XLOC_031738 (mRNA) -

Overview


Name	XLOC_031738
Unique Name	XLOC_031738
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000269_pilon:373570..380945+
coding sequence from alignment at sc0000269_pilon:373570..380945+

mRNA from alignment at sc0000269_pilon:373570..380945+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_031738 ID=XLOC_031738|Name=XLOC_031738|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7376bp|location=Sequence derived from alignment at sc0000269_pilon:373570..380945+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaacaccatCAAACAGCATCAAAATGACTAAAGAATTTCTATTACA
AAAAATTGGTGGATATATGCTATGTGGGAAAACATTAGGGAAAGGATCGT
TCGGGCGAGTGGAATTAGCCATTCATTGTATTACCAACACCAAggtaaaa
gaaagatttttgaatcACAGAAAGTTATCGCTgtctaatttgattttcaa
ggggaattggattttcatcgaataagagagcgtatCGAACAGTAAAGCgc
cgtttatgagagtttcttgttgacggtgataTTCAAtgttatcgaataat
agagcgtatcgaatagtataACGTCGAATTGGAGCTCCTCCAATTTGAAT
aaagttttgcggaatttaaatGCTGGGGTTGAAACCATTCGCCAAATTCT
TTAGTTTCATTGGTATGTAATTTCGCGGATGAATTGGCCACAAGTACCAA
ATAGATAATGaacatcaaaattaatttcatttaattaaAGAAATTCTTTC
ATTCTCATTAAATTGATTGATCCTCCTGaatattttcaatgtaaagTTTA
ACCCTTAGAAGGCGAAAGGCGTATATATACGTAAATATACgtacagtctt
ttggtcataactcctgaccacttgagattcagagaaaaaaaatctgctat
tatTTGTAGCTGAaattgtagctgagagaaagagctttccaacgatacca
aagttgatacctgaataaTTTGTCCTGGTCAAGAAAtggcctttgaaaga
ataaatttccagaaagaaattatgaactttttggcctttttcaaaaaagt
tagcggcTTGGAAAGGTTAAGAACAGAAGCGTTTCTCGaagtttttttca
ttctcattttccagttaaaaatgcactgaaacagaatgaaaatggaaatt
tcTCGGAAATTCAATCTTCTCatatcaatttttctttcataggTCGCACT
AAAGATCATCGACTTCAACGACATATCGGAGGAATACATCAAGAAAAACC
TTCTTCGTGAATCATCCATTTTAAAGTCACTTCGGCATCCAAATATCGTC
AGACTTTATGAAGCTTTAGCGCATCATCAAACTTATTGCTTTGTTACAGA
GTATTTGGAAGGAGGAGATTTATATACGTATATGCAGCGCCAAAGAGACA
AAAAATTCTCCGAAAAGCAATCTAGATTATATTTCGTGCAACTCCTGCAC
GCCGTTCAATATCTACACAGTAAAGGCATAATTCATAGGTCAGTAACAGG
TTTGTTGGAGCAgtgtaaaaaattgtttttcaattatCTCGATTTTCTTT
CGagtattttttggaatttctaaTTCTTTAGTGTCTGCTGTTAAAGTAGT
AATCTAATAAGTCACCATCAAGTAGATTAGAGATATATCTCTCTAGATTA
GAAGAGTAGATTAGAGATATACCGGGTGGTCCAGAAATAACATGTCGAAA
TTTAAAACCTAATTATCTCGAAAAGTAAACATGGAAAaaactgcaatttt
tttttattttttatttaacataAATCTTATCTAAgttctaaataattttt
ttgctaacACTTCTTTTATGAGTTTTAGAAATATCACCTTGGTAACTATA
CAAATTTTCCTGACCCTAGCGGTCAAATTTTTGGCACaattataaaaaga
attttggacataatttttttagaCCACCCGGTAGATAGATTAGAGTAGAT
TATAGTCTGCTTGAATGACGAATTCGTGCTTCATTATAGAGAAGtgctac
ctgcggttttgtagaggtctgcgattcaaacTAAGTAGATTAGAGATAAA
GGACGATTCGTTCACTTTCAGAATGAGTACACCAATCAACCCTTATATCA
AAGCATGACGAGGCTTGGGttagggacaagctggagtttttacaagctct
ttcttgatttggtcggtcgttaaccagtaatacaacaattttattgcttt
ttgtaaagaatgcgtcattttcattgcttcaaatgaccaattactgaagt
atcttataaaaactccagaacaTCCCTTGGGTTAGAACCTCGGTTAGAAC
CCTCAAGATAtgttgacgtcaaatttttgaacaatacatgtttttttata
