XLOC_031513 (mRNA) -

Overview


Name	XLOC_031513
Unique Name	XLOC_031513
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000019_pilon:1483852..1490730-
coding sequence from alignment at sc0000019_pilon:1483852..1490730-

mRNA from alignment at sc0000019_pilon:1483852..1490730-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_031513 ID=XLOC_031513|Name=XLOC_031513|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6879bp|location=Sequence derived from alignment at sc0000019_pilon:1483852..1490730- (Clytia hemisphaerica_ch_hm2_pilon)
TTACTTAATTTCCTAGATCTGGAACCAAGTAAGGCGGCATTTTACGCAAA
CAGATCGGCTGCATTAATGATGGTGGAAGAGTTCAACAAAGCACTTGAAG
ATGCTCGAAAAGCCTTCAATTTGGATAACAAGTTTATCAAAGCATACTTA
AGAGCAGCCAAGTGTTATATTGCCACTGGACAGACTAATAATGCAATGAT
GACACTACAAAAGGCCAAAACGCTTGAACCAACCAATAAATCAGTATTGA
GTGAGGTCAGTGAGTAAGATCATACTCTCGGGTACCTAATAGCCAGGGGG
TTTGGAATAAGCAAGGGGGTTGGAAAAAAATCTCAAAAATTAATTAGCGG
GATTAGCGGGCCCGACCCCGGCTATTAGGTAACCAAGAGTACCTGATCAA
CTTTAAAGTTATACTTATTCTGGTGTCTTATTTCTGGTGTCTTGAATTAT
CTTAAACTAACTGCCTTCAGGACAATTGTTTTGGTTTTGATTTGCCAATT
AAAATGAAATTCACTGCCCTGTTCTTTACTTATAGCTGAAAAATGTTCAA
ATAATGGCGGATTACGAAAACCAAAGTGCGAATGCTTTTGAAATCAAGGA
TTACCGTAAAGTAAACTTTGTGATCTCTTTAAAATCTTTTTTTCTCGGAG
TGTACTGAAGTGAGACCTACTCCCGCAATCGAAGCCTTCCAAAGGATCAT
GTTTTGATAGCTATGTACCATAAGGTTAGGCTCCCCCTACCCATTGGATC
CTTCTCTTTTATTGTGTTCGTTTTTTATGCATTTCTTCTTATGTTGTTTA
GGATTTAGAAAATTTTTCACCGCCGTTCACATTATGTAAAACTCAACATT
CCTCTACAAAACTACGAGTCAAATTATTATATGCCGTTTTTTTCATTTTT
ATTCAGAAAATAAGGGCAAATAATGATAAAGACCTATGACGGGTCCCTAA
GTTTTGTTTTCTGGTCATGGAGGGGCTATGGCTGATGGGGGGATTTAAAC
TTTAGATGAGGGGATTTATTATTATTTCTTTTCAGATCGAGTTTTGCATG
CGTAAGCTTTTGGAATATGCACCAAGTTGTTTGGGCTACAAAGGATTACA
GGCAGAGTGTATGGCCATGACTGGAAAGTATAGTGATGCTCAAATCCTTG
CTAAGTAAGTATCTATCTAAGTATCATGACCAAAACAAAACATGGTGTGG
TGTTTATTCGTGTGTATTTTACATGTGTTGTTCAATCAATCGCCAAAAGT
GATCCCCAGTACTGAGTGTCGGAAGTATAGGTGTGTTAATATCCATTTTT
TTAGTCACCTTTTTGGTTTGATTGAAATCCAAACTTACAAACAATGGAAG
GATATGTATCATCATTGATTATCACATTAATATTTTAGTGACATTTTGCG
CAAAGATCAGCACCATTCCGAGGCTCTATATGTTCGTGGCTTATGCTTGT
ATTATCAGGTAACACAGAAAACTTATAAGTAATTACTTTATTTTTGGCTA
TTATGAGCTGTTAAGGAGTGGGGACACGAGAGATTCTTTTGAGCTCCATT
CCAACAACTTCAGTTTTTCTTGCGTCGCCACATAGCAACATATGAAGCTG
CACGCATCCCTTCTGATATGTTTTGATATATAGGGGCTGGTAATTGTGTA
