|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000253_pilon:309845..315943+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_031834 ID=XLOC_031834|Name=XLOC_031834|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6099bp|location=Sequence derived from alignment at sc0000253_pilon:309845..315943+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACAGCACAAGACACCAGAGAAGCATATATTAAAGTATGTATGGA
GAAGGGAGTTGACATTAACAATGAAGTTATGTTCCTTATAAATCGAATGG
AAGAACTAAATGAACAGTAAGTATTTTTACAGGTTgtgtttaaaattcaa
aaattatctcaaaattcagcaaaattttaaagaatctGACGGAAATGATT
gcctaaaatcaattttttgtctgaaatgaaaatTCTTCCTTTTAACACTT
GGTCAGTTGTGTGTTTCTTTTTGTAGCGGTGAGCCATCACCACATATCAT
GAGACTTCATGGTAACAAACGGAATGATCAAAATGAAATGTATCGGAGAA
GAATTGATGACAATGTAAGATATTTAGAAGAGGCTTTGCTAATCTCCCAA
GATGtccttttaaagtttttcagattattgatattttgaaaaactaaatG
GTCTGCAATAAAAAAGggtactctcgggtgcctaatgtGGGAGATTTCGA
ATGTTGCACGAGAaacagagatctgacctcaaggagaaaaagtgttgaaa
atactaaataaaataaagatgaaacataaaaaggcactaatatttttata
attatacgtttttttccattttttttgaatttttctaaatcaaaccaatc
aaacattctgtcaagaaatgagaattttaattttatgcgaaaaagaacca
acaaaccaatagacataaaatttaaaaagccaagcagaaaaacaaaacac
agcaatcacataaacacaaacTTCGAGTTTGTTATATTCGAGCGTTtgat
ttgaactttttgaaaaattggtagattttttttggtacgtttattttagc
ctgtacgtttatttattttagctctgatttctcgcctgtacgtttattaa
ttccagTTTTATTcccccccctgtacgtttattttggtctgtacgtttaa
ggcacccgagagtacatGCATTTTTAACTTCAACAAATCTTCAAATTTCC
TCAAAAGTATCTCTTGATATATGGCATTGTAATGTCTTTAGAACTTTCCC
ACTCAACTGTCATTCTTACCATTTTGTTTTACATTCTTCTATTTTTTAGG
AGCTTGAGATATTTTCTATGTTATTCACAGGAAACACTTACCTTGTTGGA
ATTGATCTTGGATACAACTTGATTACTGATGAGGGAGCTAAACTAATTGG
AAAATTATTAGAGgtacaaaaatcatttttcgttCATGGTTCTTTTCGTT
ATATTGAGTTTTTGCTTGTATGTAGAGCGCTCATACTCATAGTTTCTACA
CCCAAGAAACCCAGAATACTCTCAACTTTTAGTCAAAGACTCTCTAAAAG
CGTTGATAAGAACTTTGAGAGTCACTcttgaacttttttttattgaaaag
ttatCTAAAACATTCCAAGCTATAATTTGGTAAATTATTCtactaaatat
attttttgtaggAAACACCAAGCTTGGAAACATTGATTTTAAGCTACAAC
GATATTGGGGTGTCTGGTGCCACCGTTATCGCTAAAGGAATTCAGGTAAC
TTCTCTCTGATTTAGAATACTTCGTTCCTCCTTGTATTAATCagatactt
acttacttactgcacGGTTTAACGTCCGTTGTTCCCAGCAGCTGGGGTTG
GACGCTGATTTCTCTAACTACATCAGCAAATGAGTGATAGAGGCAGCAAT
GGATTGAATAttctaaatttgaatttctaaacaaatatcaaatataTTGT
CTAATGAAGGCACCTAATCTTTTagattatctttttttctttcatgtcCA
TTAGGACGTCCATCATGACGCTAGCTAGTAAAGTTCAGTGACATTGACTT
TCTTATATTTCTGCCGAACAGTCATATGCTTCCTACCACTTTCGCAAGTG
ATAAAATTATACAAgtttttgacttcaaaaaccCCCTTAACTTGGGATCT
ACAAAAGTTGGGAAATTTAGACGAGGAAGATAAGGAGGTAGATAATGTTG
