XLOC_029317 (mRNA) -

Overview
NameXLOC_029317
Unique NameXLOC_029317
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000391_pilon:235277..245883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029317 ID=XLOC_029317|Name=XLOC_029317|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10607bp|location=Sequence derived from alignment at sc0000391_pilon:235277..245883+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAATGAT CCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGAGTTA TTGGTCAATACATAAGTGCAATCGACCCAGGTATATAACATTTTTGGACT GACAAGGATATGTAGGGGGTGACAGATCTTGTTTCTGAACCTTTAGGATG ACtgaactttttgatattttaatacTTCCAAATAAATTTATATGGTTATA TGGGCTACCAGAATTCAACATAATTGCAAACTTAGTCTCAAGTTTCATTA ATTTATTggctttttctcaaaaaacgtgtttttttcatgttgtttttttt gacgTTACAGGTCTGTAATTTTCTGTAAGGAGCTTGCAATATGAAAGATT ATTGTTTTCTGTTTAGCCCTTTTACTAATGTATCTGGAAATGCATATTAA CACTTAGTTTCCCATAAGGAGTATAACTGACACTGCATTTTATGAAATTG TGGGTTTTGGGGTACCGCGTGATTTTGGGGTGCAACCACCTGTACCAAAG CCAAAGCAAAGGCAAGGGAGAGGGTTATCATATCCGAGAAAGTGCAAAAA TTAGGCACATGCAATATTTCAAATAGACGATTTTAAATACTATGTCTATT TCCAATATTTGTGTGTTCATTAAGTCTGCTAAATGACCTGCCCTACGTCA GCTTGGTAAAATCCGTGTGTTTtcatatgtaaacaaaagtACTTACACAT AGTTGTGACGTCGAAAAAGTCAAGGCTAGAGACAAAACGCTGAATGAcgg aatgccggaaccggaatagctgttccggccggaatagctattccgcggaa tatgatttttttttatattttgtattccgcggaatatgactttttttATT CCGCAGAATATGATTTTACTTAtatcatggatttatcatagaactctgga tacacaacgagctggtttttcatcgatttctcatgttctagccttgtccg cagtaatgacacattattgttcaccctcctccaTTCACTAATAATCTTTC GTAAATTTTGttattgcatttttcatcaaaacacagctctatacaattcc caaatgagacttaaacatctctcaagagagtcaaatgcatcaaattgatt gctaatgatatgtcgttatgatgtttcaagctgtgagaaagatgtgacaa acatgctatgtataagaaattgaatgttgacaccagaaaatttcaaactt ccacctcgccaaaaccaccgtgccaccgcgtgcctccaaaagattttcat atcactatgaagccaagatactccagtctaacatatgtcaatcctagctc ttcccaggaaaaaattggaaagatagATATTGCCAACCTTATTTTCAGCG TCATTCTAGGCTTTTTACtcgatttttcttgtttgatgaagtttttttca catttaatttcataaatgtattcgttaagctttcttgctttcattttcaa agttgcatccggtaaatatacaaaaacaagaagttacaggactttttaga aatgggattattaatcatttttcaaaatcagggaccttcgagccgccatg acagttgtcctttgcggacaaagctagaacatcaattgttttctaaaaca atggaaagacaatagttcgctctccaccgttttatttgatgtttatccag agttctatgataaatccatgctTATATCTTTTCCTCCATAATCACCTACA AGGTGATTATGAGGGCTGTAGTAGAGGCCTCAATTGGTCCAACCAGGGAA CTTCGCCTGACTGCTTAGTCGGCCTTGAGCAAGGTATAAATAGCCAGAAA AAGTCCCTGAAAAAGCACTCCATGGCCTCCATACATGCTCCACATCCACG