|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000001_pilon:1467291..1473259- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_029803 ID=XLOC_029803|Name=XLOC_029803|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5969bp|location=Sequence derived from alignment at sc0000001_pilon:1467291..1473259- (Clytia hemisphaerica_ch_hm2_pilon)
CGAAATAGAATAAAAACAAATATGGTAGCATCGAAATCGAAAGTACTTTC
TAGCATCAACACATCAACCTGCATCAACACACAAAACCAGATGATGGCGC
ATTTAGACTCTGTTGAGTTTGTTATTATATCAATTGGAAGCAACAATTCA
GCTCTAAAGGACATATTAAAAGGTGAATTTTATCAGCATATTGGTGTAAA
GTAGTAGAAACATTGAAAAATATTGACTTCAAACATAGGTAGCGTCTGAG
ACAACTCTGATGCTGCAATATATTAAAATTTCCTCAGACCTCACTTCGCG
CGCGCCCTCCTTTAAACAACCTTACTGGCCAACGCACCGGGAAGTCCAGT
GTGTTTGTCCGTGCCAAAATCCCTCAGCCAGACGGGAACCTTTTGTCTGG
TGTTATGTTAATTTTTTGAACTTCTTGACACCGGAGACAAAGTTTGTTTA
AAAACAATAATGTGCACCGGGCCAGTCTTGAAAGAAGAGAATATTTACGC
CAGAGATTTCTTGGCGTAGCCTTTGTTTAAGCCTATGAAATCCAAAGTCT
GTGCCAGAGATATCCGGCATACATGCCTTATTTTCCAGATTGGGCACCGG
GCGGACGCACTGGTTGAGATAGATTGTCTGGTGTTAAAAAGTTTTACTTG
AGATTTGTTCTTTTCTAAAGAAGAGATTTTTTTTTTTTAATCTGAAAATA
ATTTGAATGTCATTAATCATTAAACATTAAAAAAGATGAAAAAAAAAGAA
GAGTAAGAGCAGAAATTATGCAATAGACCGCTGTGTTTGCCTAAAGGAGT
ATTATTTCTATGTTAAGTTTTCCTGTCTTTTAAAGCTTCAGCATGATAAA
AAATGTGCCCAAGACCACCTATGTCTAATATTTGCCAAAAATTGGTCTTT
TTCTTATCTACAGTATGTCACTGCTCAAAAGACCAATTTTTGGTAGATAT
TGGACATAAGATAATAAGACAGAATATAAACCCTAAACAGACAAAACTCT
GATCCTTTCAAACAAAATTTGGTCTTCTCAGATGCAAAGTTTCAATTTTT
ATCCAAACCCTGCCAAAACAGATTCAACTTTCAATATCTAGTAAATCCCT
GCAGATTTTTTTACATTTTGAAAAAGTGACTCTATAGTGGCACATCCTAT
ACAAAATTTTGTCCGAGGGGACGGACATGGCAGCTCTCAATATCACAGTA
AATTAAAAAAACCTAAACTAAATTGAAATTTATAACAAAAATGGCCTGTG
AGGTAATTGATGATCAAGGATAATTTGAAATTTTTCTACTAACAGTAAAC
AAGTAATTAACTTTAAACAATAAATCTCAACAAATAATATAAATACAGAT
AAGACATACCATTTATCAGTAGAAGGTTCTCCTTCATTGATTAATCATGT
CAAGAAAATATAGTAAAGCATTTTAAAGAGAAGACTTGAGCACTTTGCTC
CAAAACCTACTTACAAGTAATACAATTAAGTAGCAGGCAACCTAACTGGC
AAAAGTGAAGTTATATCATAGTATGTTGTTTGATGCTGATTCTTGTAATA
TATTTGCATAAGACAATGAAGCCTAATCTCGCAAATTCTACATAAAAATT
ACGAAAATGAAAAAGTTTTAAATGTGCTGTCAGCAATTAATAGGTTAAAA
CATCTTGTCAAGTAAAACCAAAAGTATTAGATTAAAATATGAGTTAGAAA
TGTATAAAAAATTTGTTTGTTAAAATCTAGTATAAAATATAAATAAGCTA
AGATACAAAATGATGTTTAATGTCAAAATTTAACCTTAATCTTTATATTT