TAAAATTCCTGTCTGAGAGTTACCCCAAATTTGGGTTAACCTGTTTCAAC
TTTTTTATAAAAAGGTTTACAGTAGTTTAGAAATTCAATGATTGTATGAA
CCTCTAGTCATAAAAATTTTAAATTCAAATTTAATGAAACATTATCATAA
AAATCTCGTCTCTGCACTGCTTTAGAATTTTTCATGATTAGCTAGTACTT
GGCTTTGAGAAAAAGATAACACTTGTTATGATGGAATCGACGCTTTGGAT
AGCGCAATTCGATTCATGACTTTTTAAATTTGGTTCAATGAAAAAGAACT
GTTCAAATAAATTCAAGTGATGTATTCTAAAACAATGACTTTAATTGGAA
TCACTGATCGAAGTGAAATGAAGTTGATTACCGGGTAACCAACAAAAAGT
ATTTGTACAATTATGGCTAAATACATGGGTAAATTTAGTATCCATAACTC
ATCATACTCATCATATTTCTGGTTACCCGGTAATTAACTTCATTTTTCTC
GCGCAGTTCTTTGTTTAGTAAATTTTCACTTTGGTTTTTCAGGATCAAAC
AGAGAGAGCTTACAAATTGTTTCAACAACTGCTTAGAACTGCTCCGGACT
TCAAAAAAGCTAGAGAAGCTTACAAGGTACTGCTATTTAAGTTTTCCTCT
CACCCGTTCAATCATTTTATGAGAGCGATAATACGCTCTTCCTCAGTTAC
TTTCTTTGATTGCTGATTTATTGCTTCAACTTCTTTACAAACAGGGTAAA
ACTTATATATTGCCAAAGTTCAATTCCCCTCAGGGGGGGGGGGTCAAGCA
GTTAATACACGACACCTATGACAATTAGTACCGTGGTGGGTCCTTTTCTG
AAATTTGCAAATTGCAGTTAATACACCAGTGTATTAACTGTCAAAAGGGG
TGGTGTTAAGACAATTTTAGAACTCAAAAAGTGTATTAACTGCCTACCAT
AGCTTGGCACTTTCTATAAATTTTGAAACTAAGCAACCATGCAACTGGAA
AACCTCAAAATCTTTTTCTGCTTACTCAAATTTTAACTGTTGCATTGCTT
AGGCAACTTTCTGGCAAGGGATTTGCACCCCGACTTACAAAAACTTAATT
TAAATTTTCTAATGACATAAATCTGTGACATAAGTAGTCTCAAAACAGTT
AAAATCCCTTGTATTGCATCAAATTAACGGGAAAATAAGCGGTGGACCTG
CATGGGACGGTTTGTCGGCCGCTGCAAACTCACTTTGGGGGTGGTGTATA
TATTTAATGGGTCAAAAACAGTTAATACACAGTGTACTAAGTGTCAAGGG
GTGGCGGTCCTTTTGAAAAATTCATTTGGTAGTGTTGTGTATTAACTGCT
TGTCCCTCCTTACTCTTTATTTCCACTCAATCTGATGAAAGAGAAATTAG
TTGCAGTACTTTCAATTGATTCTTAAACTTTTAATTTCAGAAAGCAAAGA
ATTTGGAAGCAACGAAAGAGGAAGGAAACAAAGCTTTCCGAGGTGGAGAC
TACCAGGAAGCATTGAGGCTGTACACAAAAGCTTTAGAGATCGACCCTAT
TAACAAATCTACAAACTCCAAATTATATTGCAACAGAGCCACAGTTAATT
TCAAACTAAAAAAAATGGAAGATTCTGTAAAGGATTGTACAAGTGCCATA
GAATTGGATCCTTCCTATCTAAAAGCTTACTTAAGGCGTGCCAAAAGGTA
AGCTTGATCACTTCTCTACTTCTTTCGATTGAAAAACTGATGTAATTTAA
AAGCACAGATCATTTAGCATCATTATTGCTTTCATCTTCTGTATCTGTAG
AGTTGAGGTATAGTTAGAGTCCGAAATTATATTCAATTTAGATTAACGTG
ACAAAACCTATGGGTATGACTCGGATTTGCGCATAGGTGAAAATTGTTGG
TCTTTTGATCGTCAATTGTTCGACTTGAATATGCGATTTCTGGGTACATA
TTTTAACTATTATAAGGCCAAAACACTTTAAGTTGCTGGATCTAGGAAAT
GTAGAGCAGAGATTTTACTTCTAGTAAAAACAATATCAAAAAAGTGACGT
CACGCGAAACTAAAGATCTAAAGTAAATTGATTTCGTCCTTCTTGACCAA
TCAGATACGTGTAGTTATGTAAGTTTAACAATTGAAATAATAATTCTGAA
AAATTGATCTCGCGTACACAGTAAGATTTCTGAACAAAGCAGAGTCCTAT
