XLOC_030555 (mRNA) -

Overview


Name	XLOC_030555
Unique Name	XLOC_030555
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000261_pilon:374423..378336-
coding sequence from alignment at sc0000261_pilon:374423..378336-

mRNA from alignment at sc0000261_pilon:374423..378336-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_030555 ID=XLOC_030555|Name=XLOC_030555|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3914bp|location=Sequence derived from alignment at sc0000261_pilon:374423..378336- (Clytia hemisphaerica_ch_hm2_pilon)
ACAGAAGTTTTGGATGATACTGATTCGTGTGACGAATTTGAAGATACCCC
TCAAAACGAATCAATTATTTTTGATGATGCAAACGAAAAAATCATTATTA
TGCTTATGTACCAACTTTTTGCCCTTCTAACAACATACTCAATTTTAGAC
AATGTTATGGGGATCTTGTTGAAATTGTTCCACTCTTTTTTGACACAATT
GAAGTCGCATGACGGTGTTGATGATAAATTGAAAAGGACAATTGAGTGGT
TTCCTTCAAGCCTCTTCCTTGCTAAAAAGAAGATTAACTTAGAAAATAAT
TCTTTCGTTAAGTATGTTAGCTGTGGAAAATGCCACTCTATATACAAGTC
AGAAGACTGCTATTACGAAAAAGATGGTAAAAGAGAAAGTCACTGCTGTA
CCCACGTTCCATATCCTGACCATCCTCAAGCACGCTTTAGAGAGCCATGT
GGCGAAACACTGATGAAATCTGTTTCAAGTGGTGATGGTAAAAAGAATTA
CCTTCATCCAAAAAGGTTATATTGTTATCAACCCTTAAAACAGTCTCTAC
AGAACCTGATTAGTAGGAATGATCTTAGAAAAAAACTTTTGGGTGGCCCA
TCAAAAGGTCCCGAAGGCGTTTTGTTTGACACCATTGATGGCAAGTTTTG
GAAAGAATTTAAAGACAATAATGGGGAAATTTACTTCAAAGACCCTCGAA
ACCTTGGAGCCATTTTAAATATAGACTGGTTTCAACCATTTGACGGTGTG
GAGTATAGCTGTGGAGTCATATATATGGCACTCCTTAATCTTCCAAGAGA
GTTGAGGTTTCGATGGGAGAACATAACAACTGTTGGCATCATCCCTGGCC
CAAACGAACCTTCACTCAATGTCAACAGTTATGTCAAACCTCTTGTCGAC
GATTTGCTGACGCTTTGGCAAGGAGATATGTTTGAGGAGAAAGAATCTAG
AGCTATGTACAAGTTCGCTCTTTGTTGTGTATCTTCTGACCTTCCAGCTA
CAAGAAAATTATGTGGTTTTGTTTCATACAATGCAAAACAAGGTATAAAT
CATAGAAATTTAGTATGCGCATTTGCTTTTGTTTTATCCATTTCATTTTG
CGGAAAGGAGTCTGACCCCCCTTGTTAAATGATCTCCCCTTCTTGACATC
CCCAACTTTTTAAAATGTCTATCCCCAAGGGTTTTGTGCTAAATTTTCAG
AAATACATAGTGTATAGTGCGATCTGCTAATCCCCTTCTCGCTGCTACCC
CCTTCTTAAAATCAATCCTCCGTTTTTTCTCTATCTATTTGTTTATGGTA
AAAGGGAGGGAAACAGCAAAGAAAAATGAAGTCTGGTAAATATAATACCA
CTTTTTCAGGGAAATAAAAGTAACAGTGCTGGAAAATAATCTACAATATA
TGGGGCTTACTTAAACGATCCCCCTTCCTTGCTACCCCCCTTTTTAATTA
AATTTTCTGAAGGTGTTATCCCCCCTTAAGAAAGGGTGATTCGAACTATG
