AGCGTGTTGGAGCTATCTAACTGAAGATGAATTCATTAACGAATATGGTA
AACATATATTTCAGACTTTCAAATGTAATACTGGTTATAGATTCATTTAT
TCCCCTAGTTGACGATGCGATATTTTTTCTTCTTAGGTGACTTCCCTGAT
CTCAAGCACTTATGGCGAAGACGGGCATCTATCGAGACGTATTACTCACA
CAGCACTGACGTTCTTCGCTACTGCCTTACTGCAAGCTGTTTTCCAAAAA
TACATTTTTCATTGCCCTGATAAAGACTGGATCTCTTTCTCGTACATGTG
TTTTTTTATTCCGGCGATACCCTTGTTAGTAACAGGATGGCTATCGAATA
CAGAATTCCAAAAATCGATTCGTGGGATACTCCATGGCTGTTGGAATCGA
GAAGAACGAAAGCGCACCCGTCTTCTGGTCCAATGGCGTCATCTTTTCTT
CACAATCATCAAAAGTCACGTATCAGCGTACGTTGCGCCTTTCTCCTGGT
TCATGATGTGTCTACTGAACCGTGATATAATGACGTGCGCTGTTTACGGG
CCACCAAGTAATCAAACAACGTACGTTAGACGGAAATACGAAACACTTGC
AGTTTACTCACAATTGATTGGCTTTGATATGCTTGTTGCTGGTACTTGTA
TTTTGGCCATTATTATAACAATCAAACAATGTTTCAGGAGAGCAAACCCA
GGGAAAGGTAAGCTTTTCTTCATTTTTCATCACATTTTAAAAAATGTTGC
TTGATTACCATCGAGAGTTTTGTAAAATGCTGTTTTTAAACCCCGACTAT
TTGTTTACATTTATTAAAGGTTACTGCTTATTGTTAGAAATTCTTTGAAG
CAAGTTAAGAGATTTCTAGCTAGCTTTTCAATTTGTTCTTCCCTTTTTTC
TTTTCAGACATCGTTGAATTTCAATGTCTCGATAATTACGCATCATACGA
AGCAGACGCTGCTCGTAAATACTTCGAAGACGCATTACGCGCACAAGCAG
AAGAAAATGGACGTCGTAAAGCGCAAATGCTGCTCGATGCTCGGAAACCA
AATCTCGATAATTTAGATGGAGTCGAAAAGGCGATGGGCGAAATGTCTTA
CGAGCACTATGCATCTGTTCGAAACGCACTTATGCAAATTTACCCGAAAA
CTGATAACCCCTCTGATCGCAAGGTGCAGTATTATACTATTGACGCTTTT
CATGAAGAAGCGAGAGTCTTTCGAAAACATCTAGAAGGCGTTTCGCCACA
AGAGCCGAATAGTATCGAGCTAGGATTAACTAAGGATGGAGAGAAAATCC
ATTTGATAAATATGGACGAAAAACATAAAAAATATAATGTTTGA