CGGTTGATAAGATAGCTCTTTTCATTATTTTCAGTTACATGGACCAGGAA
TTATACGAAGAAGCAGTGCGTGATTATGAAAAAATTACCAAAATGGATCA
CAACCATGGTATACAATTTATTTTCTCAGCTACTGACATTTTTTTCGTGC
TGTTTTTTCAAACGTTCAATTAGTTTGAACTCTTACTTCTCCTCAACCAA
CAAATGGTTTATCATTGACTTTTCTAAAACGTTTTCTTTCAAATTGTTAT
GTTTTGCAGAGTATAGGCGTCTATTAAAAGAAGCGAAACTGGAGTTGAAA
AAGAGTAAACGAAAAGACTATTACAAAATTCTTGGCGTTTCAAAAACAGC
TTCTGAACAAGAAATGAAAAAGGCGTATCGAAAAGAAGCCCTCAAACATC
ACCCAGGTATCTAAATATATGTTCTTATTATGGAGAATTGATAGGCGGCT
CGCTGAAGGATCATTCAGGAGTTGCAATTAATGGTTGAAATTTAGTGAAG
ATGCACATTGACACGATAATAATCACAACCTCGTCCTCATGCCTATTCTC
GTTTTTTGATTGACGAGGAGGAGATTACTCCTTGACTACTAAAATTTTTT
ATCGTTTGTAGCATTCTTGCGATCAAGCAATGTTTGTTTTAACATTTCGT
ACCATTACATTAGAGTAACAAATCTCGTTATTTTGATGTTCTTATAAGAG
AAACAGAAAAGAATAGAAATATTTAACGATTGAATGATGTTTTTTTATTA
TACAAAAAATATATTTTCTTTTGTTTTGCTCTGTCAAAAGATATATTGTT
ACAAGTAAAACAGTTTTCAAGAGACTCAGTTCAGTTATGTTGTATCAATC
GGGTTTGTACAACCTTTCGAGATCATGTAACCTTTTTGAGGGAACGAGAC
CGGGGCTAAAACTTACCAGATAGCATCCAAATATAAATGCCGTTTATGTT
TGCTCTAGGATCGAGGGTGTAAAAATCATACTCATTGAAGTCGATCAGGG
GTAACTCTTTTGTGGTATTCAAAACATATGTCTCTGAGGGAGTAAATGAC
GATATGGTGCCAATAAGCTAATTGTAAGGGAATCAAAGCTTTACTCGCCG
CTTCACTAAGAACCTTCACTTCTTCTGTAGATCGACATTCCGATGCAGAT
GAAGAGAAAAAGAAATCTGAAGAACAACTCTTCAAAGATGTAAGTATCGT
GCCAACTTAAAATAGTTCCATAAGGACAGCTATCGCTTTAACCTTTCGAG
CATCTTTGCAAGGAAATTTCGGCATCATTGATGACATCATTGCCACCTTA
TGACGTCATCGTTCTTTGAAATTACCGAAAATAGAACCTCTAACATTTTT
CACTTTCTTATTTTTTCTCAAATTCCGTGCGGCCGCTCCACGTGGCGTTT
ATTATCATATTTCTTTTATTTTTGGAACACATGAGCATTTTTTACCAACT
ACTGGTATTGTGTATTTGACAGACTGGGTAAAAGTTGGTCCGGCCCTTTT
TGCCTAAATCAGGCCTAGGTTTCTGTATCTAGGGATTGGAAAATGCCATT
GACTTTTTTGTCAGGTGTTGATAATGCAAGCTTACAACCGAAATTTCCGA
TTTTGTAAAATTCCAAATTCCAGATGATTTTAGCAAAATTCTCATTCTGG
CATGTAAAATACCAATCAGACAGGTGGCCGAACCAAATCATCTCCGATTA
TGCATAGATACTGAAATTTTCACCAGTCAACCAGTTCAAGATTATAGCAC
TATCAATCTTGAGTTTTAAGGTGGGAGCTGCGAGCCCCCCTCCCCAAGGT
TCCCCTACCCTAGTAAAAAATAGGAAGATGCTCGCGGGGTTAATAATTGG
TTCGATACTGTTAATCGGGTTTAATTGGGCTGATAATCATGAAATAATTA
TTTCACCCAGGTAAGTGAGGCATATAACATATTATCGGACCAACAAAAAA
GGGCACGTTACGATAGCGGACAGGACCTCGACGATCACGGAATGGATTTT
GGTAAGAGATTAATATTTTCACTGTAAATCTTCTTTACTGTATTTCAACA
ATATCGCACGGGTATTTGGGAAAGTAGGGAAGGCTATTTTTTAGAATTTT
GAATTACCTCAACCTTAGTTGAATGGTATCTTTTTCTTTCAAGAGAGCAC
GCTTACATTCCTGTTCCTCAATCTAGTACCAAAAAGTAGGTATTAGCGAG