CAATTCAACTTTAGAACTTGATCCTCATGATGAAATTGAAAGCAACACTT
CATATACTTGGCACTTAAAAAACAAATATTTCAAGGCTGACGTCAACATT
TATTGCTGTAGTAGAGAAGAGTTTTTGAAAAACTTTTTAGAATTTCGAAA
ATTGGAGGCTGTATTATTCACTTTTGATGCTGCATCTGTAAGTATGCAAC
TCTTTATTTATTCTAAAAGTTTTTTCTTCATCCATACACTTATTGGTATA
AAATAAAGGCTCAAAAGTAATCATAAATAGTAAATCTATCTGAATCTATC
TATATATTTTAAAGTATTAAAAAGCTGTCCTAAGACCCATTATCTATACA
TACAAATAAGAAGATTTTAAGAAAATAAAAAAGTGTATAAAATTTTAGCA
ATTCCAATAAGAGTGACACAAAGAAATTAGCTCTGGATCTTTATCATTGT
GTATAAAAATTAATCATAAAATTATTATTTTAAGCCTGTGCTGTTTTAGC
CTGTTCTTCAAGAAAAAAAAATGTTCTTTTTTTAGATTTTAAGCCCTAGA
ATTGATAAATTATCTTATTTTGTTTCATTTTCATCATAAGAGTGATTCGT
TTTGTGAAATTGAAAAAACATCACACCTTTTCAAAGAAGATGAGAGCCCA
GAGCTTCGGATGGTCTGGGAAACAAGCAATAAAGGATTAGAAGGTAAATA
CTCTGATCTCCATTTTGACAACCCTGTTGCTAATTTTGTTTTTTAATTTT
CTGCCCCGGACATTTTTCAATATTTTGATCTTTAGCACTTTAAAGTATTT
TTCATTTTTTTAAATACAAAGTGCCTTAAAAAGGGTTTGAGACGTTTGAC
TAAGCACAAATATCTTATATAAGACACTAGAGCTCTTGCTTCCTTATCTT
GAATGAAGGGACGTCACAATTTAGCTTGCGCCTGCTTGAGGGAGCCTTGA
AATATTGATGTCATTGCAGTGTCAAAAAAACTTTAACAGTCAAGGTTTCT
ACTGTGGTCTGCTATTAGCAAAGATGGCGGATTATTTAGCTTTATTCTGT
CTTGCTTTGGGAGGATAGGGTGGCTCTATCTAGTGTTTCATATAAGATAT
CTGTGGGTTGAAGGGATGGGGTTGTTCTGCTGCTTCCATATGGATACAAA
ACAAACAATAGAGAGAAATTTATTTTAAAATAAAAAAACATTAGTACAAA
ATGCTACCTAACAGTCCATGTTCCAAGCACTACAAATTTGGTTTTTCAAT
GTGAACACGGATTTTATTATTTACTTGACTAAAATTCTAAACTTTTGGGA
ACTGAAATGTACTTTAAGTTATATTTATTTCTTTTGTTTTTGTTTAGATG
CAACAAAGGATAAATATTTTTCATGGTGTTTGGATCACCAATTCGAGCTG
ATCGAAAATATGGAGACTGGAGAAGAGGCAGATGAAGGTATAGAATTTAT
CATATTCCTTTTTCATTCAATTTTTAAGAATCGATATGATTCCTAAAAAC
GAAAAGTACCCTTTTTTAACCTTCGAAACTGAAAATATTTTAAGTTTTTT
TACCATCTCAAAAAAGTTCCATAATCCTATCTACTTTCGAACCAATCACA
TGCGGTTGAATCCTACGAAAGATGCTACGGATCATAAGGGTTGGCCCATC
CTGTATGGCATGAAACTTTGAGTATGAAATTAACTTATTCAAACTAGTAA
AAAACAGATTGCAAATGTGTTTAGCCTTCTTTATACATTCGACATTGTAT
TCAATTTTCTGCAAGACTCGTGAGTGGATAGTGTAGAAATCTAAGCTAGT
AGACTCACGCACTAGGATAAATCTGATGGTAAGTTGTGACAAGTTGTATT
ATAATTTTGTCGGAAAAGTGATTGAAAACGAGGACCGTAACGATGTTGCT
TATTCCAATAAGAGTGTTCTTAACGTAGTAGTCCCATTTTATGAGAATTT
GAGGCCGCAGCATGAAGGTAGAGCATCCAGCTACGGTGTGCAAGATTGTG
GGTTCGATCGCCAGCAAATGTCCAAAACAAACTTGTAAAACAATTGAAAT
AATCAAAATCAGCCATATTTGTTTTTATTTTTTATTTTGACATTTGACAT
TTGTTTTGATTTTGTATCCCGCTGCAAATGGTTTGTTTACAAATTTCGTC