GTTCGGGTCAAAGTCCCAATTTTTGACcagattttgataatttatgtttt tttgggtgtagattccaaaataaGTGGTCCGAAGTCCTGAAAAATTCATG GCAAGGCTCTAGAGGGGGGTCAGAACTCATCGTACCAGACCACCAGCTTG GAGTCCCCGCCGGTGGGGGATGGAAAGCAGTGGGACGTTTCTACAACTCG TGAACCACTTGGTGCTGACGCACATCTTCAGCCAAGTCTAAAACTAgtac atagcttacactaacatgccaccgcagcaatataatatttaaagaattct ataataaattgtataatcataacaatgtcaattgcaagattataagaaat gcatggggacaaaaaaatagtaagtaactacacgtttgcttaaacgaaga aataaaagattttcttttttcctgaaaataataacaataacactccatct aaataaataaaaacgatggcctagttataattaaggtttcgacgaagcaa gacatgaaaaaatctaattaaaaagaaatgactcttatgttttgcaagct aaagtttattccacttaaattggcattcatttttgctatcatgtggaaac catatcagagtaattagactactcgagtacctaataaacgtacagtagcg aataaacgtacagggtcgaaaatggaggcatgcaaacccggggggggggt actagggcaagatgggttacggggatgctccgctggtcagggtacctttt ctaacctccacgagtcccaggtagggtcgcaaaaacaccaaaatggaaaa atcattccctcgtagggtgcctttttttggaaaattttgggaaaaagtag aaaatttgagaaaattttggaatttcagtcccattcagggtcactttttt cgcaaatttcgagtcccacgtagggtccatttttcgaacctcagcggagc acccccgtcggttgacaagggtagtacccccccccgggtgcaaacctaat tgaaggatctttttaatgaggttagggggtaaatattgggtaatttgctt tcttttgacgagtagaacaaacctcaaaaatcaaagatggatatttatca ttagaaacaaaagtaggcacttgaaattgaggaaaatttttgttaaaatt aataaacgtacatgtacgtttattagagTATCCTCTTGAGAGTGGTTTGT ACatggtagcaaaacaaacttccaatttacatggaatagattttaaatgt aagacgggttcaagaaacgagcttgtcggaacaggttgacgagataaagc ttttaatgctttaaagattgaaacataaaaaataatcaggaataattaat tgatttgattattgattgatttaattactgattgattgattgattgattc tctattgctactttgcctaataaacaatagtcaagaggatactgcggata aaatttatcaaaaagttctgcgccatcttaaatagggcgaaatagaaacc aatcctagctaaggcccggactccactcgcctacgctttgattgtacttc tcaagcaaaatcttttatgttgttggtcaaaagaaaaataaagatatgcc attgtggtccattcagacgtacagtcgagaaaagttgaaatgcgcctaat tttttttaaagtgcatagtactttttcatgatacaatcttttctccaaac taaaagctgattgaatccattaagatgatcgcagcgcagacaatgaagaa acgtgccttcaggaagctagactttttgagtttatagctatatactttca ctttatggtgtttctgtatgactgtctgtgtgcctagtctaaccaccgtt aaatgccttcgggaaggtccctcctaacttggaaagccagaattggagct atttcaccaaactactggagcgcaagttattacgtaggctatcacaactg aaaaagttgaatgtatgcgcctatacaaacttttttcaggtttttcaaat agatttaccacactgaacaaacagtgaaaacactctaagtgaggtaaatc tattttgaagaccaaaaaaaaagtttgtttacatcgattcacattcaatt ttggattcatatgctacattctacttttttgtactttgccggtatcttgt tttaccgtttctgtatgactgtctgtgagcctagtctaaccaccgttaaa tgccttcgggaaggtccctcctaacttggaaagccagaattggagctatt