CATTTAAATTTTTTATATGCTCATGTTAGTGTTGAAATCTTTTTGATTTA
TTATAAACAAATATTGTAAAACTTCAATCGATTTTTAATAAAAGCGTCAT
CAATTATAGGCTGGGGTTAGGGTTTATGGGTAATGGTTTTTCTTGTGGTC
CAAGTATTGAAATCATAAAATCATTTTAAACTGGTGTGCTTTCTACTGGA
CCTCATTAACATTCATGCGTAATAGTAATACAACGTTGACGCATATAAAT
CATTTTTACTCGCGTACTCAACCATCACTGGATCACTATTAAGCTGATTT
TAAATCTTAAATTGTTAGAGAACATCTCCACAGCTAGAATGAAGCTACGT
TTTTCTCTTTTCTTAATATTGTAGGTTGTAGTAAATGTTTTAAACAATTC
GAACACGATGTTCCTGTTGGAACTACTAAAACTGACTATTCTGGCTTCGA
CGAAGAGAACTGGACTGAGAGGGACCCTAAAGAACATGTCAGGTTGGCGT
TCAAACACAAAGCGGTGAAAACACTAGCTGAAGCAAAAGAAACAGAACGT
GATTATGGTGTTAGATTTTCTGAATTGTGTCGTCTACCGTATTACGATCC
GGTTCGTTGTCACCTCATCGATCCAATGCATTGTCTCCTCCTAGGTGTAG
CCAAGAACACGTTGACAATCTGGATAAAAGTTAGTATAATTCTCATTACT
TCCTTTACTATAAGGACAAGCAACTTGTCTTGCAGGTTTGAAATTGCCCA
GTATTGGTCTCATATTTAAAACAGCTTTCCTCATCACCACCATTTCAAGT
TGATTTATTCATAAATTTACGCGGAACAAACAATTTTACAGTTTTCCAGG
GCTGGAAATGGAGTTTTCACACCCGTGGGATCTGATGACTTTTTCCTGGG
AATGAGACAAGGGTGCTATCAATGTTTCTAATTCAGGAATGAGACAAGGG
TGTGGTCAATGTTTCTCATTCAGGAATGAGACAAGGGTGTATCAATGTTT
CTCATTCAGGAATGAGACAAGGGTGTTTTAATGATTCTCATTCAAGTGAG
ACAAGGGTGTGGTCAATGTTTCTGATTTAGGAGACATGGGTGCTATCGAT
ATTAGGTACCCGCAAGAACCTCTTAAGAACATTTAAGCCTAAAGATAAAA
ATAATAACAACTAAGCCTGAGCCAAAATTTAATGGTTCTAATCAAAATAA
AATATTTTATTTCATAGACCGACGTTCTGACGAAGGAGAAGCTGGAAGCT
GCAGACGCTCAGATGAAGCTCATCAAACTTCCACCCGGTTATGGTGTTCT
TGCAAGTGCTGTGTCAGCGGCCTTTCGAAAAATGAAATCCGATGAGTACA
AAACATGGGTGTTATACGTGTCATTGTTTGTTTTGAAAGATCTTCTTCCT
AAAGCTCATTACAATATGTGGCAAGATTTTGTACGTGCTTGCCAGCTATT
GATCAAGCCCTACATTATCGTCGAGGATGTCGAAGAGGCCCACAAATTGC
TAAAGTCTTTCAACGAGAACTTCGAAAAAGTCATCGGTCCTGATAAATGC
GTCCCAAACATGCACATGAAGATGCACATAAAAGGCTATATTTTAGATTT
TGGGCCAGTATATGCATTTTGGTGTTATTCATTCGAGCGTTTCAATGGTA
AACTAGGTGAATACCAAACTAACAACAAGAGCATTACGATGCAACTAATG
CGACAATTTCTGGACAATTAATCCATTGTCACTGCCTACCAAAAGCTTGA
TATAGATGATATTCCGTCCTTTGAAGAGTTGAAGCTGATCTCCAACGTTG
ACGAAAATTTGAAGCATCTGGTAGCACTTTGCAGCTCTAGAGTCGGCATA
GTCGATATTTCTTCATTGCTGTTATCAAACCATTCTACTTTTCTCTCTGG
AGCGAAATTCCGTCGCATCCATAAAGATGACGCCGAGTGCATCACAGAAT
ATCTTAAAGCTGTGTTTTCTACTGATGATCTATCAATTGAGCGCACCGTT
CAAAGCTACTCACGAATAAAAGTTGGTAGGGATGTAATAGCTGTTTCGAG