AGTACTTTTATGTCCCTTTAAGCCTGACTATTCGATCGATGATCAATGTA
GAGCCACGATTTATTAGTTCTCAGAGAACAAAAAATATGATTTGTAATTC
TTTTTTTTTTTCAGATAGTTTTGGTGTGAAGTATGGCGTGGACAGGATAA
AAGAAGCCTTGCGTTCACATATGTGGGCCAACCATCAGATGATAGGTTCG
TTGTAGTACAGACTTCGTACTTAGTACAAAATGGCACTTAATGCCTCTCA
GCTTGATGCTTAGCAATTAAGAGAAAGGATCAAGGGGAAAGTCGAGCAAT
CCAGGGAGAAAGAGTGTCCCCTTCTCCTACCTTCAGGTAGATAGCTATCG
AAAGGGGAGCCCTCGGTTCGCCTCCGACTGCGGTCACAGACTTACTTAAT
TATCAGATGCCTAACAATTACTTTATTCAATCTCATTAGTCTTACTGAAA
TTCCAAAAAATTTTAAAAGCCCATTTTTTACCTTAATTTATTTTTCGAGT
TTTTCAAGCATAGTTACACCCCTTGTTTCAACTATCCAATTCGCTTTTAA
ATGTACACTTTTTCTCGCTATCATGTGAAAACCACGTCGGCGTTAGTAGA
GTAATTCCCTTTAGAGTGGTTTCTATATTGTAGTAAGAAAGAGTACACAT
GTTTTCTTTATTATAAACATATTTAAAGCACTTATAAGCATATATCTAGG
CTCGGATATGGCAGAAATTTAAGCATATGATAAGCATTACCTTGAGCCTA
TGAAAAATGTATTTTCCTGTTTTTGGCTGGGATTTTACAGATTTTCGGAA
TTTCTCTAAGATTTTGCTTGGGATATAATAATCCATATAAGCTTTTTTCA
GCCTTGTCAAGCCCTCGACCTAAGCATCTCCGAGCCTGTTTTCAAATTTT
TGCATGCTTATAAAAATAACATGTACACTCAAAGTGAAACTTTATGAATT
TTTTTCTCATTCTTCACGTTTTCTTTTATTAATTAAGAGCCAGATGAAAA
ACCGAAAAAACCTTCAACAACAACAGTGCATAACGAACAACAAACAATGA
CAGAACAGAACGAAGATCTTTTTCACGATAATGAATCATTCGAAGATCTT
TTCAACAAATTACACGTTATGAAAGGTAAAAACCAAACCTCGGCCTAGCG
AACACCTTACAAAAAACTGGGATTTTTCATCCCGTTTCTTAGTGAGTTCC
ACTTTGACGATTTTCGAAAAATAGAAGCCTTTCAAGTGCTTTGAAGCAAA
TTCGATTTCTTTGCTACTGCAAGAGCTTCGATTATTATATTGACGTCAAA
AAGTCGAATGTTTGGAGCCCGAAAACCTGGGCTCAAAACATTCGAAAAAG
TCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAACGCGGGTCGCGTCTA
ATATAGGCTAACCTCGGCCTTTCCTAATACTAATTTCGTTTCGCAGTGCT
GCAACTCCGTAGACAGCTGGATTTTATAGCATGAATTTCCGTGCCAAACG
AGCCTTTTCGAAAGCCTGTACCAGAAATTTGGATTTAAATTTTAGATCTT
CCGCACAGATTCACCAAAGTCGGTTGCAATACTGATATAAAGAAATTTCC
TACTTTAATCATTACTAAAAAATACTTGATTCCAAGCTACTTTACACAGA
CTCTAGGTCTAGACAGTCGTCTTTCTGTCTTGCCTTCCGATTTTTTTAAA
AAAGTCGGCGAAGAGACAAGCTTTTAAAGTCAATGCAATGCCTTTTACGA
CCTCAATATTTTGACTGTCTTCACTTCAATCTTTTTGAAAGAAAAATTTG
AAACTGCCTCATTCTCAAATCGTATCGTGGGCAGAAAGTGGACCGTTTCA
ATTTGGTCTAACTTTGAAATATAAGGAAGACCATGTGTTTTGTATTGTGT
TTTTAGAGCAAGCACAAAACCTCGATGGAGACGCACGGAAAGATTATGCT
GAAAAAGTAGCGTACGCTTTCATGGAAGCACTTGGTATTGATGATGGAGA
AAGTGATTCTGAAGATAGG Coding sequence (CDS) from alignment at sc0000001_pilon:1467291..1473259- >XLOC_029803 ID=XLOC_029803|Name=XLOC_029803|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0000001_pilon:1467291..1473259- (Clytia hemisphaerica_ch_hm2_pilon)
