|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000365_pilon:131074..134945+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_029664 ID=XLOC_029664|Name=XLOC_029664|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3872bp|location=Sequence derived from alignment at sc0000365_pilon:131074..134945+ (Clytia hemisphaerica_ch_hm2_pilon)
CAATCTCTGGTTTGGGAGTGTAAATTGTGTGATTACTATTCTTCTACTac
tttaaaatctctattgcgCCACAAATCTATTGTTCACAGAGCTGAAAACA
GCTTTTCTTGCTATTGTCCTGTTGAAgattgttttcgaaaatttgtTAAA
TATGACACCTTGTACCGTCATGTTCGGAAAGACCACAGTGCCACTCTCAA
GTTGGTGGCGGGGACGTCAACAGGAACAACAAAGGCACAGCAACCAACAT
TAGCAGAAGAACAGGCTGAAACTAGTAGTGAAGATACTGAACAGAGAGAC
AACATAGACAATCTTTATGAAGAGGGGGACCATGCtgatgatggtgacga
tgacgatgacgatgatgatgatgacgatgagGAGTTAGAGGTACAGTAGC
TTTGTGTAATGTTTACATTATACCAAGTATAGATGATTTGATATCTTTCT
CTACGTCTTTCCAGACTGTatagttttagagttttaagtttttcccaATA
GTTCACATGTATATGGTGTATctaatgtttttcaaaacaatagtGAAGTT
TACATTTCTGATGATGGAGTAGGGTGAacattttcaagcctttcctctgc
cttttaaagaaaattgggAATATACATAAAGAATCATTTTCTAATGAgat
ttccattttctttttttagaaagaagACAATATCCAGCAATTAATGGATT
TGCAGACAAGAAAATTAATTCTCCTTTTGAAAAGCCACAAAATTCCACAG
GTTAGATATAAACCTTTCTATTCTATTATGGTATGGATATTAgggatatt
tttttcaaggtaACAGCTTTCTTTTAAAAGACAAGTCAATCAGACAaagt
tataaataaaaaagacttATGCTGTAGTAATAAGTTATTCAATAGACTAC
AATTATATGTTTAGTCAacacaaaattgatttttgccaACATTTTTGTTT
GTTCAAAAGATCTAGAGACCAATTTGAAAACAACATAACATAATATATAA
TCTGCTATGAGGCTAGATAATTCTTGAAGTgacttttgatttattttggg
TTAaagtactgtaagttggtctaatggaCATCCCTCCTTCTTTAAATGTC
AACACCCTTCTTTGGAGATAGGAAGGTTGGAATCcctgatggaaactatt
ttttcttttcagcaaTCAAAGAGCAACAtatcttttgtctatcagtgatc
ccgaccttcctattatttctATTCGATCTGTAAAGAAGTGTGTCAGAAAT
ACTCCTTCAGGCAAATGTGACTTGAAATTTacctgagaaaaagaaaaaca
ctataTATACAGTAATAAACAAATTAATATTAGTAATTAGTCTTTTAATA
TACCAACGCAATTGCCTAAATTACTACCTAAGATACAATGCACTCTTTTG
AGTAGCTTGTTCAATTTTATTcactttaatatttttcagcatGTTATTGA
CAGTACAATCACAACAACATCATCTTTACTTGACACAACAATCAACTTTT
GTATGGGTTTAGTGAAGAAAGAAACAGACAAAAACATCTatcaaacaatc
tttgataAAAGCTGTGAAATCAGTAACCCATTCTCTGGTCTCAATACTAA
ATATCTTCAAGATAAATATCTCGATGAAGTTATTCGTCTCAAACCAGTTG
