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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000049_pilon:1617735..1624495+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_029732 ID=XLOC_029732|Name=XLOC_029732|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6761bp|location=Sequence derived from alignment at sc0000049_pilon:1617735..1624495+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTaaaagaaaattgtcaaaaagtgAGGAAGGTTCATCCAACTCAAA
AGTTGCATTTCAAATTGAACAAACTAAGAAGCCTGTCGATGATGACGATG
CATATGCTGACACAGACACTGAAATGGAAGATGCAGAGGGTGAAAAACAA
CCGCAATCAACTCTCTTTCGTTTGTCTAGTCGACTGGCATCTATGAAGAG
AAGAGGTATATATAAGATAATAAGGAAGTTTGATAGTTAATAAGGGAACT
GAtttttttAtggttgatattttttgttctagGTTTGAATATTTCTCATA
ACTTTTTAGGGCTCTTATATATGGAATGTTTTATTTCAAGTCTGGGGTga
atctttaaaacaaaagtaaaatcattGTGAtgcttttaaaaagttttcat
tgaatttcaaattttcaggaaaagaaGTTGAGGTCAAAGAAGAGTACGAA
GAGTTTGAATATTTTGCAGAAGATTGCGTGACGGTTCGTGCACCAGGGAA
AGATTTTTATTTATGTCGCATTCTGGATGATGTACCTGAATCTACTAATG
AAGAAATCAACATAGCATGGTTTGATCAAGTTGGTACAAATAGATACAAG
GTAAGTCTTTGCTGACGTACTGTAGTTATATTTCAATACAAAATCGAAAT
GTCTATATAATGTTGTATGATAGTTTATGTGTTATTTGGAAGAGTTGCAT
TGGAAGAAAGAGAGGTCCTTACATTTCCAGAATGTTTTCAATTAAATGAG
TCGTACTTTAAAAAGCAAGGTTGATTTATTGTACTTTCGTGggccatttt
agttttgaaGTTATAGAGCTTATTTTGTATATAAACATTTAATAACCTTT
GTTCAGTAAATATCTATTAAAACTTCTCCTGGAAATCAAACCCCGTAGGT
TGACGGCTCCTAGACGGCTCAATGCAGAACCTGTGGCAGAGGAGAAGCCA
GTCATCATCAGTACTTCTGCTGTTTCTAAATCTAAAGTTGTTGTCAAAAT
TTTATGTTAGGTTTCATACGATGACACTATTTACAAAGCGtcgatcattt
ctcatgttggTGTCAAAGAAGTGACAGACGAACCAGGGCTGTATTACATC
ACACCCAAAACgttgaaaaacaccaaaagttTGTTGAAAGAAACGTTGAC
AAACGAAGGAGAACATTTTTCTGGtgatgatgatgacgatgtCGATGGTG
CTGCTGGAGATGATGAAAGTGCTGGGGAAAATGAAGgtattttttctaag
aatttgaACTGATCTTTTCTTAAAAAGCAGCCTGTATGAGATCTGCATCT
TGTTCTATTGGGCAGGCATAAGACTATCTGTATGAATCATGAATCAATAA
GCACTCTTGAagtaattataatttttactTGGCTTTTTCTTCATAAAACT
GTCTGAAGAGGTCTCCATTTTGTTAGGTTAGGTTTAGTTTTAAGTGGAAC
GCAATAATTGTTAAGCTATTTTAAGAATgcagaattcatgatatgcacca
ttgcaatgtcttctacgtgacccaacagctgattggttgaaagtgacgta
