XLOC_031552 (mRNA) -

Overview
NameXLOC_031552
Unique NameXLOC_031552
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:965653..972326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031552 ID=XLOC_031552|Name=XLOC_031552|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6674bp|location=Sequence derived from alignment at sc0000112_pilon:965653..972326- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACTTCTGAAGAAATATTTAAATCGAAATCCTTATTCCACCGAAGT
TGCAGTGGTTATGGAAAGTCTAGAAGGTTGGTTGCATTTTATACGAAAAA
ATGTCGTTTACATAGATGCGTGCGGTCGGGTAGCTCGGTCGGTAAACCAT
TTGCCTTCCAATCCAAGGATTGTGGGTTCGATCCCCGGTATGTGCCACAA
ACTCAGCGAATGATATCTTAGATTGGGTAATCTAATCTAAGACCATGTTC
AGACGTTATGGTTTCGTATTGCCACTGGTATGGTATGTGTTACGGATAGG
AAGTGTTCATACTCATTTCGGAACGTTTCGGAGCAAGAAAACGGAGCAGT
TCCGTTCCGATGAAAATAGTGGAACGAAACCATGAATTGAATTCAGACTT
TGATCTTATTGGTGTTCTAGAAATTGGTTCGCCTAAAATTGATGATGATT
GTCTTTAATTTTCATAAATTGACTTTAATCTTATTATTAAGTAGATTGGC
TAGAGATTTTGTCAATTCTCAGGCTAATTCTTATACTGCTCAAATAATGA
TATAAAAAAATCTCTTTCACTTTTCAATGTTTTCTTTCTGACAAATCTAC
ATGCCTTTAGTATGCGTGACATTTGACTTCATGTATATAACCACACAAAA
GTCATCTGATTGATGAATTCATGCCATCAAGCTAGTAACACGGGCGCTCT
CAAAGGGGATAAGGTCTTTTTTAGTAGGCAATTTCATGGTCGAAATAAAT
CATGGGTTTTAAGTACTGACTGCAGCATAATTGCGGCTTCCTGTTGGTCA
GACGCAAAAACATCCAAAGTTTTAGACCAACAGAAAGTCGTTATCGAAAC
GCAATGGTCATGATTACTCGTGATTCCTTTCGACTGTGAAATGACACATG
TCTCTGAGTGTGTCAATGCGAAACTTTTATACATTTAAAGTCACCATTGG
AAAAGTCACTCTAAACTGGAACCCTCAATTTATTTTTATTTTTCTTCGCA
GCATCTACATCCACTTTGAATGAGAATCAAGAAAACGAACTCACTGATGA
CAGTCAAGTTTTACCAGGGTTTTGCCAATCGTTGGAATCTGTACTTCGAC
AAGGACTCAAAGGTAAAGAAAATGCTGGCACCCAACGTTCTTTTAACATA
CCGAACTTTTTTAATAGCATTTGAGGGAACTTTCTTTCCTTCTCTTTCTT
TATAGTTGGAAGTCTTGAACTGTTTCTCCATTTCTGTCTCCCGCTAATCC
TAGTTCCCCACTGTATAGTAATGTGGTGTTCGTCTCCTAGGACCCTGGAT
GGGAGGGCATCACATCATTACACTATTAAAGGAAACAAAAATCTGTCTCA
AAATAATATACAGGAGGACACAAAAAAGCTGTAACTTATTTGATAGAACC
CGAAGGAGCTTTATTTTCTTTCTTTTTTGGACCAGCATCTGGCCTTTCAT
TAGCCGCTGCCCGTGGTGCTGTATATCCGTTTTTGAAGAAGCAGCGCTTT
GCCAATTCAAGTTCATTTTGAAAGAAACGGCGCCTTATAACAATCAATTT
TCCTTCATGCTGCGCTTCGGCTTTTTGTTTTTTGGACCTACCTCCGGGTG
CCCCGGTGGAGGTCCTATGAATTAACCTCTGTCTGTTCGTTCGTTCGTTC
GTTTTATCTGGTACTCGATGTAGAAATTTTCTTCCGACACGCTAAAGCTC
TGAAGGTCGGGAAAATTATAAACATCTGGAACCTTTGGATTACGGAATTT
CTCCTGACCGCGTTCGTAAAATTTAGAAAGAGTCTGGGGACGGTAAAAAG