tcaccaaactactggagcgcaagttattacgtaggctatcacaactgaaa aagttgaatgtatgcgcctatacaaacttttttcaggttttccaaataga tttaccacactgaacaaacagtgaaaacactctaagtgaggtaaatctat tttgaagaccaaaaaaaaagtttgtttacatccaaatagatttaccacac tgaacaaacagtgaaaacactctaagtgaggtaaatctattttgaagacc aaaaaaaaagtttgtttacatcgattcacattcaattttggattcatatg ctacattctacttttttgtactttgccggtatcttgttttaccgagttaa gaaagatattcccgagttacgaccatataatggtctttaaagcttaagaa gctctataaacaataaaggtagttattaataaaataacagacaatataaa ttacagtttgataagtttgaacaaaaatatcaacaaaatgtacatttgaa aacttgagcaaatttctttaaagattcccgaaaaagaattgaaatcattg ctgaaatgaacttctgactaaattacagtatttattcagttttaaagaca agaaacaaaattagacatacaaaacactttttccattcaatgaatcgaat cagctcatcatcataaccagtctgccattttgtttgttttgatttgcaaa agtaatattgtaatccttgttatggtgtaattatatactttttctataat ttgcatttataacactcgcttcagcttttcaatcctaaatcataactaat gaaatgcaatatataataacggtaatagcatataaacgtaatatgaaaat gtgtataacatttaccgctgtataatttaccgccatatttttgcggaaca cttaattggccggaacatacaatacgaacaaacgcgcgcaaagattcgag attcctgtccaatatccttgcgtgaagctatgaaggcctcctcactcgct acgctcgttgcgggggcaaaaatACTCTGAGGGGTCCCTATTAAGCTCTG GGCCAAGGCAAGCTAGCAAAGGTATAAGACCGCTGAGAAATAGAACTCCA CATAGATAAAGTTGGCCCAGTGGTTTAAGGTGTCGGGTTGACACACTAGG GATCCCCGGTTCGAAGCCGGTCaaagccaaatttaaaatttttatccagg ttttgatttttcatatttttttgggtgtagattccgaaaaaataggtccg aagtcctgaaaagttaaCGGAAGGGCGCTACGAGACCGTAAAGGACCCGT CCGGGACGGTAAATGACCCCTTCCCCTAGCGCCGGACTGGGTTGCAGGAC GGGGGTACAGACGATTGCCGGGTCGTACAGCGTTTTTAGCCGGTCAAATT TTCTGTGAGGTAAAATTAATCTAGTTCTATCTTAGTTATATGTAAGGGAA ACACTCAAGcataaaatcccaaacaacaccccgggaaaggtgtattcgaA TGACTTCACAagcgaaattttggacaagtgacgaatattttccccgacga aaattttccccggccttaatgcgttcaCCAACtgccagcaagtgacgaat ttttccctgacgaaaattttcaccgacgaaaattttccccgacgaagttt tccccgataagggtGAAAAAACAGCCAATGAGGTAGCCCGATTGCTGATT ATATGTGATTATGGGTGATTGATTATGGATGATTATGTACATAGATATAC CCTCaggggtgataaaagagaaagattattatattataatacgataataa aaaatcatattccgcggaatagctacattacaaaaaaaatatatctataa aaaaatcatattccgcggaatagctattccggcctattccggccggaaca gctattccggttccgTTATTCCGTCTTTCAGCGTTTTGTCTctagccaaa aagtcaaaacggTAGAGAACATCGTAACTTCCTTGTCAATTAAGTAgtac agttaggaacatttggcgagttcctgtacgcgaccgcaatcaaaaaaatc ataaaaaaattgtgtttgtgtctttttttaccgttttttgcctagaTGAT ATAggaaacatagtaagtataaggcAGACTACGCagtgcctttaattggc tgtaaaaaaattatgcgtcggtagaaatttcttcaactttcaacaatgat agaacacacctatttaaaaaaaattaaccagcgcattttttatctttcta cttcttcatcttccatgaagctctcaaagttaaatagaattaagcacata