ttgactgattttacgtcatttGTACAACAAATCAGccattgggtccgtga
tgtaatggcgatggtgcatatcatgaatagagggAGTAATGATTAAAAGG
CTCTCTCAGTTTTTTAAGCCATTTTACTTTTAGAGTATTGTATTGCCCGG
TATAAAAAAGGAACCCCTTTTCTGGTCATGACATATAGTAATCACTTCTA
ATTTGCAAAATGAGTTTTCGTGCTTAATATAATATTGTCATTTGAATAat
atttactttaaattttcagaagctccaaccaaaaagaaatcaagaaagaa
atcaacttcaaagaaaacaccaaaagcaccaaagGGCTCTACAAAGTCAG
CCTCTCCAAAGAAAAAGTCTGCAAAGCGGGGTAACAAGCTTATTCCAAAT
CCTGACATCAATTTATTGGAGGAAGACCCAACATACTCCAAGGACAGCAC
GGTTCCTCTGTCCATCGAGCGACAGGCTATTAAAGCTGTTATTACCAACG
ATGATGCTTTATTGGAAGCTTTGCACAAGGATGGAAAGAATTGTTATACT
TTATTCCAGCAACGTAGCCCTCAAATATCACGTTCAGCTTACAAGTATGC
CTTACTTCAAGAGAACTTGGACTATTGCAAACTGATGTTAAAAGATAGAG
ATGAAGTTACTGCCAAACCAAAAACTGTCGATTTGAGCAGAAAAGATACC
GGAAAGTAaggattttaaaaatatattgggTATAATGCATATTTTTCGAC
ATTCAGAAATAACACTTCACCATGAGGGTTTATTTATTCTAAGTTCACTT
TTCTTCAAAGCTCTAACTTACGTTTGATGTAGCGATTAGGATCCTGATTT
ATCATTAGCCTGGCTCTGAGAGCCGACCTTTTGATTGAAAATGCCTTATT
GAATTGAAAGTTACTTTTCCTCATAAGCTACTAAAAGGCGTTTCAATCTG
CTCACAAAAGCTTTTGAGCAATATCTAACGTCCATGGGGTTCATAACGTC
CATGAAACAACGTTGGGTGTCAATTCTGAAAAAATTCTGATATGCAATCT
TAAGCTAAAGCCCATGGCTTCGTAAGAGAGTCTGCCCAAGTTTTAGTGTT
TCATCCAGATTTAAGATGAAAATTAAATAAGATTTTGAGCGTGGTGATTG
GGTCAAGCAAAACGATTGCTCCAAAATCatgcttttaaaaatttgaaatt
tatgatatgcactattgcaatgtcttccacggacccaacagctaatttgt
taaaagtgacgtatccatgatatgcaccattgtaatgtcttccacggacc
caacagctgattggttgtaagtgacgtaaaatctatcaatatttcacttt
caaccaattagctgttgggtccgtcgaagacattgcaatagtgCATATGA
ATTAATAAGAACAAGACTTGTTACCATTGCAATGGTTTCCACttagttta
atattttctttatgataaagCAAACTTTGTTTTCAGGGGTGATTATAAAA
TGTTTGGACATGCAGTGCGTGAAGTTACTGTCAGTCGTGGCAACCGAGAA
GGAAACAACGCTTTTCTGGCGGATGAAGTTCAAAGAAATACCGATCATCT
TTACGCTGTTTCCTTTTGTATCAAGAAGAATATCTCTATTGATTTCGTGA
AgaaacatttgaaggcttttgACAGGGTATGACTTATTACAATTAATCCC
TTATGGAGTATTTGAGTCGCAGACGCAGACCTCTACGGAAAAGTAGAAAA
TCGTTGCTGAATGTCAGCAGCCTACGTTTAGACATGTGTTTTTCATAGAA
TTTCATGCCTCTTTTAAATTGCCTCGCTAAGGGTGATTAAAAAGAAACCA
CACCCTTATATTTTTTAgcgtaactttttttctattcatCGTATCACTGT
GAACATTTTTTCTTAGTAAATTTAAAGCCTATGTGTGAAATTTGTAAGTT
ATACCGTAAACATTTATCAAGAAtcagaagtttgaaaaaaagtaaacaga