TTACAGAAGAAATGATAACCGCAATCAATTCATTTTTATTTCGTATCAAA
ATCAAAATCACCCTGGATTTGTTACAGATATTGTCGATGTTCATGTTAAC
ATTTCTGGAAATGAGTTTCACATCCCTTTTTTTCAAATGAGTCTTTTTAA
CACTCACCAGTATAAGAACTTTTATGGAGAAGACTGTCCTATGAAAATTT
GGAGCACCACCATTATGACAGAAATCTTTGTCCCTGTAGTGGCCATGAAA
GGAAAATGTGTTGTCATTAAAGACGATTGTAAGTTTGATCGTATACCAAT
AGCAAATGGCCGAGTGGCTAGAGCTAACTTTGAAGATATCGTTTATTTTG
TATTAGAAATGTAG

Coding sequence (CDS) from alignment at sc0000261_pilon:374423..378336-

>XLOC_030555 ID=XLOC_030555|Name=XLOC_030555|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5088bp|location=Sequence derived from alignment at sc0000261_pilon:374423..378336- (Clytia hemisphaerica_ch_hm2_pilon)
ACAGAAGTTTTGGATGATACTGATTCGTGTGACGAATTTGAAGATACCCC
TCAAAACGAATCAATTATTTTTGATGATGCAAACGAAAAAATCATTATTA
TGCTTATGTACCAACTTTTTGCCCTTCTAACAACATACTCAATTTTAGAC
AATGTTATGGGGATCTTGTTGAAATTGTTCCACTCTTTTTTGACACAATT
GAAGTCGCATGACGGTGTTGATGATAAATTGAAAAGGACAATTGAGTGGT
TTCCTTCAAGCCTCTTCCTTGCTAAAAAGAAGATTAACTTAGAAAATAAT
TCTTTCGTTAAGTATGTTAGCTGTGGAAAATGCCACTCTATATACAAGTC
AGAAGACTGCTATTACGAAAAAGATGGTAAAAGAGAAAGTCACTGCTGTA
CCCACGTTCCATATCCTGACCATCCTCAAGCACGCTTTAGAGAGCCATGT
GGCGAAACACTGATGAAATCTGTTTCAAGTGGTGATGGTAAAAAGAATTA
CCTTCATCCAAAAAGGTTATATTGTTATCAACCCTTAAAACAGTCTCTAC
AGAACCTGATTAGTAGGAATGATCTTAGAAAAAAACTTTTGGGTGGCCCA
TCAAAAGGTCCCGAAGGCGTTTTGTTTGACACCATTGATGGCAAGTTTTG
GAAAGAATTTAAAGACAATAATGGGGAAATTTACTTCAAAGACCCTCGAA
ACCTTGGAGCCATTTTAAATATAGACTGGTTTCAACCATTTGACGGTGTG
GAGTATAGCTGTGGAGTCATATATATGGCACTCCTTAATCTTCCAAGAGA
GTTGAGGTTTCGATGGGAGAACATAACAACTGTTGGCATCATCCCTGGCC
CAAACGAACCTTCACTCAATGTCAACAGTTATGTCAAACCTCTTGTCGAC
GATTTGCTGACGCTTTGGCAAGGAGATATGTTTGAGGAGAAAGAATCTAG
AGCTATGTACAAGTTCGCTCTTTGTTGTGTATCTTCTGACCTTCCAGCTA
CAAGAAAATTATGTGGTTTTGTTTCATACAATGCAAAACAAGACAGAAGT
TTTGGATGATACTGATTCGTGTGACGAATTTGAAGATACCCCTCAAAACG
AATCAATTATTTTTGATGATGCAAACGAAAAAATCATTATTATGCTTATG
TACCAACTTTTTGCCCTTCTAACAACATACTCAATTTTAGACAATGTTAT
GGGGATCTTGTTGAAATTGTTCCACTCTTTTTTGACACAATTGAAGTCGC
ATGACGGTGTTGATGATAAATTGAAAAGGACAATTGAGTGGTTTCCTTCA
AGCCTCTTCCTTGCTAAAAAGAAGATTAACTTAGAAAATAATTCTTTCGT