agaataacttctataagaatatcagggtgagatttcatagttagaacaat
aggcctattgtttagaacaatagaaaaataagaataatgctcaccctcag
ccaaagtacactattcttattaaaaaaagagatgccttggagtttttaca
agatacttcactaattggtcatttaaagtgatagagatgacgcgttcttt
agaaaaagtaataagattcttttattacatcttaacgaccaaccaaatca
aataagagcttgtaaaaactccagcttgtccataaaaaagcgtgtattag
cTTAGTCGCAATTATACTCAATAACAGGTACTCATCTTGACGAATCTGGT
CAACTTTTCCCCGAACAGACATTTCCTCGAATAtaaatgctttttttatt
tgacagtGATGTGACGAGTCTGAAACTAGAGCATTTCaaaaaaaCACAAG
AATTTGCTAGCCGTTCAATCTTGAATAAATTTTCTGCTACCTTATAGGGA
TTTAAAGCTCCAAAATATTTTGCTGACAAAGACTTTGAAAACCATAAAGA
TAGTAGGTAAGTTAAGGAAGTTAAATATCACAAAAATCCAACCAACTCTA
TTTTTCCATTTAAAAGAATCGCTTTTAACCCAACGGTCTAAAGAccattt
agaaaaatattttgattaaacTCTATTTGAGGTATAAAAATGAACTTGCT
CATAATTATATTGGCCCATTTTCCTTAAAAGTCAACCACAGTTTCCACAG
CATTAATGAAAGATATCGGGATGGATCATAGCAAACCATGGCCATGAAGC
CTGAATGAGAACATTTCTCATTTaagtttccttttgaatttccGCTGACA
AAGCAGGATAAAGCCTGTTTCAGTAGAGCAAGAAAACAATGACTATTGAC
CTGAGTATCGTTTCTGTTCCATCATTTCCCTGAGCCGAGACTCCTtcaat
gggataaattttcacggggattaaattttgcggatttcgcggatttgttt
gtaagtcccaatggaaatttggaaaggcctcatccgcgaaatttttctaa
actaaactcaaaaagtgtcaaataaatactttttgaatgtttactggcgT
CACAGAGGCGCtgataatgcgtatttcaacaatcaagatgcatgatttga
cagtaataggcacaaaatcgtgaaaatattgtcacccaatagtgaaaaat
aaaatttcgcggataagctcaaccgccaaatttaatcctcgcgaaaatta
atcccattaaagtatctcTTATATTACTTTTCCAAACAAGGAGACAATAA
CTGAGGacgaggattggtttattttagATTTCGGTTTGAGTAATTATTGC
GGCAAACACGATTTATTAAAGACCAGATGCGGATCCGCACTGTACGCTGC
ACCAGAGTTCTTCGAGAAAGAAGTATCGTACGGCCCTTCCGTTGAAATAT
GGAGCTTGTAAGTCGAAATCGTACTGCTTATACTAAATCCATATTCTATC
TGTTTTATACTATGTTTTTTATTGGATACTGTTTTATTATGCCATCCTCA
GTAAAGAAATATatccctgcctcacagccccggtaaaactttttttctca
gtggggataaaaattcctattgaaatcccaatggggatagaaattccttt
gttccaaggttaaaaaatccagtggcaatggtttgaagtgcaatttttaa
acattaaatttcgagtggggatgaaataaaagttaatttccaagtggggc
tgaaattccagggtattttcccaccgggggcgaaatttttgccagtcttc
ccagtggggctgggctcccagcgggtctgtgacacatagAAAAGGTCAGA
TTCTCTGGATCTTAGTGTGATAAATACATGagaagaaaatatataaaata
agatTTATTTGAAGCGGATGCTATCAGCGTAGTAAATACAAAACAAATGC
ATCATATTAGCTACCAGCTAGACTGTCTAAAAGTTTATATGATGAATTTG
GGTCATTGGAAactgaagaaaataaaatattagaTGCCTGCTTAACTTGA
ACACAACTATCGTTCTACTAGTTTATAGATAGGTGTAATCTCTCATAgaa
tcaatttttgtttctctTATACAGGGGCGTCATTTTGTTTGTGATGACCA
CTGGAGAAATGCCATTCTGGTAAGTGAAAAAGACGAAAACACTTTATTTT
TGACTATCAATAATGTTGTAGTGTAGTTATTATCAGTCTTGGCTTCCGTG
CAAGAGGTCGgggttcaattcccactcggtactgtgattcacttggcaag
tgaatgtatcTAGGCCAGGGGAATTGAGTACCAtgctctgatacaagagt
gtggggaTATGTCTGACTCTGTGGTATGGTTGCTGATACTTGTCAGGTTC
GACCATGCGATGATGCACTGTTCTCTCGAGTCGTGCGAGTATAGTTACTT
TATACCAGCTGCTCGTAGTGTCGCGAGTACGAGTTGTCAGACTCAGGTAA
GCGCAgtgatttccctatcctagGATAGTGAATGATGTTCTGGATAGGGC
CTGCTCTGTACATCGGAAGAACTTTCTCATCCCTCTTGATAAAATACTGT
TCTCACTATAAAAGATATTCGTCGTAACGGAAGACTGTCGGAAACGACGA