aaaaaagaaacttcaaaaattctAGGGTTGcggttttttctgaaaagacc
CTGTAATTGATTATATCAGTTTCTTTTCCAGGAACCTAGCTCATTGATTG
ACCATTTTTATGAAGCTGTTCAAACTGGTAATCGAGAGATGGCTGGTGAA
ATTGTCAAAATTGCAATCAAGAAGGATGGATACGGTTTCAATTTCCTTCA
TGataatttgttgaatttcaCAAAAGAGAAACTGCCATCTTTCAAGGCTG
CGTCGGTTACCAAGAAAACCCATGTCTCTTTTTCTGTAAGTACTTTTTCT
ATGATTTATCAACCATTTGATATTTTGTCGGGTTTttcccactgaccttt
atataccctttatagaccaagctatatctgccatctttgatcggattttt
taaaagtgtttcCCGCGAAGAAGCCATTGTGCAGTGTTGAAATTAACATC
TAACGGGCTACATCGTCATaagtattcgaggaaaagtaaatctagcgctc
tcgatgcgtttacaccgctattgattAGTgctgccattagggtaccaatt
taactccgatcaaagattttgcttggctgagATTGAATAACTTGGTGCAG
GGTATATTAACGTCGGTGGttatttcaggaaaaaaataagcaGTTGTTGG
GGatgttttctacaaaaaattaactttgtttGATCATCACGGTGTGTCGT
TCAGAATACAAGCGTATATGATGACTTTTTGGTTATATCCAggctttttt
tattgaattgttCACTTGGTTCATGACTTTCGCTTTTAGCGCTTCtttta
aagtaaatattacattaaagatttaaaacaaaaaatttaaaattattcat
attttcgtatttaattaCGAGCAGATTGCACCGATGTTTTGCGCTTGTAT
CAATCCTAACGCCAAATACCTTCAAGAAGTGTTGAATGTCCATGAtgaca
tcaatatgtcagacaACGCGGCGAACAGACCTATTCATTATGCTGCTGCT
TGTTCAGGCCCTGGACCATTGAAACTCCTCATTTCAAGGTTTGCTATGGA
TTAtttttttCGCCGTGTtaataaaaatcagaaagttttcaagtttcaaa
tgttttaaaatgaaactCGACGTTTTTAAGTCTTATTAACATCATTAGTA
GttctcatcaaaaaatcaattcCTTTAAGGAAGTCTAGGTTTGATAGCtt
tttttAACGGTAGCAGGTCGTATGACATGTAATCCATATTTCTTTAGTGG
CTTTGATAacatggcatggaccaggggtttaggtaccccctaagaaaata
ggtaccccctaaggaaataggtaccccctgaattttaggtacccccaaac
aacagatgttagtaggtaccccctgtgattggtacccccctgtgacttga
cttgtttttctgtatatgtcaagaaatgaaaaaattgtatatttttataa
ttaaaaagaataatgatagatagataaaagcaagatataaaatatagttt
cccagcccccagaccttactgtATAAAAGATAGgtacccccagagatcat
aggtacccctggaaattaaaaaaaatccagcccccagcctttttcaggaa
gattttggttgtaggGGTCATTCCATGTATTCCCCATAAGAATCTAAACG
TGCGATTGTCTTGCTTTTAAAAGTGCCTGAAAATGACTAAAATGTTATCT
CTTAAAATCTTCTGTTCTTCCCTTTACGTCCTTCAGGGGAGCTGACGTGA
CCATCCCGAACGGGCAAAAATTGACACCACTCATCATTGCTGTCAAATGC
AACCGTGTGGAAAACATTGCAGTTCTGATGAGTTGCAAAGTGGCTCAGAA
TGAAGATAGTGATGATGGTGAGGATGAAGAAGATGAAACTACTAGTGAAA
AAGGTACATacagaccatgttcagacgttacggtttcgtatagctccggt
atgattttcgttacggatcgagagtgttcatactGATtttggaacgtttc