TAAGTATGTTAGCTGTGGAAAATGCCACTCTATATACAAGTCAGAAGACT
GCTATTACGAAAAAGATGGTAAAAGAGAAAGTCACTGCTGTACCCACGTT
CCATATCCTGACCATCCTCAAGCACGCTTTAGAGAGCCATGTGGCGAAAC
ACTGATGAAATCTGTTTCAAGTGGTGATGGTAAAAAGAATTACCTTCATC
CAAAAAGGTTATATTGTTATCAACCCTTAAAACAGTCTCTACAGAACCTG
ATTAGTAGGAATGATCTTAGAAAAAAACTTTTGGGTGGCCCATCAAAAGG
TCCCGAAGGCGTTTTGTTTGACACCATTGATGGCAAGTTTTGGAAAGAAT
TTAAAGACAATAATGGGGAAATTTACTTCAAAGACCCTCGAAACCTTGGA
GCCATTTTAAATATAGACTGGTTTCAACCATTTGACGGTGTGGAGTATAG
CTGTGGAGTCATATATATGGCACTCCTTAATCTTCCAAGAGAGTTGAGGT
TTCGATGGGAGAACATAACAACTGTTGGCATCATCCCTGGCCCAAACGAA
CCTTCACTCAATGTCAACAGTTATGTCAAACCTCTTGTCGACGATTTGCT
GACGCTTTGGCAAGGAGATATGTTTGAGGAGAAAGAATCTAGAGCTATGT
ACAAGTTCGCTCTTTGTTGTGTATCTTCTGACCTTCCAGCTACAAGAAAA
TTATGTGGTTTTGTTTCATACAATGCAAAACAAGGTTGTAGTAAATGTTT
TAAACAATTCGAACACGATGTTCCTGTTGGAACTACTAAAACTGACTATT
CTGGCTTCGACGAAGAGAACTGGACTGAGAGGGACCCTAAAGAACATGTC
AGGTTGGCGTTCAAACACAAAGCGGTGAAAACACTAGCTGAAGCAAAAGA
AACAGAACGTGATTATGGTGTTAGATTTTCTGAATTGTGTCGTCTACCGT
ATTACGATCCGGTTCGTTGTCACCTCATCGATCCAATGCATTGTCTCCTC
CTAGGTGTAGCCAAGAACACGTTGACAATCTGGATAAAAGTTGTAGTAAA
TGTTTTAAACAATTCGAACACGATGTTCCTGTTGGAACTACTAAAACTGA
CTATTCTGGCTTCGACGAAGAGAACTGGACTGAGAGGGACCCTAAAGAAC
ATGTCAGGTTGGCGTTCAAACACAAAGCGGTGAAAACACTAGCTGAAGCA
AAAGAAACAGAACGTGATTATGGTGTTAGATTTTCTGAATTGTGTCGTCT
ACCGTATTACGATCCGGTTCGTTGTCACCTCATCGATCCAATGCATTGTC
TCCTCCTAGGTGTAGCCAAGAACACGTTGACAATCTGGATAAAAACCGAC
GTTCTGACGAAGGAGAAGCTGGAAGCTGCAGACGCTCAGATGAAGCTCAT
CAAACTTCCACCCGGTTATGGTGTTCTTGCAAGTGCTGTGTCAGCGGCCT
TTCGAAAAATGAAATCCGATGAGTACAAAACATGGGTGTTATACGTGTCA
TTGTTTGTTTTGAAAGATCTTCTTCCTAAAGCTCATTACAATATGTGGCA
AGATTTTGTACGTGCTTGCCAGCTATTGATCAAGCCCTACATTATCGTCG
AGGATGTCGAAGAGGCCCACAAATTGCTAAAGTCTTTCAACGAGAACTTC
GAAAAAGTCATCGGTCCTGATAAATGCGTCCCAAACATGCACATGAAGAT
GCACATAAAAGGCTATATTTTAGATTTTGGGCCAGTATATGCATTTTGGT
GTTATTCATTCGAGCGTTTCAATGGTAAACTAGGTGAATACCAAACTAAC
AACAAGAGCATTACGATGCAACTAATGCGACAATTTCTGGACAATTAATC
CATTGTCACTGCCTACCAAAAGCTTGATATAGATGATATTCCGTCCTTTG
AAGAGTTGAAGCTGATCTCCAACGTTGACGAAAATTTGAAGCATCTGGTA
GCACTTTGCAGCTCTAGAGTCGGCATAGTCGATATTTCTTCATTGCTGTT
ATCAAACCATTCTACTTTTCTCTCTGGAGCGAAATTCCGTCGCATCCATA