agatattcttataattgtgaaatgttGTTCCCGCTTtcgctacggtggag tgcatgacgtaactcgctcgccttctgttggctggtcatattgggcgttt tggcgttaccacctcGAAGTGGGCGCCTTCGTCATTCCGCAACTCTGTct accattttaaatgagttaacaatagatccaaaagggtgccctcatcaaga aagatcatttgctttggtctccggctttgggaagcaGTAATGTTTTAtga ttgttttcgatggaaaatggtaagaaacttaagtttacaagtgtcattca gTTTTTCCTGGCTGATAGAAtagcaggatcctggatggtttccctaacag TAGTATATATAACGAATCAATCGTAACAGGCATAGCAGGTTTTGTTTTCC CAGAGGAGAACTAAAAATGACACATCACATTTAATGTGTGAGTGACTTTT TTAAGCTAAATATTTCACATTTCTTTACATAATGGACATAATTCTGTAAc ttttttgttacattgttttaattgattttcagtTCATTTACTCCCAAGAT AATTACTTTGCACTTTTAACAACTTTCAAATCAACAGTCACTGTTTGTTA CAATCCATTGCACATCGTGTCTTTTAGACGATTCCTATTTCAGATAACTT GAGCTCCACCGCAGATGATTGAAAAAGTCAATTCTTCGTGTGCTTCAACT TCACAAACTTCGCCAATCCTGGTGGTGATAAGATTTATATGAGAGTAATC GTCACGAAAAGCGCtaataaaatatcgaaaaatggaGATTCCCAAGATTG GCGACGGCATCTTAAATCTTGGTTAAAGAAAATCTCTttgaactttcttt tttttcttttgttaattgctTGCGTCATTGATGACTTGCAAGGTATTTct caggccatattttagaaaggcaaggcagcgtccgttggtggccaaaaaag gcactttttccagtgttttccactaaaaaggctttttttacCAGTATTTT AGTCATTTCAAGAGGGGCAGCGCCCGATAACCGGACgcttaaagggcatg aaaaatggcctgttTCTCATAATGAAAACACACGGATTTTACCAAGCTGT ACGTGCCCTCATTGGTTTGACGTGCCTTTGTGGTGGCCCTACGTTCCTTA CTTACCTACGTGCTTGCGTGCCTGGCGTGCTCGCATGCTCGCATGCTCAC GTGTCTACGCGCCCTCCAAAATTTGACCTGCTTTACGTGCCCGAAGTTTT GACGTGtgctcaaattttgacgtgccctcgaattttggcATGCCCTCAAA TTTCAATGtaccctcaaattttgacgtgccttgCTTAAGTATTGACGTGC CTTCAAATTTTTACATgttctggaaatcaaaaatttgagggcacgtcaaa atttgagggcacgtcaaaatttgagggcacatgaaaacttgagggcacgt caaaacctgagggcacgtcaaaattcgagggcacatcaaaatttgatatg aagGCACGTCAAATTTCGGAGGGAACGTAAGCACGCAAGCAAATAGGCAC GTAAGGCACAAAGGCACATAGGGCACAAAGGCACTGATAAAAATGAGGGC ACGTGGGCACGTAGAGCacgtcatttaacagactcatGTTCATTGCagga aattgttatttttgttataaaagttattatgcaaaataaagaatcggttg gtctaaaaatattcttccaatATGGGGGTAACCTCAGAAAAATTATTATA TGATTATATGATTATATAACGTTATCATTATAAAAGTCTATGCTGGAGTa attaccgtgagattgggtaacttgcatcagtggaggctaacatgcatagc cctcaaatgaaagacctggttggtcattaaaatacaaagttaaatcaaaa caaaaatggtatcagtagagctgcgagcggagctgcatagttcatttgtt ttgaaattttgctgctttgattggtcagtcatttgatggctgtgcaagtt tccctccactgatgcaagatacccgacttcacggtagttattcaaaagac tgttgtTGACTATAATTGTACTGTTGCAAATATATAAACGACAGCCTACG TTAGCTTTGGCCAGGATGGAACAATCTCTCCACCCCACAAGGCCTACTTA GGCTTGTGAGAGATTATTTCATACCAGACCTCCCTAATTTcttgcttctt tcttctttttgactcagactccTCTAACagagaacttcctttcatgaaga