ACACATAATGAAATACTCCTACTTGGATACTGTAAATAATACAACTTAAC
CTTTTCACTTTATTTCTCACAGACTTTGACCCGAACATTATTTTCCAATC
GTTCTTCGGCGGTGGCGGTGGCGGTGGTTTCGGCGGAGGCGGCTTTCCTT
CGCATGGAAGACAACGAGGTAAGATTAAACAACTATCTTGTATCCCGTTT
GTAAACTAACCAGTTTCGTGACTGAAAGATTCTGAAAAGGAAACTTGGGT
GCCCAATAATAGTTAAAAAAAATCAGTAACGTTTATCAAAAAAATAATGA
ATTTATGAACCTTCACCCGACCTAGGAAAATAATTACCATTTTGTACAAA
GTGAAATTCAGTTCGGTGAGTGCTTTTGTTTTGACTTTTTAGAAAATTTT
AAATTGATGTGTCTACTCTTACCCTATTTTTCTGTGAACTCCTTTTTCTA
AAACTTAATTAAACTCAAGATATTCCTCTATTCCAAACTCTTCACTTTCT
AATTAGATTTAAAAAAGTCAAATATGCCTAACAACGGATTGTTAACAACC
CTTTGTTAGGTACGAGAGGGTACATTAGAAGGAAAGAAGTTAAAAAGGCA
CTTATCAAAATCTTCGTCAAATATCTTTATTTTCGTTTTTTTCTCTTCAA
AACTCTGACTTTCGTAGCATCTTGTAACGAGTTCCAAATATAGAAATATA
ATTAAAGGGGTGTAGTAAGGCTTGCACGTGGGACAATAAAAGAAGCGTAA
TTGAACGAGATTTTACTAATTGTCATTAGGTGGAGGAGGTGGTGGCTACC
CTGGCGGATTCACTTTTTCGTTTGGCTAA

Coding sequence (CDS) from alignment at sc0000019_pilon:1483852..1490730-

>XLOC_031513 ID=XLOC_031513|Name=XLOC_031513|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2754bp|location=Sequence derived from alignment at sc0000019_pilon:1483852..1490730- (Clytia hemisphaerica_ch_hm2_pilon)
TTACTTAATTTCCTAGATCTGGAACCAAGTAAGGCGGCATTTTACGCAAA
CAGATCGGCTGCATTAATGATGGTGGAAGAGTTCAACAAAGCACTTGAAG
ATGCTCGAAAAGCCTTCAATTTGGATAACAAGTTTATCAAAGCATACTTA
AGAGCAGCCAAGTGTTATATTGCCACTGGACAGACTAATAATGCAATGAT
GACACTACAAAAGGCCAAAACGCTTGAACCAACCAATAAATCAGTATTGA
GTGAGTTACTTAATTTCCTAGATCTGGAACCAAGTAAGGCGGCATTTTAC
GCAAACAGATCGGCTGCATTAATGATGGTGGAAGAGTTCAACAAAGCACT
TGAAGATGCTCGAAAAGCCTTCAATTTGGATAACAAGTTTATCAAAGCAT
ACTTAAGAGCAGCCAAGTGTTATATTGCCACTGGACAGACTAATAATGCA
ATGATGACACTACAAAAGGCCAAAACGCTTGAACCAACCAATAAATCAGT
ATTGAGTGAGCTGAAAAATGTTCAAATAATGGCGGATTACGAAAACCAAA
GTGCGAATGCTTTTGAAATCAAGGATTACCGTAAACTGAAAAATGTTCAA
ATAATGGCGGATTACGAAAACCAAAGTGCGAATGCTTTTGAAATCAAGGA
TTACCGTAAAATCGAGTTTTGCATGCGTAAGCTTTTGGAATATGCACCAA
GTTGTTTGGGCTACAAAGGATTACAGGCAGAGTGTATGGCCATGACTGGA
AAGTATAGTGATGCTCAAATCCTTGCTAAATCGAGTTTTGCATGCGTAAG
CTTTTGGAATATGCACCAAGTTGTTTGGGCTACAAAGGATTACAGGCAGA
GTGTATGGCCATGACTGGAAAGTATAGTGATGCTCAAATCCTTGCTAATG
ACATTTTGCGCAAAGATCAGCACCATTCCGAGGCTCTATATGTTCGTGGC
TTATGCTTGTATTATCAGTGACATTTTGCGCAAAGATCAGCACCATTCCG
AGGCTCTATATGTTCGTGGCTTATGCTTGTATTATCAGGATCAAACAGAG