AAGTATCATTGGGAAAGTCTTTCAGATATAAAAGGTAGACTTTTCCACCA
TAATGCTAATAATGAGATCACTTTTGTTCATACTGATGATCTGCTCTTGT
TATTGCTACAATTGCTCGATTAAATGCCTACAACTTGATAGTTAGTATAA
GCCAGCAGTCCATTCTATAATTTTACATCTATTTAGAAAGCGAAATGGTG
AGAAAATATTGCAAGAGAAAGAAGACACGTTTGCCTACATATCCGTTCTG
GAAACCCTGGCAGAGATGCTTTCCCATGACGATATTGCTAAATTGCTTCT
AAAGCCTGTTGTAAAGAAGACAGCTGAAGGTAAGTCATAAAAAAGACCTG
AGTATAGCATTTTCACTtacagtttttttatttatcagcttttcttgaaa
ttcaaaaacgTTTTCCCTTTCGATTTTTAAGTCTTTATTAATGAAATTCG
ACCCTTTTAATTCAGGTGTTTATTACGATGTCCAAGATGGAGGCTTCCTA
GCAAATAAAGAAGCTGAGCAGAACAATCACCCTTACTTTTATATtctggt
gtttcaagatggatTAGAAATGTGCAATCCTTTGGGAAATCGTAAAGGAA
AACacaatttggtcaaattttactGGACATTGTTGAACTTTCCTCCCCGG
CTTCGCTCTAAACTGTCtgcaattcgaatgttttcttcaGTAAATAAAAC
CCTACTTTCAGAATATGGTTTTGACGCCGTTTTGAAGCCCTTTTTCGACG
AAATGAAAGCCCTTTTGGATGGAGTTGAGTTTATTATCAAAGGAGAGCCA
ACCAAATGTTTTGGGAGAGTGATTTTGTGCCTTGGAGACACCGAGGGCCA
ACATCAGATCAGTGGCTTTAAAGTTGGAGTGGGATTTTCTCTTAGAAAAT
GCAGATTTTGTTTTGCAACTGTCGAAGATGTCAGGGGAAATTTAGATCGA
GATTCCTTTCGTGAGAGAAACCTCACTTCACACCTTCGTCAATGCAAAGC
GCTTCAGGATGCCCCAAGTCAAAGAATTCGAGATGAAATAAGTACCACAT
TGGGAATAAATTATCTCTCCTGTTTGCATAATCTACCAGACTTTGATGTG
ACTAAGCAGTTCCCCCATGACATAATGCATGTTTTGCTAGAAAGCATCGT
CCCTTACGAATGTCAATTGGCATTGAGCGCTTTAATGGACCAGGGATTAT
TTAACCTCGATGAATTTAATGCCCAACTTGATAAATTTACCTTTACCCAA
AGTGATATGAGAAGTAAGCCAGAGGGTCTCAAAGCTTCTGTTTTTGTCAC
TGGGGAGAGAAAATTGAAGTACAGTGCTGAAAACTCTCgtatttttctaa
aagttttaCCTTTTCTTTTGGAGCAATTTGTTCATGAAGATGAtccattt
cttctttttcttttggaacTATGTTCAATTGTATGTATTGCGTATTCGCC
GGTTATAAACGATGGTCTTATTATTTGCTTGGAAGAATTAGTTGCAGaac
attatgaaaattttaatcaGCTTTTTCCTGAATTCCATTTGATCCCGAAA
CACCATTATCTTTTAGAGATTCCAAGGCACGCTTTTCAGTTTGGACCACC
TGTGAGGTGGAGCTGTATGCGATTTGAAGCTCTACATAAAAGATTTAAAT
CTTTTGCTCCTGTcgcaagttttcaaaatttgcctATGTCTTTGGCAAAC
CGATATGTCAGGTACGAGGCCATGCTACAAGATGGACCAGAACATCCCAT
ATTATCTTCATCTCGCATAGATGGCCCAGGGATAAAACTAGATGACTATA
AGGTGAACTTTCTTCGTCAAAGTTATCCGGCTTTGCCACGGTGTGAATCG
ATTTTTTCACTCAAGTGGCTTACCTTTTACGGTAATAATTTCACTGTCGA
TAAAAGCATCGTAGCTGTCGGGGCAGAGAACCTATCGCATCTCCCTATAT
TTGGAAAGTTGAGGAAAATCCTTTTATGTAAAGAAacgatatttttttta