CGAAATAGAATAAAAACAAATATGGTAGCATCGAAATCGAAAGTACTTTC
TAGCATCAACACATCAACCTGCATCAACACACAAAACCAGATGATGGCGC
ATTTAGACTCTGTTGAGTTTGTTATTATATCAATTGGAAGCAACAATTCA
GCTCTAAAGGACATATTAAAAGCGAAATAGAATAAAAACAAATATGGTAG
CATCGAAATCGAAAGTACTTTCTAGCATCAACACATCAACCTGCATCAAC
ACACAAAACCAGATGATGGCGCATTTAGACTCTGTTGAGTTTGTTATTAT
ATCAATTGGAAGCAACAATTCAGCTCTAAAGGACATATTAAAAGAACTTG
ATCCTCATGATGAAATTGAAAGCAACACTTCATATACTTGGCACTTAAAA
AACAAATATTTCAAGGCTGACGTCAACATTTATTGCTGTAGTAGAGAAGA
GTTTTTGAAAAACTTTTTAGAATTTCGAAAATTGGAGGCTGTATTATTCA
CTTTTGATGCTGCATCTAACTTGATCCTCATGATGAAATTGAAAGCAACA
CTTCATATACTTGGCACTTAAAAAACAAATATTTCAAGGCTGACGTCAAC
ATTTATTGCTGTAGTAGAGAAGAGTTTTTGAAAAACTTTTTAGAATTTCG
AAAATTGGAGGCTGTATTATTCACTTTTGATGCTGCATCTAGTGATTCGT
TTTGTGAAATTGAAAAAACATCACACCTTTTCAAAGAAGATGAGAGCCCA
GAGCTTCGGATGGTCTGGGAAACAAGCAATAAAGGATTAGAAGAGTGATT
CGTTTTGTGAAATTGAAAAAACATCACACCTTTTCAAAGAAGATGAGAGC
CCAGAGCTTCGGATGGTCTGGGAAACAAGCAATAAAGGATTAGAAGATGC
AACAAAGGATAAATATTTTTCATGGTGTTTGGATCACCAATTCGAGCTGA
TCGAAAATATGGAGACTGGAGAAGAGGCAGATGAAGATGCAACAAAGGAT
AAATATTTTTCATGGTGTTTGGATCACCAATTCGAGCTGATCGAAAATAT
GGAGACTGGAGAAGAGGCAGATGAAGATAGTTTTGGTGTGAAGTATGGCG
TGGACAGGATAAAAGAAGCCTTGCGTTCACATATGTGGGCCAACCATCAG
ATGATAGATAGTTTTGGTGTGAAGTATGGCGTGGACAGGATAAAAGAAGC
CTTGCGTTCACATATGTGGGCCAACCATCAGATGATAGAGCCAGATGAAA
AACCGAAAAAACCTTCAACAACAACAGTGCATAACGAACAACAAACAATG
ACAGAACAGAACGAAGATCTTTTTCACGATAATGAATCATTCGAAGATCT
TTTCAACAAATTACACGTTATGAAAGAGCCAGATGAAAAACCGAAAAAAC
CTTCAACAACAACAGTGCATAACGAACAACAAACAATGACAGAACAGAAC
GAAGATCTTTTTCACGATAATGAATCATTCGAAGATCTTTTCAACAAATT
ACACGTTATGAAAGAGCAAGCACAAAACCTCGATGGAGACGCACGGAAAG
ATTATGCTGAAAAAGTAGCGTACGCTTTCATGGAAGCACTTGGTATTGAT
GATGGAGAAAGTGATTCTGAAGATAGGAGCAAGCACAAAACCTCGATGGA
GACGCACGGAAAGATTATGCTGAAAAAGTAGCGTACGCTTTCATGGAAGC
ACTTGGTATTGATGATGGAGAAAGTGATTCTGAAGATAGG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001_pilon | genome | sc0000001_pilon:1467291..1473259 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 760-870:112 |
| Aaloc | 622-756:1031 |
| Aaloc | 541-618:1904 |
| Aaloc | 451-537:2821 |
| Aaloc | 346-447:3580 |
| Aaloc | 175-345:4154 |
| Aaloc | 1-171:5970 |
|