AGAGCTTACAAATTGTTTCAACAACTGCTTAGAACTGCTCCGGACTTCAA
AAAAGCTAGAGAAGCTTACAAGGATCAAACAGAGAGAGCTTACAAATTGT
TTCAACAACTGCTTAGAACTGCTCCGGACTTCAAAAAAGCTAGAGAAGCT
TACAAGAAAGCAAAGAATTTGGAAGCAACGAAAGAGGAAGGAAACAAAGC
TTTCCGAGGTGGAGACTACCAGGAAGCATTGAGGCTGTACACAAAAGCTT
TAGAGATCGACCCTATTAACAAATCTACAAACTCCAAATTATATTGCAAC
AGAGCCACAGTTAATTTCAAACTAAAAAAAATGGAAGATTCTGTAAAGGA
TTGTACAAGTGCCATAGAATTGGATCCTTCCTATCTAAAAGCTTACTTAA
GGCGTGCCAAAAGAAAGCAAAGAATTTGGAAGCAACGAAAGAGGAAGGAA
ACAAAGCTTTCCGAGGTGGAGACTACCAGGAAGCATTGAGGCTGTACACA
AAAGCTTTAGAGATCGACCCTATTAACAAATCTACAAACTCCAAATTATA
TTGCAACAGAGCCACAGTTAATTTCAAACTAAAAAAAATGGAAGATTCTG
TAAAGGATTGTACAAGTGCCATAGAATTGGATCCTTCCTATCTAAAAGCT
TACTTAAGGCGTGCCAAAAGTTACATGGACCAGGAATTATACGAAGAAGC
AGTGCGTGATTATGAAAAAATTACCAAAATGGATCACAACCATGTTACAT
GGACCAGGAATTATACGAAGAAGCAGTGCGTGATTATGAAAAAATTACCA
AAATGGATCACAACCATGAGTATAGGCGTCTATTAAAAGAAGCGAAACTG
GAGTTGAAAAAGAGTAAACGAAAAGACTATTACAAAATTCTTGGCGTTTC
AAAAACAGCTTCTGAACAAGAAATGAAAAAGGCGTATCGAAAAGAAGCCC
TCAAACATCACCCAGAGTATAGGCGTCTATTAAAAGAAGCGAAACTGGAG
TTGAAAAAGAGTAAACGAAAAGACTATTACAAAATTCTTGGCGTTTCAAA
AACAGCTTCTGAACAAGAAATGAAAAAGGCGTATCGAAAAGAAGCCCTCA
AACATCACCCAGATCGACATTCCGATGCAGATGAAGAGAAAAAGAAATCT
GAAGAACAACTCTTCAAAGATATCGACATTCCGATGCAGATGAAGAGAAA
AAGAAATCTGAAGAACAACTCTTCAAAGATGTAAGTGAGGCATATAACAT
ATTATCGGACCAACAAAAAAGGGCACGTTACGATAGCGGACAGGACCTCG
ACGATCACGGAATGGATTTTGGTAAGTGAGGCATATAACATATTATCGGA
CCAACAAAAAAGGGCACGTTACGATAGCGGACAGGACCTCGACGATCACG
GAATGGATTTTGACTTTGACCCGAACATTATTTTCCAATCGTTCTTCGGC
GGTGGCGGTGGCGGTGGTTTCGGCGGAGGCGGCTTTCCTTCGCATGGAAG
ACAACGAGACTTTGACCCGAACATTATTTTCCAATCGTTCTTCGGCGGTG
GCGGTGGCGGTGGTTTCGGCGGAGGCGGCTTTCCTTCGCATGGAAGACAA
CGAGGTGGAGGAGGTGGTGGCTACCCTGGCGGATTCACTTTTTCGTTTGG
CTAAGTGGAGGAGGTGGTGGCTACCCTGGCGGATTCACTTTTTCGTTTGG
CTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_031513	XLOC_031513-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000019_pilon	genome	sc0000019_pilon:1483852..1490730 -

Properties


Property Name	Value
Aaloc	1330-1377:49
Aaloc	1234-1326:756
Aaloc	1141-1230:1120
Aaloc	1084-1140:1898
Aaloc	937-1080:2769
Aaloc	862-933:2995
Aaloc	604-858:3790
Aaloc	520-603:4688
Aaloc	451-519:5491
Aaloc	331-447:5845
Aaloc	256-330:6345
Aaloc	1-255:6880

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XLOC_031513 (mRNA) -