attgatgaGTTGAAAACAAGCCATTTCGACACGAAGTTCATCGGATATTC
TGTTGTGGAAACAAATGAACAATCGATTTGGTCTGTAGATCAGTTGCTCG
ACTACAACGCTTATCAAATTGTTAAAACTATGTACAAGAAAAAACTTATT
GTCCCTCTAAAGTACGACTTGTCAACTATTATAGAAGAACACCTAAAAGG
TCATAACCCCATGCATGCATGA Coding sequence (CDS) from alignment at sc0000365_pilon:131074..134945+ >XLOC_029664 ID=XLOC_029664|Name=XLOC_029664|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5232bp|location=Sequence derived from alignment at sc0000365_pilon:131074..134945+ (Clytia hemisphaerica_ch_hm2_pilon)
CAATCTCTGGTTTGGGAGTGTAAATTGTGTGATTACTATTCTTCTACTac
tttaaaatctctattgcgCCACAAATCTATTGTTCACAGAGCTGAAAACA
GCTTTTCTTGCTATTGTCCTGTTGAAgattgttttcgaaaatttgtTAAA
TATGACACCTTGTACCGTCATGTTCGGAAAGACCACAGTGCCACTCTCAA
GTTGGTGGCGGGGACGTCAACAGGAACAACAAAGGCACAGCAACCAACAT
TAGCAGAAGAACAGGCTGAAACTAGTAGTGAAGATACTGAACAGAGAGAC
AACATAGACAATCTTTATGAAGAGGGGGACCATGCtgatgatggtgacga
tgacgatgacgatgatgatgatgacgatgagGAGTTAGAGCAATCTCTGG
TTTGGGAGTGTAAATTGTGTGATTACTATTCTTCTACTactttaaaatct
ctattgcgCCACAAATCTATTGTTCACAGAGCTGAAAACAGCTTTTCTTG
CTATTGTCCTGTTGAAgattgttttcgaaaatttgtTAAATATGACACCT
TGTACCGTCATGTTCGGAAAGACCACAGTGCCACTCTCAAGTTGGTGGCG
GGGACGTCAACAGGAACAACAAAGGCACAGCAACCAACATTAGCAGAAGA
ACAGGCTGAAACTAGTAGTGAAGATACTGAACAGAGAGACAACATAGACA
ATCTTTATGAAGAGGGGGACCATGCtgatgatggtgacgatgacgatgac
gatgatgatgatgacgatgagGAGTTAGAGaaagaagACAATATCCAGCA
ATTAATGGATTTGCAGACAAGAAAATTAATTCTCCTTTTGAAAAGCCACA
AAATTCCACAGaaagaagACAATATCCAGCAATTAATGGATTTGCAGACA
AGAAAATTAATTCTCCTTTTGAAAAGCCACAAAATTCCACAGcatGTTAT
TGACAGTACAATCACAACAACATCATCTTTACTTGACACAACAATCAACT
TTTGTATGGGTTTAGTGAAGAAAGAAACAGACAAAAACATCTatcaaaca
atctttgataAAAGCTGTGAAATCAGTAACCCATTCTCTGGTCTCAATAC
TAAATATCTTCAAGATAAATATCTCGATGAAGTTATTCGTCTCAAACCAG
TTGAAGTATCATTGGGAAAGTCTTTCAGATATAAAAGcatGTTATTGACA
GTACAATCACAACAACATCATCTTTACTTGACACAACAATCAACTTTTGT
ATGGGTTTAGTGAAGAAAGAAACAGACAAAAACATCTatcaaacaatctt
tgataAAAGCTGTGAAATCAGTAACCCATTCTCTGGTCTCAATACTAAAT
ATCTTCAAGATAAATATCTCGATGAAGTTATTCGTCTCAAACCAGTTGAA
GTATCATTGGGAAAGTCTTTCAGATATAAAAGAAAGCGAAATGGTGAGAA
AATATTGCAAGAGAAAGAAGACACGTTTGCCTACATATCCGTTCTGGAAA