ATATCTAACTTATTTCTCAGACCTTTTGTGTAAAAGgtctgaaaaataat
ttttgctcaaatttgaTAGGCTAAAGTAAGGGATTCAAGACTTTATTATA
ATTGCCTTCTCATCAAAACGCTCTTCTTTTTAGATGAATGAAACTCTAAC
CTGCTTGAAAATGGATGGCAACAAATTTGGCCGTGTTGGTGGATTAGCTA
TTGCTGGTGCTTTACAAGTCAACACAACGTTAGAAGAGCTGGACATTACC
AATACTGAACAAGtaattttcatattattttcgATTAATAACAATTCAAC
AGAATCATCGAGAAAGTTCATTTCATCATTCGGCATACAGGCTGTTTCTC
AAACAGTAAagtgaattgatagaaaatctaaaagctcaatttcagttttt
tgaacaatgaaaacttttttttattttgctttttcttcatTGTAAAACCA
GGGAAATAGACCTTCAAAtgcttttttagtgaaaaaagttgAGTTACTAG
ATACTCTGTCAATTTTACTTTGAAGTATAGAGTATACtttttttAGTGAA
ACACCCTGTATTTCAAATGACTCAAAACGTTATCTTATAGTTTATTTAAC
GACCAAAGCAGCTTTAAACCTTATCGTTTAGAAAATTTGTCGCCAAAAAC
ATtcgccaaaatatttcttcactTGTGTACTATTCCTTTTGTCAACGAAT
TTTGTACACTAATAAAGTCGgatagataaacgtcgaaataCAAACTGGAT
TTCAAGTACAGTCAATCAAGTCAAGACCTTGATCTAACTTATAATTGTAG
ATATTAATTTTGTTGCCCTAGTTTGCCTTAAATATTTTGCCCTCATATCT
TCAAATTTAATATCTTCAAAGCTTTTAAGCTAATTCCGTAGCTTAGTATT
TTTCAATTGGTGATCTACaacatttttattattatttaccACAAACAACC
ATTTCATTTTCTGCAGGACACGCAATCTTTGATAGCATTGGCAactgttt
tgaaatcaaattgtCATCTGAAGAAATTGGTGATTGGCAGACCACTTCTT
CATTCAAAGCAGGTTCAATTTGCTACATAAACAACAAGTTTTGATTGATC
CTTTGCATAGAAAAAGATAACACAATATTCTTTACTTCACTGCATCACAA
CCAGCACAATTTATCCttttttttGTAGGAAGACACGACAATACATTTCG
CAAGGCTGCTTGAGGTTGGtacatatatttttcattttaaaatgtaTTAT
AAAGCTAATTCTGAAAAGAAGTTTCGCCGATCCCTGATTCGAAAACGTTG
CAATTAGTTaagaattgaaattattttttctcaaaacacaTTTCCAGTAA
GTTTTCCTCTCAAGATTAGCCGCtttatcccgcatcagtaaAGATTCCAG
CGATTTGATTGGCCAAGAGCCGTTAGGAGTCGGGATATAATTCCCTATCT
GCCCTCTTCACATTCGATTGATAAAAAGCATATCAACGCATACTGCCAAA
TGTGCTTTGTAACGTTTTGTTTTGATCCATTATCATAATTTATCCCAGCT
CGAGAAGATTATTTTACTAAATAATAGCATTAGACCACCTGCAGAATTAA
AAATATGTGATTCTTGAATTGATTTTAAAgtacttttatacaaaataaAG
TATCTATCACCAAAGGATAAAAAAGATATACGATTTCTTTATAACACCCA
CTTTTTTGCTTTCTCTCCAGGTCAATAGAagtatcaaagaaattcatctT
CGTAATCATGGAATGgttaattttggtgttgaacAAATCGTTAATCACGT
CATGGATAATATGACATTACTGCATCTCGATGTCAGCTGGTAAGTCAGAA
AACATACCTGTATAGTCAATTCTCCCTCTCGAAATTACCATTCTTTTATT
GGAGTTAGGCCCAAGTATTGGACCCCTCAACTGAAAAGTCTTACAATATA
CTGTCCGGAATTCGAATTTCTCAATAAAAGGGAGCTTGTCATCCCTCGAT
ATATGAAAGACCATGTGAGTGTCCTTGCCAAAGACCCATTGTTCATTGAA
AAGTCGATATGAGCACCATACCATACCAAACACTAAAATTCGGGCCAATT
AAAAAATCTCTACTTGATCTTTTAAGACTTTCAACCATTAAAAGcgataa
aaattatttacatcGACATAAACCATTTTTTGATAATTACATAAATCGAA
GTGAGACTGTGGTGATTGAAATTTTTGAGCCTTGAATTTTTAAGTGAttc
ttaaaattctttaaaagaaGAGAAATGGATTTCTCTTCAAGtattgtcaa
caacaaaatttctttcttcatttcatCCCCCTCCTCCAACTGGCTAGAAC
GTTCTCCACTGATCATTGGATGTTTAATCGTATTCTTTCCCATATTTACT