ggagcagtTCTGTTCAGATGAAGATAGTGGAATGAAACTGATTggatctg
ttttgcttttgtAACGTCTTCATTTTTTGACGATTCAAATTTTCACATTC
GCACAgtgtttgttcttttaaaagaaaaaagttaccTTTGTTTGTTGTAG
ATAAAACTGACGAAGCAAACACACCAATGAAACCTAAGATCAACATCAAC
GCTAAAGACAAGAAAACATTCACTGCTCTTCATCATGCAGCTAAACGTGG
ATTTAACGTATGTAGCAAGTTATTAACAACCTCGTCCGatgttttattta
ctttgcttGTTGACACACAGACCTGTAAAACTCGAAcggctagatggcgt
gcttttACTGAAAATTCTGCATTGGTTCGGTAGGAAGTTACTACCGAGGT
TACGcgatattacaatagaatttccaatcagaagcttcgcggcttatcaa
aaaacattttatttgcgatattcacttatTTTTGCTTGGCAAAGCTTGAA
GCACtccttctagcccttcgggctttacagaaatctcgGGTTGACTTCGA
ATTAGACAATTCTAGAGTTGGAAAGAGTCGATAGAGTCGAtttttttACT
TGGATATACAAATTTCAATTGCTTTCACGGGTTCCACGGCCAGCTCGCTc
agctactttaatgggataaactttcgcggggattaaatttcgcggatttc
gcggatttgggtgtcatccgtaAAATTAAGTCCCAACGGAAATTTGGAAG
Ggtctcatccgcgaaatatttctaaacaaaactcaaaatatgtcaaataa
atactatttcaatgtctacttgcatcaaagaagcgcaaataatgcgtatt
tcaacaaccaacatgcattatttgacagtaaaagtcacaaaatcgtgaaa
atattgccacccaatagtgccagccgcgaaattaagtccctgcgaaattt
tatcccGTTAAAGTATCTTTGAACTGTACGGAACATTCAGTCCAATGCAA
CAATATTATTGCCAAGATCATAAATTTCctatcttttttactttttatct
tcTCTTAGGACTGCATTAAGGTATTGCTGGAACACAATGCTAATGTCAAT
ATCAAATCAAGTGCTGTTCAAGAGAATATGACACCACTTGGTTTGGCTGC
AGCCAAAGGACATTACGAAACAGTCAAATTCCTCCATGAAAATGGTGCTA
AACCTGACctg Coding sequence (CDS) from alignment at sc0000049_pilon:1617735..1624495+ >XLOC_029732 ID=XLOC_029732|Name=XLOC_029732|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000049_pilon:1617735..1624495+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTaaaagaaaattgtcaaaaagtgAGGAAGGTTCATCCAACTCAAA
AGTTGCATTTCAAATTGAACAAACTAAGAAGCCTGTCGATGATGACGATG
CATATGCTGACACAGACACTGAAATGGAAGATGCAGAGGGTGAAAAACAA
CCGCAATCAACTCTCTTTCGTTTGTCTAGTCGACTGGCATCTATGAAGAG
AAGAGATGCCTaaaagaaaattgtcaaaaagtgAGGAAGGTTCATCCAAC
TCAAAAGTTGCATTTCAAATTGAACAAACTAAGAAGCCTGTCGATGATGA
CGATGCATATGCTGACACAGACACTGAAATGGAAGATGCAGAGGGTGAAA
AACAACCGCAATCAACTCTCTTTCGTTTGTCTAGTCGACTGGCATCTATG
AAGAGAAGAGgaaaagaaGTTGAGGTCAAAGAAGAGTACGAAGAGTTTGA
ATATTTTGCAGAAGATTGCGTGACGGTTCGTGCACCAGGGAAAGATTTTT