GAAACTTTAAGTGTTGGAATAGTTAGAACTTCATATTCATTTTTAGTATA
TTAACTATatactagccgtatgcgcagaCGCTGCGTGTCCCATTCCAGTG
AATCACTACACATCTAAAAGATAGCCGCCgattgatgatttgattttgat
tttaagaaataaaggagaaagaagataacattgcattgtaatttttaacc
acaattaaataatggcttagcaaaagtatattttagatctttttagccat
cgtggttggacattcgagggtgactttgaaaaactttgaaaagttttgaa
agtgatagggagccgctattgtaaacagaaagttttaagaataagaattc
tttaaaatgagaaaaaaaaattgggaagatGGTTGATTTCaacccatcaa
gctccaaagacttggtgaatagaaaatagtatcttagggtctcaaagtta
gtctagtggtaggaaatctgcttaaggtgcaaaaagatTATGGTTCAACG
CCACGAAgtggaggctttgtagagctttgttagattttggaaaacctttt
acaaaacgttgtaaacacacacgtttaagcgtattaatatatagatgctT
AAGCACTAATAAACAAATCTTTATTTCTATTCTAGGTACCAAGCAAACGA
TACGCGTGATAATTTTGTCGCGCGGTTACGCAAAGGAATGAGCATTGAAC
ATGAACATATTCTCAAGCGTATTTCTCCAGGTaaggtattttgtaaatct
ttacTCCCTTCCtatgatttttaagaaagtttCTCACTCCTCTGATGAAA
AACCTCGCTACAATATCGATTTACGCGTGGCTTCGAACGTACAAACTTTT
GATGAGAAGATTTTTAAGAAGTTCTTCTTTGAGAGCTAACAAATAAACTT
CTTTTTGTTTCAGATCTCAAACGCTTGCTTGTACAAGTCTTGGAACCAGA
CGTTGCTAAACGCCTTCCATTAGAAGGTATAATATCTGATTTGTGGGTGA
CAGATCGAAGTCGAAGTCCTTTATTACCACTTCCAGCTGAAGTTATTCCA
CATGAAATACGACAAAaggtaaagtttgaaaaaacatttgtaCTGAATCC
TTACTGTACAGATATCTCGGCCAATTTTAGTTGAAAATCCAATGAAATCC
GAGGATTAACTTTTATTGCTCAGGAGGGGGAGGGGAGGATCAAAGAGCTG
TTTTGGAAACAGGAAAACAACCCTCAGTCTCACAAGTTTAAGGTAAATTT
TGGTATTGCCTTGAACTTTGATGCAAATGTCTCTAATGCTACAATATCTG
TTTTCtagtaattcatgatatgcaccactggagagtcttctgagaacttt
taaaattttccgcccaatacgtcacttaaacaatagaaaaagtgacgtat
tgggtggagcaaaaacagaaaagttgcataatttcgcgaagtcattgcag
tggtgcatatcatgcaTTGAAAGGTCCCTTGAAACTTAAAAGCTTATATA
TTTTCATTGTCAGATTATTGAACGTGTCGCTGAATTGTATTGTCGACCAG
TACCTGATACAATCAAAACATTGCAAGTGGAACACCAAGACGTCATGCAT
GCAACATTCGAAATCCTACTCCATAAAAGTCTGTGGTACCAACGCTCAAC
CAGTAACCATAGTAACAATACAGCAAAATTAAAGGACCAGAAACGAAACA
GGGGTACAtttcttttgggtatttctcCCTCTTTTAGTGTCCTTTTCCTG
CACTAAAGTTTAACAACCAAGTGTACTTGTATGTACTTAAACCAATgcaa
ttacaattacaaaaaaattgacaatggtAAATTTTGACCCTGTATCCTCG
ATGTTATAAAGCGTTGATAAGTGTTGTAATAGGGTCTACGCACGATTTTT
ATCGGCAACTTCTTTCATGCAAATGTTGAAATGTGAACAATCTGCTGTTG
TTTTAGgctgtttgttgttgttgccCCTACCTATGATATTAAGGGGTGAA
ATGACTTTCAAGTACAGAACTAAAAAGCTAGGTTATTATATAGGATAATT
ACTGTGAAAGTAAACCCGGTgtttttcaagtgaaaaaaaattgtcaataa
cAATCGGaaaaaaaGATCACAAGCAAAAGCCTTAACGCTGTAACGACACA
ATACCTTAACAATACTATCGTGTTCGAATAAAATACTGTTTAGCACTCCC
Aggttacccagctggcacacaacgttgtttcaacgttcatctgacgttat
atggacgttgttaacattagaaaaacgttgaaacaacgttgtgtgccagc
tgggtacgcTTGAAGTCTAAAATATCGTACTCACAGTataaataagaaga
aatttgaCTTTTACTCACagtataaaaaactttcttatcTTTTCAGGTAA
AACATCAGCTACATCTACAAGGTCATCCGCCAGATCCACGCCACTCCTGC
CCCAAGAGCAGAACGCCCTTGAAGACCGCCCACAAAATATGAACATAGTC
CGaatatcaaaatacaaaatgatgaaaagtcaTCATAAGGATGTCAGACC
ACCCAATAATTCACCCAAGAAATCTGAATACCGGGTACCTAGTCTAGATA
AGAGGACAGGCACCAGAGCAAGTAGT