GTCAGGAGAAAGTTTTGGTACATAAATTTGCTAATTCTCCCACTTTTCCC
atcaaaaagtcaaagttttgatctaaaaaagttgtaaaaaccacaaaagt
tgtaaaaTATCTTACTATTCTTCCCACCTCAAAAGAGGTTCCTTGAAAGT
TGTGAAGATGTGAATCATGCGTATCATCCTCTAATAGCAATTGAATAaag
aactttcactttcgatttcatgaAAGAATAAATTATATAGCGGGCATAAA
TTACAATTTTCCAAGGTCacctttacttgaaaaaagttatggaaatattt
tctatttcgtgCTACCTTGTTGCAACCATGGAAAATCCCtcatttttata
aacatttagtTTTGGTTAGGAAAGATGTAAAAGTGCGAAAGATTGGAAAa
gtggtaagtttttttttccaaaaactttcTCTTGtgtttgaattaatttt
caaaattttacgatCGGTTTATTCTAGCAATCAATTATCACGGGATGGCA
TGGAAAGTCTTGCGAAGTATTTGAAGAGCAATCCACCGTTGCGTATACTG
AATGTTGGCTATAATCGAGCTGAAGATGATGGTGCAATCGTCCTTAGTAA
TGCCCTTTCTCGCGGCAATATCAACCTTGAAACGTATGaaactttgtttt
gacattttacacTTCATCTGTGTCTGTTTATGTCCAATAAAGTCGACCGA
TAAGTTTTATTATTAGTTTTCATCAGGctggatttttttgaaaacttttt
tttttgtcatctatACATTTATGTTCAAATCGCCCGTAAAAGAGGACCCA
CCCGAACCCCCTTTCGATCTTATTATAGACTTTAGATAGAAGGAGCTAAA
AAAGAAGTCTTTGTCGAAGTTACCTAGCTTAAATTTCGATCATAACATTG
CATTATATCCGTTCTATCATAGATTGGTCATTCGAAACAATTCTTTGACA
GGAAAAGGTTTATGTGCGCTTGCCAAATCCTTAACTCTTAACACGACACT
AACACAACTTTATGTTTGGGGAAACGAACTTGATACACCAGCCTGTCAGG
TAAGAATTCTTCATTCCCCTTACCCTCCTTGTCAAAGTTGACTTCAACAG
GTTCAAAATTCACCTCCCCTAGCCTGTATAACATTGAtagttatttatca
aaaagtagtATCGATGTCTTTTAATGCTGGAACAgtcataatttattttc
aatatctttcATTAGTTAACTTGCTGAAATTTTTATAAGACGTTGATTTG
CTGACTTGGTTCTCAGTTgaaaaggcattcaaaagaagaagatcaacaaa
tagaagaaaattcgaaaaagattggaaaataagaatcaaaaaataaaact
tcttgtagaataataCTATGATCAAGatttagagttttttttctgttgat
aatattccactcatgaTTATCTTATCAAGGAACAACGATCATTGTAACGC
TatttaattcgaattctatcaaaagttgtAGTCTTTTTGGTCTCTGCTGC
AGattattgagacagactttagtagtTAGGTAAGACGAGCCAAAAATAAC
CTtgtaaaatttaaatatattttcgtTACCAGGCCTTTCGAGGGTTGCTG
ACAGGTGTCATTCCACGACTTGCGCCAAACGATACAGATATCAAATCATA
TGTAGTGGATGGTGTTCCTCGTCTAGCTCAAGTTGCTTGTCCTTATTGA Coding sequence (CDS) from alignment at sc0000253_pilon:309845..315943+ >XLOC_031834 ID=XLOC_031834|Name=XLOC_031834|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000253_pilon:309845..315943+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACAGCACAAGACACCAGAGAAGCATATATTAAAGTATGTATGGA
GAAGGGAGTTGACATTAACAATGAAGTTATGTTCCTTATAAATCGAATGG
AAGAACTAAATGAACAATGGCAACAGCACAAGACACCAGAGAAGCATATA
TTAAAGTATGTATGGAGAAGGGAGTTGACATTAACAATGAAGTTATGTTC
CTTATAAATCGAATGGAAGAACTAAATGAACACGGTGAGCCATCACCACA
TATCATGAGACTTCATGGTAACAAACGGAATGATCAAAATGAAATGTATC
GGAGAAGAATTGATGACAATCGGTGAGCCATCACCACATATCATGAGACT
TCATGGTAACAAACGGAATGATCAAAATGAAATGTATCGGAGAAGAATTG