ATTTATGTCGCATTCTGGATGATGTACCTGAATCTACTAATGAAGAAATC
AACATAGCATGGTTTGATCAAGTTGGTACAAATAGATACAAGgaaaagaa
GTTGAGGTCAAAGAAGAGTACGAAGAGTTTGAATATTTTGCAGAAGATTG
CGTGACGGTTCGTGCACCAGGGAAAGATTTTTATTTATGTCGCATTCTGG
ATGATGTACCTGAATCTACTAATGAAGAAATCAACATAGCATGGTTTGAT
CAAGTTGGTACAAATAGATACAAGGTTTCATACGATGACACTATTTACAA
AGCGtcgatcatttctcatgttggTGTCAAAGAAGTGACAGACGAACCAG
GGCTGTATTACATCACACCCAAAACgttgaaaaacaccaaaagttTGTTG
AAAGAAACGTTGACAAACGAAGGAGAACATTTTTCTGGtgatgatgatga
cgatgtCGATGGTGCTGCTGGAGATGATGAAAGTGCTGGGGAAAATGAAG
GTTTCATACGATGACACTATTTACAAAGCGtcgatcatttctcatgttgg
TGTCAAAGAAGTGACAGACGAACCAGGGCTGTATTACATCACACCCAAAA
CgttgaaaaacaccaaaagttTGTTGAAAGAAACGTTGACAAACGAAGGA
GAACATTTTTCTGGtgatgatgatgacgatgtCGATGGTGCTGCTGGAGA
TGATGAAAGTGCTGGGGAAAATGAAGaagctccaaccaaaaagaaatcaa
gaaagaaatcaacttcaaagaaaacaccaaaagcaccaaagGGCTCTACA
AAGTCAGCCTCTCCAAAGAAAAAGTCTGCAAAGCGGGGTAACAAGCTTAT
TCCAAATCCTGACATCAATTTATTGGAGGAAGACCCAACATACTCCAAGG
ACAGCACGGTTCCTCTGTCCATCGAGCGACAGGCTATTAAAGCTGTTATT
ACCAACGATGATGCTTTATTGGAAGCTTTGCACAAGGATGGAAAGAATTG
TTATACTTTATTCCAGCAACGTAGCCCTCAAATATCACGTTCAGCTTACA
AGTATGCCTTACTTCAAGAGAACTTGGACTATTGCAAACTGATGTTAAAA
GATAGAGATGAAGTTACTGCCAAACCAAAAACTGTCGATTTGAGCAGAAA
AGATACCGGAAAaagctccaaccaaaaagaaatcaagaaagaaatcaact
tcaaagaaaacaccaaaagcaccaaagGGCTCTACAAAGTCAGCCTCTCC
AAAGAAAAAGTCTGCAAAGCGGGGTAACAAGCTTATTCCAAATCCTGACA
TCAATTTATTGGAGGAAGACCCAACATACTCCAAGGACAGCACGGTTCCT
CTGTCCATCGAGCGACAGGCTATTAAAGCTGTTATTACCAACGATGATGC
TTTATTGGAAGCTTTGCACAAGGATGGAAAGAATTGTTATACTTTATTCC
AGCAACGTAGCCCTCAAATATCACGTTCAGCTTACAAGTATGCCTTACTT
CAAGAGAACTTGGACTATTGCAAACTGATGTTAAAAGATAGAGATGAAGT
TACTGCCAAACCAAAAACTGTCGATTTGAGCAGAAAAGATACCGGAAAGG
GTGATTATAAAATGTTTGGACATGCAGTGCGTGAAGTTACTGTCAGTCGT
GGCAACCGAGAAGGAAACAACGCTTTTCTGGCGGATGAAGTTCAAAGAAA
TACCGATCATCTTTACGCTGTTTCCTTTTGTATCAAGAAGAATATCTCTA
TTGATTTCGTGAAgaaacatttgaaggcttttgACAGGGGGTGATTATAA
AATGTTTGGACATGCAGTGCGTGAAGTTACTGTCAGTCGTGGCAACCGAG
AAGGAAACAACGCTTTTCTGGCGGATGAAGTTCAAAGAAATACCGATCAT
CTTTACGCTGTTTCCTTTTGTATCAAGAAGAATATCTCTATTGATTTCGT
GAAgaaacatttgaaggcttttgACAGGGAACCTAGCTCATTGATTGACC