TTACTAGTGCCCCGAACTAAGAGTACACACGCAAAAAAAATTTCCCGTGC
GATTTCTAAATAGTGCTCCGAACTGAAAAATGTAAACAAAGCAGGACGGG
AACTAAAATATTATTGAGAGTGGCTCTAAATCCAAACCCAATTACAGTTC
AATTTATAGCAATAAAATGCGAATTCTTTGCTGCTACTGGAATAAATAAG
TTTGTCTCCTCACATCGAATGACAATTTCACCTATTCAAGATCTTTTACT
GCCTAAAAAAAGTAAACAAGCAATGTCACGAACCAAACAATTAGAAGAGA
GTGGCCATGAGCCAAATTTCCCTCAATCTAGTCCAATTTATACAGCAATA
TGTGAACTTTTTGCTATTTCCAAAATCACTAAGCTTGCCTCAACACACCA
AATGAAAATTACACCTGCACTAGATCTTTCACTACCTGAAATATGCATGT
CAGCCTCTAAAAATAGAGTTTGGCGAAACAAGCAAAGATGGTGTCCTATT
ACCAAAAAATAAAAGCTTTTTCCCCAAGATACTGATACAATATATGGGAA
CCTCCCTCCAACTTTGTTATTGGTGAAGGAGGATTCTGGCTTTTCCAAAT
AAACAACACACAGGTCATGATCAACAAGTTTGTTGATGTCGGTTGGGGTT
GGGCGGTCCGCTGCTCTGCATGGACAGATGGAGGGCGGTCGACAGGCTCT
AAAGGTCTAAATTGGAATGCAGCAGTTTAAAATTCCAGCATAAAAATTAT
TGGTAAAACTAAACAAAACATACCTGATATGCTTTCTTTGATTTGACCTT
TGAAAATATAACCAGTCAACCACCAAAAACAAATAAATAACAAAAGATAA
TAATCATGCAATGTCAAGCATTTTTAACTTGGTGCACTTACTAAGAAATT
ACACTAGGTACTAAATATAATACTGAAAAAGTAATGAAACTGTCAAGTTT
CAATAAATCCACCAAAATAAACCAAAAACAGCCAACAATCGAAGGTTTGA
ATATTTCTCAAGCCTTCTCAGGCAGCAGAGATTTTCTTGCTAAATTCAGT
CGGGTGCAACCGATAGTCAAGCAAAAAGTGTAAGGACGGCTAGACACGAC
TGTGATGCGGTACATCAAACGATGACTACTATAGGTCTCCGATGGTATAT
TGGTCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCCGCCAATACGCCATCG
GAATATCAGATAATCGTTCGTTCGTTCGTTCGTTCGTTCGTCCGTCCGTC
CGTCCGTTCGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGCTTTT
TCTGATTTTTTGCACAAAGATCCAAAATGGCAATGGCCAAAATGTGACGG
AGCCTGATTTTCGAAAAAAAATCATTTCCGGCCGAAAATGCCGGAAATAT
GCCGGAAAAACCGGTTTTTTGACATTTTCTCGAATTTTTATTTTTAGTTT
TTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAACATGGC
CGAGTTCGAATTTTGAGAAAAAATTTTTTCCGGTTGAAAATTCCGGAAAT
CGCCGTTTTTGCAGATTTTCATTGGATTTTTTTCTCATATTTCTATGTTT
TTCACACAAAAACATTATTGATAACAATGCTCACCATCAAGCATGATTCA
ATTGTCAATAAAACTGATTTTGCGACCAGAACTTTCTATTTATTTTTTCC
CTACAACCCTTCCCTCTCCCCCTACCATCAATCAATGATGAATTTCTTGC
GTTATGCATTTTCGCTAAACGCTATGTTTTCTGACTGATTTTTTTAAATT
TTTCTCCTTGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAG
CATCTAGCTTGTTATAGTTGTTTTAGTATCATTACGTACATTGAACGAAT
GGGGTGGTCGTTTGTTATAGTATAATTTGAAATTGTCATTCATTTCTTTT
GACAACTTTTTTTTGTTTTAGAATTTAAAATTTTGACACTTAGTCCTTTA
TTATGGGAACCTAAAATCTGTCTCAAAATTATCTACAGAAAAAACAAAAA
GGACATTTTTAGTTTAATAGCATTCGAAGGAACCTTTTTTTTCCCTCTTT