CCCTGGCAGAGATGCTTTCCCATGACGATATTGCTAAATTGCTTCTAAAG
CCTGTTGTAAAGAAGACAGCTGAAGAAAGCGAAATGGTGAGAAAATATTG
CAAGAGAAAGAAGACACGTTTGCCTACATATCCGTTCTGGAAACCCTGGC
AGAGATGCTTTCCCATGACGATATTGCTAAATTGCTTCTAAAGCCTGTTG
TAAAGAAGACAGCTGAAGGTGTTTATTACGATGTCCAAGATGGAGGCTTC
CTAGCAAATAAAGAAGCTGAGCAGAACAATCACCCTTACTTTTATATtct
ggtgtttcaagatggatTAGAAATGTGCAATCCTTTGGGAAATCGTAAAG
GAAAACacaatttggtcaaattttactGGACATTGTTGAACTTTCCTCCC
CGGCTTCGCTCTAAACTGTCtgcaattcgaatgttttcttcaGTAAATAA
AACCCTACTTTCAGAATATGGTTTTGACGCCGTTTTGAAGCCCTTTTTCG
ACGAAATGAAAGCCCTTTTGGATGGAGTTGAGTTTATTATCAAAGGAGAG
CCAACCAAATGTTTTGGGAGAGTGATTTTGTGCCTTGGAGACACCGAGGG
CCAACATCAGATCAGTGGCTTTAAAGTTGGAGTGGGATTTTCTCTTAGAA
AATGCAGATTTTGTTTTGCAACTGTCGAAGATGTCAGGGGAAATTTAGAT
CGAGATTCCTTTCGTGAGAGAAACCTCACTTCACACCTTCGTCAATGCAA
AGCGCTTCAGGATGCCCCAAGTCAAAGAATTCGAGATGAAATAAGTACCA
CATTGGGAATAAATTATCTCTCCTGTTTGCATAATCTACCAGACTTTGAT
GTGACTAAGCAGTTCCCCCATGACATAATGCATGTTTTGCTAGAAAGCAT
CGTCCCTTACGAATGTCAATTGGCATTGAGCGCTTTAATGGACCAGGGAT
TATTTAACCTCGATGAATTTAATGCCCAACTTGATAAATTTACCTTTACC
CAAAGTGATATGAGAAGTAAGCCAGAGGGTCTCAAAGCTTCTGTTTTTGT
CACTGGGGAGAGAAAATTGAAGTACAGTGCTGAAAACTCTCgtatttttc
taaaagttttaCCTTTTCTTTTGGAGCAATTTGTTCATGAAGATGAtcca
tttcttctttttcttttggaacTATGTTCAATTGTATGTATTGCGTATTC
GCCGGTTATAAACGATGGTCTTATTATTTGCTTGGAAGAATTAGTTGCAG
aacattatgaaaattttaatcaGCTTTTTCCTGAATTCCATTTGATCCCG
AAACACCATTATCTTTTAGAGATTCCAAGGCACGCTTTTCAGTTTGGACC
ACCTGTGAGGTGGAGCTGTATGCGATTTGAAGCTCTACATAAAAGATTTA
AATCTTTTGCTCCTGTcgcaagttttcaaaatttgcctATGTCTTTGGCA
AACCGATATGTCAGGTACGAGGCCATGCTACAAGATGGACCAGAACATCC
CATATTATCTTCATCTCGCATAGATGGCCCAGGGATAAAACTAGATGACT
ATAAGGTGAACTTTCTTCGTCAAAGTTATCCGGCTTTGCCACGGTGTGAA
TCGATTTTTTCACTCAAGTGGCTTACCTTTTACGGTAATAATTTCACTGT
CGATAAAAGCATCGTAGCTGTCGGGGCAGAGAACCTATCGCATCTCCCTA
TATTTGGAAAGTTGAGGAAAATCCTTTTATGTAAAGAAacgatatttttt
ttaattgatgaGTTGAAAACAAGCCATTTCGACACGAAGTTCATCGGATA
TTCTGTTGTGGAAACAAATGAACAATCGATTTGGTCTGTAGATCAGTTGC
TCGACTACAACGCTTATCAAATTGTTAAAACTATGTACAAGAAAAAACTT
ATTGTCCCTCTAAAGTACGACTTGTCAACTATTATAGAAGAACACCTAAA
AGGTCATAACCCCATGCATGCATGAGTGTTTATTACGATGTCCAAGATGG