ATTTTTATGAAGCTGTTCAAACTGGTAATCGAGAGATGGCTGGTGAAATT
GTCAAAATTGCAATCAAGAAGGATGGATACGGTTTCAATTTCCTTCATGa
taatttgttgaatttcaCAAAAGAGAAACTGCCATCTTTCAAGGCTGCGT
CGGTTACCAAGAAAACCCATGTCTCTTTTTCTGAACCTAGCTCATTGATT
GACCATTTTTATGAAGCTGTTCAAACTGGTAATCGAGAGATGGCTGGTGA
AATTGTCAAAATTGCAATCAAGAAGGATGGATACGGTTTCAATTTCCTTC
ATGataatttgttgaatttcaCAAAAGAGAAACTGCCATCTTTCAAGGCT
GCGTCGGTTACCAAGAAAACCCATGTCTCTTTTTCTATTGCACCGATGTT
TTGCGCTTGTATCAATCCTAACGCCAAATACCTTCAAGAAGTGTTGAATG
TCCATGAtgacatcaatatgtcagacaACGCGGCGAACAGACCTATTCAT
TATGCTGCTGCTTGTTCAGGCCCTGGACCATTGAAACTCCTCATTTCAAG
ATTGCACCGATGTTTTGCGCTTGTATCAATCCTAACGCCAAATACCTTCA
AGAAGTGTTGAATGTCCATGAtgacatcaatatgtcagacaACGCGGCGA
ACAGACCTATTCATTATGCTGCTGCTTGTTCAGGCCCTGGACCATTGAAA
CTCCTCATTTCAAGGGGAGCTGACGTGACCATCCCGAACGGGCAAAAATT
GACACCACTCATCATTGCTGTCAAATGCAACCGTGTGGAAAACATTGCAG
TTCTGATGAGTTGCAAAGTGGCTCAGAATGAAGATAGTGATGATGGTGAG
GATGAAGAAGATGAAACTACTAGTGAAAAAGGGGAGCTGACGTGACCATC
CCGAACGGGCAAAAATTGACACCACTCATCATTGCTGTCAAATGCAACCG
TGTGGAAAACATTGCAGTTCTGATGAGTTGCAAAGTGGCTCAGAATGAAG
ATAGTGATGATGGTGAGGATGAAGAAGATGAAACTACTAGTGAAAAAGAT
AAAACTGACGAAGCAAACACACCAATGAAACCTAAGATCAACATCAACGC
TAAAGACAAGAAAACATTCACTGCTCTTCATCATGCAGCTAAACGTGGAT
TTAACATAAAACTGACGAAGCAAACACACCAATGAAACCTAAGATCAACA
TCAACGCTAAAGACAAGAAAACATTCACTGCTCTTCATCATGCAGCTAAA
CGTGGATTTAACGACTGCATTAAGGTATTGCTGGAACACAATGCTAATGT
CAATATCAAATCAAGTGCTGTTCAAGAGAATATGACACCACTTGGTTTGG
CTGCAGCCAAAGGACATTACGAAACAGTCAAATTCCTCCATGAAAATGGT
GCTAAACCTGACctgGACTGCATTAAGGTATTGCTGGAACACAATGCTAA
TGTCAATATCAAATCAAGTGCTGTTCAAGAGAATATGACACCACTTGGTT
TGGCTGCAGCCAAAGGACATTACGAAACAGTCAAATTCCTCCATGAAAAT
GGTGCTAAACCTGACctg
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049_pilon | genome | sc0000049_pilon:1617735..1624495 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1882-2034:6609 |
| Aaloc | 1777-1881:5703 |
| Aaloc | 1609-1773:5288 |
| Aaloc | 1444-1605:4425 |
| Aaloc | 1240-1443:3632 |
| Aaloc | 1051-1239:3038 |
| Aaloc | 616-1047:1822 |
| Aaloc | 388-612:1011 |
| Aaloc | 208-387:421 |
| Aaloc | 1-204:1 |
|