ATGACAATGAGCTTGAGATATTTTCTATGTTATTCACAGGAAACACTTAC
CTTGTTGGAATTGATCTTGGATACAACTTGATTACTGATGAGGGAGCTAA
ACTAATTGGAAAATTATTAGAGGAGCTTGAGATATTTTCTATGTTATTCA
CAGGAAACACTTACCTTGTTGGAATTGATCTTGGATACAACTTGATTACT
GATGAGGGAGCTAAACTAATTGGAAAATTATTAGAGgAAACACCAAGCTT
GGAAACATTGATTTTAAGCTACAACGATATTGGGGTGTCTGGTGCCACCG
TTATCGCTAAAGGAATTCAGgAAACACCAAGCTTGGAAACATTGATTTTA
AGCTACAACGATATTGGGGTGTCTGGTGCCACCGTTATCGCTAAAGGAAT
TCAGATGAATGAAACTCTAACCTGCTTGAAAATGGATGGCAACAAATTTG
GCCGTGTTGGTGGATTAGCTATTGCTGGTGCTTTACAAGTCAACACAACG
TTAGAAGAGCTGGACATTACCAATACTGAACAAATGAATGAAACTCTAAC
CTGCTTGAAAATGGATGGCAACAAATTTGGCCGTGTTGGTGGATTAGCTA
TTGCTGGTGCTTTACAAGTCAACACAACGTTAGAAGAGCTGGACATTACC
AATACTGAACAAGACACGCAATCTTTGATAGCATTGGCAactgttttgaa
atcaaattgtCATCTGAAGAAATTGGTGATTGGCAGACCACTTCTTCATT
CAAAGCAGGACACGCAATCTTTGATAGCATTGGCAactgttttgaaatca
aattgtCATCTGAAGAAATTGGTGATTGGCAGACCACTTCTTCATTCAAA
GCAGGAAGACACGACAATACATTTCGCAAGGCTGCTTGAGGAAGACACGA
CAATACATTTCGCAAGGCTGCTTGAGGTCAATAGAagtatcaaagaaatt
catctTCGTAATCATGGAATGgttaattttggtgttgaacAAATCGTTAA
TCACGTCATGGATAATATGACATTACTGCATCTCGATGTCAGCTGGTCAA
TAGAagtatcaaagaaattcatctTCGTAATCATGGAATGgttaattttg
gtgttgaacAAATCGTTAATCACGTCATGGATAATATGACATTACTGCAT
CTCGATGTCAGCTGCAATCAATTATCACGGGATGGCATGGAAAGTCTTGC
GAAGTATTTGAAGAGCAATCCACCGTTGCGTATACTGAATGTTGGCTATA
ATCGAGCTGAAGATGATGGTGCAATCGTCCTTAGTAATGCCCTTTCTCGC
GGCAATATCAACCTTGAAACCAATCAATTATCACGGGATGGCATGGAAAG
TCTTGCGAAGTATTTGAAGAGCAATCCACCGTTGCGTATACTGAATGTTG
GCTATAATCGAGCTGAAGATGATGGTGCAATCGTCCTTAGTAATGCCCTT
TCTCGCGGCAATATCAACCTTGAAACATTGGTCATTCGAAACAATTCTTT
GACAGGAAAAGGTTTATGTGCGCTTGCCAAATCCTTAACTCTTAACACGA
CACTAACACAACTTTATGTTTGGGGAAACGAACTTGATACACCAGCCTGT
CAGATTGGTCATTCGAAACAATTCTTTGACAGGAAAAGGTTTATGTGCGC
TTGCCAAATCCTTAACTCTTAACACGACACTAACACAACTTTATGTTTGG
GGAAACGAACTTGATACACCAGCCTGTCAGGCCTTTCGAGGGTTGCTGAC
AGGTGTCATTCCACGACTTGCGCCAAACGATACAGATATCAAATCATATG
TAGTGGATGGTGTTCCTCGTCTAGCTCAAGTTGCTTGTCCTTATTGAGCC
TTTCGAGGGTTGCTGACAGGTGTCATTCCACGACTTGCGCCAAACGATAC
AGATATCAAATCATATGTAGTGGATGGTGTTCCTCGTCTAGCTCAAGTTG
CTTGTCCTTATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253_pilon | genome | sc0000253_pilon:309845..315943 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1066-1182:5983 |
| Aaloc | 940-1065:5324 |
| Aaloc | 784-936:4879 |
| Aaloc | 664-780:3721 |
| Aaloc | 628-663:3179 |
| Aaloc | 532-627:2967 |
| Aaloc | 403-531:2134 |
| Aaloc | 319-402:1462 |
| Aaloc | 205-318:1100 |
| Aaloc | 118-204:278 |
| Aaloc | 1-114:1 |
|