TCTTTATAGTTGGAAGTCTTGGTCTGATTGGTCTGTTGGATCGTGATTAT
TGGAGTGTCATCGATGGCTTATCGTCATCTTCAAGAGTAACTCTAAGGTA
ATGAATAATTTTGTTAGACTCCATGCTTTTTCAGTGATGACAACTCATTG
CTGTTTTCAGTCTTAAATTTTTCCGTCTCAGACGGATTTCCGTTCCAGTA
AAATATATAAAGATGCTCTTCCGTCTCAAAATTCTGCATAATTCACCAAA
GTTTCAAGAATCCAAGAGTTTGTGAGATTAACTTTCCGTCTAAGACAAAG
GCTTGCTTAGACTCTATGCTTGCATTTTCAGATAATGTTTCTTAGCCAAC
TCGCTACTGTTTTACTTCTACTTCTTGAAAAATAGATCTATAAAAAAACT
AAGATTTTCACCAAAGAAGCTCGACCACTCACCTTTGGGTCAATTTTTTT
CCGCACAACCACTATGCTACTGTTTTTTATCCCTTCAAACTGTTGTTTTT
TTATTGTGTAGACCTCCACCTTCAATCAACCATGCGATCACCGTTGTCAA
AGGATGCAAAAAGGTCAGCGTTGCAAATTTTTTAAGACTACTACATGAAA
AGATGAGCAGATCACCCGGTTGGGAAAAGAGCATTTCACACCTTGGAACT
TTTCCTACCGGAATGATTTACTCAATTTTTCCTGTTTATTTCGTGACAAG
GTGGCTTAAAAAGTTTACCTTTGCTGAAATAAGAATTAAATCATTCTTAA
TTTCTGCGAGAAATCTTCAATCTGATTGGTTAAAAAGAGTACAATATATC
TTGTATTTTACATGTATCGTAGTTAAAGTAATGAAAATTATTTTTTCAAA
ATTTTACATGTAAAAATATAAATTGACGAAAAGATGTTGTTGCATTGTAG
CGGTAGAAGCAATCTAACGTCACTTTGCTACAAAAGTGTCCTCCAACACA
AAAAGTGCATTTTTTGGGTCACCGATAAACCAGTTATCAGACATTTGCTC
GTACAATATGGAAATATTTCACTCGTTCCGGATTTTCCGTATATTTTCCT
TGCCTAAAGGCTCGGAAAATATTGTACGGAAAAATCTCGGAACTCGTAAA
ATATTTCTCATATTGTACTCGCAACTGTCCGATAACTATTACATAGTAGC
CATACAGCGTATATCGTTACGCTAGAATTGTTTTCCGCTCGACAAGGAAA
AAAAGCTATGTACCAATAAAGAAATATCTTTTCTTGCAGACGAGTACATC
ACAAGGGCGTGGTCGCCTTTTTATTCGCGTTGCATTAACGAAAGGCATTC
TGGTGCAAGCATTGGAAGCACTGCTGCAAAATCAAGAATATGTTAGGGTA
TGTTTCCTCAGGGAGAAAATTCGTCCAACAATCTTTTTTAAGATCAGTTC
GACTAAACTGGGAAAATTGTTAAAATCTTCAATAACATTTGTGGGGGCGG
TGACTCTCCCCAGTTGGCACAATCTAACGTTCTAATCCCCAATCTAACGT
TCACGACATCCATATAACGTTATATGAACGTTGAAACAACGTTGTGTGCC
AGCTGGGTCAGCACACAATTGACTCTATCTTATGCGGTCTTTCGTGGGAC
CAATTTTTTTTTCGAATTAGAGAAAGATTTGAGTCATAGAGGTTCGAATT
AGAGAGAGTTGACTGTAGGTTGTTTAATAGATATTTTACATATTGTAAGT
TGTTTTTTAGGTAATTGTTTTGCTAAATAAATAGTTTTTCAACGTTGGCC
GTCCTATTTTTCACCAGCTTTATCGGGAAAATAAAATTAAGTGAAGAAAT
ATTAGAGAAAGGAATAGATTTTTATGCTGAAAATCCGTCGATGATTTAGC
ATCGTGGTGAATTAGAGGAGGAACTTTAGTCGCTTCCTTTGTAAAACTTT
TAATCTCAATTCGCAAAAGCAAGAGTGCTTAACCACACAGAGTTGATTAC
TGCAGCAACATAGAAAAATATCATGTAGCCAAAACACGAATCCTATGAAA
TAGGTTAATAAATACGGTATCTATCTTAATTATTTTATAGTATTGGTATA
AAGATGCTTCACCATTGGTCGATTACCGTAGAAAAGGTAGGTGCGATATT
ATCTCCTTTGGGTTATATCAAGCCAGCACAAGACTTTTTTACGGAGAAAC
GTTTATTCCACTCACTGAACTTCTTATAAACCATCTTAGAGAGAGAAGAT