AAGATGACGCCGAGTGCATCACAGAATATCTTAAAGCTGTGTTTTCTACT
GATGATCTATCAATTGAGCGCACCGTTCAAAGCTACTCACGAATAAAAGT
TGGTAGGGATGTAATAGCTGTTTCGAGTTACAGAAGAAATGATAACCGCA
ATCAATTCATTTTTATTTCGTATCAAAATCAAAATCACCCTGGATTTGTT
ACAGATATTGTCGATGTTCATGTTAACATTTCTGGAAATGAGTTTCACAT
CCCTTTTTTTCAAATGAGTCTTTTTAACACTCACCAGTATAAGAACTTTT
ATGGAGAAGACTGTCCTATGAAAATTTGGAGCACCACCATTATGACAGAA
ATCTTTGTCCCTGTAGTGGCCATGAAAGGAAAATGTGTTGTCATTAAAGA
CGATTGTAAGTTTGATCGTATACCAATAGCAAATGGCCGAGTGGCTAGAG
CTAACTTTGAAGATATCGTTTATTTTGTATTAGAAATGTAGACCGACGTT
CTGACGAAGGAGAAGCTGGAAGCTGCAGACGCTCAGATGAAGCTCATCAA
ACTTCCACCCGGTTATGGTGTTCTTGCAAGTGCTGTGTCAGCGGCCTTTC
GAAAAATGAAATCCGATGAGTACAAAACATGGGTGTTATACGTGTCATTG
TTTGTTTTGAAAGATCTTCTTCCTAAAGCTCATTACAATATGTGGCAAGA
TTTTGTACGTGCTTGCCAGCTATTGATCAAGCCCTACATTATCGTCGAGG
ATGTCGAAGAGGCCCACAAATTGCTAAAGTCTTTCAACGAGAACTTCGAA
AAAGTCATCGGTCCTGATAAATGCGTCCCAAACATGCACATGAAGATGCA
CATAAAAGGCTATATTTTAGATTTTGGGCCAGTATATGCATTTTGGTGTT
ATTCATTCGAGCGTTTCAATGGTAAACTAGGTGAATACCAAACTAACAAC
AAGAGCATTACGATGCAACTAATGCGACAATTTCTGGACAATTAATCCAT
TGTCACTGCCTACCAAAAGCTTGATATAGATGATATTCCGTCCTTTGAAG
AGTTGAAGCTGATCTCCAACGTTGACGAAAATTTGAAGCATCTGGTAGCA
CTTTGCAGCTCTAGAGTCGGCATAGTCGATATTTCTTCATTGCTGTTATC
AAACCATTCTACTTTTCTCTCTGGAGCGAAATTCCGTCGCATCCATAAAG
ATGACGCCGAGTGCATCACAGAATATCTTAAAGCTGTGTTTTCTACTGAT
GATCTATCAATTGAGCGCACCGTTCAAAGCTACTCACGAATAAAAGTTGG
TAGGGATGTAATAGCTGTTTCGAGTTACAGAAGAAATGATAACCGCAATC
AATTCATTTTTATTTCGTATCAAAATCAAAATCACCCTGGATTTGTTACA
GATATTGTCGATGTTCATGTTAACATTTCTGGAAATGAGTTTCACATCCC
TTTTTTTCAAATGAGTCTTTTTAACACTCACCAGTATAAGAACTTTTATG
GAGAAGACTGTCCTATGAAAATTTGGAGCACCACCATTATGACAGAAATC
TTTGTCCCTGTAGTGGCCATGAAAGGAAAATGTGTTGTCATTAAAGACGA
TTGTAAGTTTGATCGTATACCAATAGCAAATGGCCGAGTGGCTAGAGCTA
ACTTTGAAGATATCGTTTATTTTGTATTAGAAATGTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_030555	XLOC_030555-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000261_pilon	genome	sc0000261_pilon:374423..378336 -

Properties


Property Name	Value
Aaloc	1612-2808:1198
Aaloc	1309-1611:2039
Aaloc	265-1305:3915

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XLOC_030555 (mRNA) -