AGGCTTCCTAGCAAATAAAGAAGCTGAGCAGAACAATCACCCTTACTTTT
ATATtctggtgtttcaagatggatTAGAAATGTGCAATCCTTTGGGAAAT
CGTAAAGGAAAACacaatttggtcaaattttactGGACATTGTTGAACTT
TCCTCCCCGGCTTCGCTCTAAACTGTCtgcaattcgaatgttttcttcaG
TAAATAAAACCCTACTTTCAGAATATGGTTTTGACGCCGTTTTGAAGCCC
TTTTTCGACGAAATGAAAGCCCTTTTGGATGGAGTTGAGTTTATTATCAA
AGGAGAGCCAACCAAATGTTTTGGGAGAGTGATTTTGTGCCTTGGAGACA
CCGAGGGCCAACATCAGATCAGTGGCTTTAAAGTTGGAGTGGGATTTTCT
CTTAGAAAATGCAGATTTTGTTTTGCAACTGTCGAAGATGTCAGGGGAAA
TTTAGATCGAGATTCCTTTCGTGAGAGAAACCTCACTTCACACCTTCGTC
AATGCAAAGCGCTTCAGGATGCCCCAAGTCAAAGAATTCGAGATGAAATA
AGTACCACATTGGGAATAAATTATCTCTCCTGTTTGCATAATCTACCAGA
CTTTGATGTGACTAAGCAGTTCCCCCATGACATAATGCATGTTTTGCTAG
AAAGCATCGTCCCTTACGAATGTCAATTGGCATTGAGCGCTTTAATGGAC
CAGGGATTATTTAACCTCGATGAATTTAATGCCCAACTTGATAAATTTAC
CTTTACCCAAAGTGATATGAGAAGTAAGCCAGAGGGTCTCAAAGCTTCTG
TTTTTGTCACTGGGGAGAGAAAATTGAAGTACAGTGCTGAAAACTCTCgt
atttttctaaaagttttaCCTTTTCTTTTGGAGCAATTTGTTCATGAAGA
TGAtccatttcttctttttcttttggaacTATGTTCAATTGTATGTATTG
CGTATTCGCCGGTTATAAACGATGGTCTTATTATTTGCTTGGAAGAATTA
GTTGCAGaacattatgaaaattttaatcaGCTTTTTCCTGAATTCCATTT
GATCCCGAAACACCATTATCTTTTAGAGATTCCAAGGCACGCTTTTCAGT
TTGGACCACCTGTGAGGTGGAGCTGTATGCGATTTGAAGCTCTACATAAA
AGATTTAAATCTTTTGCTCCTGTcgcaagttttcaaaatttgcctATGTC
TTTGGCAAACCGATATGTCAGGTACGAGGCCATGCTACAAGATGGACCAG
AACATCCCATATTATCTTCATCTCGCATAGATGGCCCAGGGATAAAACTA
GATGACTATAAGGTGAACTTTCTTCGTCAAAGTTATCCGGCTTTGCCACG
GTGTGAATCGATTTTTTCACTCAAGTGGCTTACCTTTTACGGTAATAATT
TCACTGTCGATAAAAGCATCGTAGCTGTCGGGGCAGAGAACCTATCGCAT
CTCCCTATATTTGGAAAGTTGAGGAAAATCCTTTTATGTAAAGAAacgat
attttttttaattgatgaGTTGAAAACAAGCCATTTCGACACGAAGTTCA
TCGGATATTCTGTTGTGGAAACAAATGAACAATCGATTTGGTCTGTAGAT
CAGTTGCTCGACTACAACGCTTATCAAATTGTTAAAACTATGTACAAGAA
AAAACTTATTGTCCCTCTAAAGTACGACTTGTCAACTATTATAGAAGAAC
ACCTAAAAGGTCATAACCCCATGCATGCATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365_pilon | genome | sc0000365_pilon:131074..134945 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 862-2616:2118 |
| Aaloc | 718-858:1838 |
| Aaloc | 472-714:1440 |
| Aaloc | 391-471:670 |
| Aaloc | 1-390:1 |
|