Coding sequence (CDS) from alignment at sc0000269_pilon:373570..380945+

>XLOC_031738 ID=XLOC_031738|Name=XLOC_031738|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2688bp|location=Sequence derived from alignment at sc0000269_pilon:373570..380945+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaacaccatCAAACAGCATCAAAATGACTAAAGAATTTCTATTACA
AAAAATTGGTGGATATATGCTATGTGGGAAAACATTAGGGAAAGGATCGT
TCGGGCGAGTGGAATTAGCCATTCATTGTATTACCAACACCAAgaaaaaa
acaccatCAAACAGCATCAAAATGACTAAAGAATTTCTATTACAAAAAAT
TGGTGGATATATGCTATGTGGGAAAACATTAGGGAAAGGATCGTTCGGGC
GAGTGGAATTAGCCATTCATTGTATTACCAACACCAAggTCGCACTAAAG
ATCATCGACTTCAACGACATATCGGAGGAATACATCAAGAAAAACCTTCT
TCGTGAATCATCCATTTTAAAGTCACTTCGGCATCCAAATATCGTCAGAC
TTTATGAAGCTTTAGCGCATCATCAAACTTATTGCTTTGTTACAGAGTAT
TTGGAAGGAGGAGATTTATATACGTATATGCAGCGCCAAAGAGACAAAAA
ATTCTCCGAAAAGCAATCTAGATTATATTTCGTGCAACTCCTGCACGCCG
TTCAATATCTACACAGTAAAGGCATAATTCATAGgTCGCACTAAAGATCA
TCGACTTCAACGACATATCGGAGGAATACATCAAGAAAAACCTTCTTCGT
GAATCATCCATTTTAAAGTCACTTCGGCATCCAAATATCGTCAGACTTTA
TGAAGCTTTAGCGCATCATCAAACTTATTGCTTTGTTACAGAGTATTTGG
AAGGAGGAGATTTATATACGTATATGCAGCGCCAAAGAGACAAAAAATTC
TCCGAAAAGCAATCTAGATTATATTTCGTGCAACTCCTGCACGCCGTTCA
ATATCTACACAGTAAAGGCATAATTCATAGGGATTTAAAGCTCCAAAATA
TTTTGCTGACAAAGACTTTGAAAACCATAAAGATAGTAGGGATTTAAAGC
TCCAAAATATTTTGCTGACAAAGACTTTGAAAACCATAAAGATAGTAGAT
TTCGGTTTGAGTAATTATTGCGGCAAACACGATTTATTAAAGACCAGATG
CGGATCCGCACTGTACGCTGCACCAGAGTTCTTCGAGAAAGAAGTATCGT
ACGGCCCTTCCGTTGAAATATGGAGCTTATTTCGGTTTGAGTAATTATTG
CGGCAAACACGATTTATTAAAGACCAGATGCGGATCCGCACTGTACGCTG
CACCAGAGTTCTTCGAGAAAGAAGTATCGTACGGCCCTTCCGTTGAAATA
TGGAGCTTGGGCGTCATTTTGTTTGTGATGACCACTGGAGAAATGCCATT
CTGGGGCGTCATTTTGTTTGTGATGACCACTGGAGAAATGCCATTCTGGT
ACCAAGCAAACGATACGCGTGATAATTTTGTCGCGCGGTTACGCAAAGGA