Coding sequence (CDS) from alignment at sc0000348_pilon:20081..25674-

>XLOC_034190 ID=XLOC_034190|Name=XLOC_034190|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2082bp|location=Sequence derived from alignment at sc0000348_pilon:20081..25674- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTGCTGTCATTACTTCAACAATGGGTTGGATGACTGCTGTCATTAC
TTCAACAATGGGTTGGGTGACTTCCCTGATCTCAAGCACTTATGGCGAAG
ACGGGCATCTATCGAGACGTATTACTCACACAGCACTGACGTTCTTCGCT
ACTGCCTTACTGCAAGCTGTTTTCCAAAAATACATTTTTCATTGCCCTGA
TAAAGACTGGATCTCTTTCTCGTACATGTGTTTTTTTATTCCGGCGATAC
CCTTGTTAGTAACAGGATGGCTATCGAATACAGAATTCCAAAAATCGATT
CGTGGGATACTCCATGGCTGTTGGAATCGAGAAGAACGAAAGCGCACCCG
TCTTCTGGTCCAATGGCGTCATCTTTTCTTCACAATCATCAAAAGTCACG
TATCAGCGTACGTTGCGCCTTTCTCCTGGTTCATGATGTGTCTACTGAAC
CGTGATATAATGACGTGCGCTGTTTACGGGCCACCAAGTAATCAAACAAC
GTACGTTAGACGGAAATACGAAACACTTGCAGTTTACTCACAATTGATTG
GCTTTGATATGCTTGTTGCTGGTACTTGTATTTTGGCCATTATTATAACA
ATCAAACAATGTTTCAGGAGAGCAAACCCAGGGAAAGGTGACTTCCCTGA
TCTCAAGCACTTATGGCGAAGACGGGCATCTATCGAGACGTATTACTCAC
ACAGCACTGACGTTCTTCGCTACTGCCTTACTGCAAGCTGTTTTCCAAAA
ATACATTTTTCATTGCCCTGATAAAGACTGGATCTCTTTCTCGTACATGT
GTTTTTTTATTCCGGCGATACCCTTGTTAGTAACAGGATGGCTATCGAAT
ACAGAATTCCAAAAATCGATTCGTGGGATACTCCATGGCTGTTGGAATCG
AGAAGAACGAAAGCGCACCCGTCTTCTGGTCCAATGGCGTCATCTTTTCT
TCACAATCATCAAAAGTCACGTATCAGCGTACGTTGCGCCTTTCTCCTGG
TTCATGATGTGTCTACTGAACCGTGATATAATGACGTGCGCTGTTTACGG
GCCACCAAGTAATCAAACAACGTACGTTAGACGGAAATACGAAACACTTG
CAGTTTACTCACAATTGATTGGCTTTGATATGCTTGTTGCTGGTACTTGT
ATTTTGGCCATTATTATAACAATCAAACAATGTTTCAGGAGAGCAAACCC
AGGGAAAGACATCGTTGAATTTCAATGTCTCGATAATTACGCATCATACG
AAGCAGACGCTGCTCGTAAATACTTCGAAGACGCATTACGCGCACAAGCA
GAAGAAAATGGACGTCGTAAAGCGCAAATGCTGCTCGATGCTCGGAAACC
AAATCTCGATAATTTAGATGGAGTCGAAAAGGCGATGGGCGAAATGTCTT
ACGAGCACTATGCATCTGTTCGAAACGCACTTATGCAAATTTACCCGAAA
ACTGATAACCCCTCTGATCGCAAGGTGCAGTATTATACTATTGACGCTTT
TCATGAAGAAGCGAGAGTCTTTCGAAAACATCTAGAAGGCGTTTCGCCAC
AAGAGCCGAATAGTATCGAGCTAGGATTAACTAAGGATGGAGAGAAAATC
CATTTGATAAATATGGACGAAAAACATAAAAAATATAATGTTTGAACATC
GTTGAATTTCAATGTCTCGATAATTACGCATCATACGAAGCAGACGCTGC
TCGTAAATACTTCGAAGACGCATTACGCGCACAAGCAGAAGAAAATGGAC
GTCGTAAAGCGCAAATGCTGCTCGATGCTCGGAAACCAAATCTCGATAAT
TTAGATGGAGTCGAAAAGGCGATGGGCGAAATGTCTTACGAGCACTATGC
ATCTGTTCGAAACGCACTTATGCAAATTTACCCGAAAACTGATAACCCCT
CTGATCGCAAGGTGCAGTATTATACTATTGACGCTTTTCATGAAGAAGCG
AGAGTCTTTCGAAAACATCTAGAAGGCGTTTCGCCACAAGAGCCGAATAG
TATCGAGCTAGGATTAACTAAGGATGGAGAGAAAATCCATTTGATAAATA
TGGACGAAAAACATAAAAAATATAATGTTTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_034190	XLOC_034190-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000348_pilon	genome	sc0000348_pilon:20081..25674 -

Properties


Property Name	Value
Aaloc	607-1041:436
Aaloc	34-603:1209
Aaloc	1-33:5595

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XLOC_034190 (mRNA) -