TACCCAAACTATCTTACTGATTCGTTAAGGTGGTGGTGACCGGAGATTGA
ACACAGTAATACTCTATCTAATTACTGAGATACCCACTCATGTTCTAATT
GACATGCCACCAAAAGTATTCCCCTGGAATTCCAGTCACTTTTTGGCTCA
AACCTCTTGAGTTTTAACATCTATTGCATTCTGGTTATGCCCTTTGTAAT
GATAGAAATGTTCCCTTTTCGCTGTGACGGTGTTGGAGTGTTTTTCCGCA
GATGCTTAAGGGCTATTTAGACTAAACAATATATTGACGAACAATATTCG
ACAATATGGTTTGCGGACCGTAATGTACGAAGTAAACAACTGGTACTTTA
TTATAAAAAGGAATTTTCTTTCTGTAAACAATCCCCCTTTATTGTTGGAA
TATTGCAAATCGAGCTGACAATATTGCCGACATTCAGCAATATATCATCA
ATATATTGTCTGACAATATATTGTGTAGTGTATGTAGCCCTTTATTCTTT
ATTTTGATCTTTCAGACTTGGTTATGGGTATATTAAAATCGTTGAAAAAG
AGGAAGTACAACCTAGATGTCAAT

Coding sequence (CDS) from alignment at sc0000112_pilon:965653..972326-

>XLOC_031552 ID=XLOC_031552|Name=XLOC_031552|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000112_pilon:965653..972326- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACTTCTGAAGAAATATTTAAATCGAAATCCTTATTCCACCGAAGT
TGCAGTGGTTATGGAAAGTCTAGAAGATGACACTTCTGAAGAAATATTTA
AATCGAAATCCTTATTCCACCGAAGTTGCAGTGGTTATGGAAAGTCTAGA
AGCATCTACATCCACTTTGAATGAGAATCAAGAAAACGAACTCACTGATG
ACAGTCAAGTTTTACCAGGGTTTTGCCAATCGTTGGAATCTGTACTTCGA
CAAGGACTCAAAGCATCTACATCCACTTTGAATGAGAATCAAGAAAACGA
ACTCACTGATGACAGTCAAGTTTTACCAGGGTTTTGCCAATCGTTGGAAT
CTGTACTTCGACAAGGACTCAAAGTTGGAAGTCTTGGTCTGATTGGTCTG
TTGGATCGTGATTATTGGAGTGTCATCGATGGCTTATCGTCATCTTCAAG
AGTAACTCTAAGTTGGAAGTCTTGGTCTGATTGGTCTGTTGGATCGTGAT
TATTGGAGTGTCATCGATGGCTTATCGTCATCTTCAAGAGTAACTCTAAG
ACCTCCACCTTCAATCAACCATGCGATCACCGTTGTCAAAGGATGCAAAA
AGACCTCCACCTTCAATCAACCATGCGATCACCGTTGTCAAAGGATGCAA
AAAGACGAGTACATCACAAGGGCGTGGTCGCCTTTTTATTCGCGTTGCAT
TAACGAAAGGCATTCTGGTGCAAGCATTGGAAGCACTGCTGCAAAATCAA
GAATATGTTAGGACGAGTACATCACAAGGGCGTGGTCGCCTTTTTATTCG
CGTTGCATTAACGAAAGGCATTCTGGTGCAAGCATTGGAAGCACTGCTGC
AAAATCAAGAATATGTTAGGTATTGGTATAAAGATGCTTCACCATTGGTC
GATTACCGTAGAAAAGTATTGGTATAAAGATGCTTCACCATTGGTCGATT
ACCGTAGAAAAGACTTGGTTATGGGTATATTAAAATCGTTGAAAAAGAGG
AAGTACAACCTAGATGTCAATACTTGGTTATGGGTATATTAAAATCGTTG
AAAAAGAGGAAGTACAACCTAGATGTCAAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_031552XLOC_031552-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000112_pilongenomesc0000112_pilon:965653..972326 -
Properties
Property NameValue
Aaloc484-540:58
Aaloc436-480:735
Aaloc328-435:1536
Aaloc277-327:2263
Aaloc190-273:2764
Aaloc79-186:5672
Aaloc1-75:6675