ATGAGCATTGAACATGAACATATTCTCAAGCGTATTTCTCCAGGTACCAA
GCAAACGATACGCGTGATAATTTTGTCGCGCGGTTACGCAAAGGAATGAG
CATTGAACATGAACATATTCTCAAGCGTATTTCTCCAGATCTCAAACGCT
TGCTTGTACAAGTCTTGGAACCAGACGTTGCTAAACGCCTTCCATTAGAA
GGTATAATATCTGATTTGTGGGTGACAGATCGAAGTCGAAGTCCTTTATT
ACCACTTCCAGCTGAAGTTATTCCACATGAAATACGACAAAagATCTCAA
ACGCTTGCTTGTACAAGTCTTGGAACCAGACGTTGCTAAACGCCTTCCAT
TAGAAGGTATAATATCTGATTTGTGGGTGACAGATCGAAGTCGAAGTCCT
TTATTACCACTTCCAGCTGAAGTTATTCCACATGAAATACGACAAAagAT
TATTGAACGTGTCGCTGAATTGTATTGTCGACCAGTACCTGATACAATCA
AAACATTGCAAGTGGAACACCAAGACGTCATGCATGCAACATTCGAAATC
CTACTCCATAAAAGTCTGTGGTACCAACGCTCAACCAGTAACCATAGTAA
CAATACAGCAAAATTAAAGGACCAGAAACGAAACAGGGATTATTGAACGT
GTCGCTGAATTGTATTGTCGACCAGTACCTGATACAATCAAAACATTGCA
AGTGGAACACCAAGACGTCATGCATGCAACATTCGAAATCCTACTCCATA
AAAGTCTGTGGTACCAACGCTCAACCAGTAACCATAGTAACAATACAGCA
AAATTAAAGGACCAGAAACGAAACAGGGGTAAAACATCAGCTACATCTAC
AAGGTCATCCGCCAGATCCACGCCACTCCTGCCCCAAGAGCAGAACGCCC
TTGAAGACCGCCCACAAAATATGAACATAGTCCGaatatcaaaatacaaa
atgatgaaaagtcaTCATAAGGATGTCAGACCACCCAATAATTCACCCAA
GAAATCTGAATACCGGGTACCTAGTCTAGATAAGAGGACAGGCACCAGAG
CAAGTAGTGTAAAACATCAGCTACATCTACAAGGTCATCCGCCAGATCCA
CGCCACTCCTGCCCCAAGAGCAGAACGCCCTTGAAGACCGCCCACAAAAT
ATGAACATAGTCCGaatatcaaaatacaaaatgatgaaaagtcaTCATAA
GGATGTCAGACCACCCAATAATTCACCCAAGAAATCTGAATACCGGGTAC
CTAGTCTAGATAAGAGGACAGGCACCAGAGCAAGTAGT

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_031738	XLOC_031738-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000269_pilon	genome	sc0000269_pilon:373570..380945 +

Properties


Property Name	Value
Aaloc	1117-1344:7149
Aaloc	925-1113:6264
Aaloc	772-924:5666
Aaloc	676-768:5387
Aaloc	631-672:4226
Aaloc	502-627:3430
Aaloc	442-498:2599
Aaloc	145-438:943
Aaloc	1-144:1

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XLOC_031738 (mRNA) -