cTAAATTTaataacagtgcttgaaaataatctacaatatatatgtaagcc ctCCTTTTTAAACTATCCCCCTTCCTTCCTATCTCCACCCTTTTTCATGA AAGtttctgatcccccttcttTATTCTTTTGGAAGGAATCGTCTGAACTA TGatgggaaagataaaagagaaaagattagcctagtttctaatcctgata tccTTTTGATACACCCTGAGAGCTGACAGTAAAGCTAGGCTAGACTTACC TCTTTTCTCCTTCCCATTTtaacaatagaccttttgctaggaTATCATGT TGAAttattaaaaactccagcatcaaaacaatgataagaaaaataCACAC TTGAATTAATTATGCAATAAAAATGTGCCATTGTTTTAATAAtgatggag tttttaattattcaacatgacatcctaaCCTGCAAAAGGTTACATACCTA TATAAAATGCTTACATTAGTGGACACATAAAACACATTAACAGAATTATT CCCCATTCAatatttatattgaaatctgcaataaaaatgaaaattgtctc TTCTAATCAGTGCTTCCGTTAGGCACTCCAtgggaaagtctttttttaat ttcaaccaatgagattgccaCATATGATGATGAAGGTTAACAACTAGCCC TAATTTTGGCGCTACGGCttttgcgtttttggcagaaactcactatttta attttatatgcagaatttttattttctgggCAGTTTCAAGTAGATATTAG ATACactcacaaaaaaaacaaaagaaattaaaaattttggggggaaTTCT GTGATATGATAAATGTAGTGCTAGAAGCCACACAAGGGTGTAATATCTTG CCTCTAATTTTCAGGAAGCGCAGCTGAGAAGTCTGGATTATGTGTTGGTG ATCGCGTTGTCGAAGTCAATGAAGTCAATGTTGAAGCAATGTCTCATGGA GAAGTGGTCCAACAAATCCGCACTGATCCTAAAAAAGCTATTCTTTTGGT AGTGGATAAAATCACTGATAACTATTTGAAAAAGATTAACAGACCTGTTA CATCTGCCCTTGCCACTTATACTACTGTTCATGAAATTACAATAGAAGAA GCTGAGAAATTACAGGAGTTGAGACTCCAAGctgaacaacaacaaaatgt tACTGATGATGCTGATGATGATGGTAATACGCAATTGAGtgttgaagatg aaaatgttgaaTTACAAGATTCAGATTCGTTACCATCAAATGGTGAAGAG CCAGAAAATGAGGCCCCTGGAGACACACCTGAGTCAGAGAAAATTTCATC TGTCCCAGGAGACATTGAATCTCCACCTCTAAATTCACATACATCAATCT CACCAGAACCAGAAGAGCCTACTAATCAAGATCCGCCACCTGAAGAATCC CAACCTGAAGAATCCCAACCTGAAGAATCCCAACCAGATGAAAATATATC ACAACCAGATGAAAACATATCACAACCAGATGAAAATATATCACAACCAG ATGAAAATATATCACAACCAGATGAAAATATATCACAACCAGATGAAAAT ATATCACAACCAGATGAAAATATATCACAACCAGATGAAAATATATCACA ACCAGATGAAAATATATCACAACCAGATGAAAATATATCACAACCAGATG AAAATATATCACAACCAGATGAAAATATATCACAACCAGATGAAAATATA TCACAACCAGATGAAAATATATCACAACCAGATGAAAATATATCACAACC AGAAGATCCAGATTATGCAATTCTAGAATCACCTCCCCCAGAAAAGAGAT CTGTGATAGAGTCTTCAGCAGAAAAGAGATCTGTGATAGAAGCACCGCAA GATGAACCAACAATGCTAGATTCTCCTCAACCAGAACGAGAATCTGCAGA GCCTGTT

Coding sequence (CDS) from alignment at sc0000391_pilon:235277..245883+

>XLOC_029317 ID=XLOC_029317|Name=XLOC_029317|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000391_pilon:235277..245883+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAATGAT
CCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGAGTTA
TTGGTCAATACATAAGTGCAATCGACCCAGATGGGTGAAGATGTTGGCTT
GGTCAAAGCTCCCAGAATTTGTGAAATGATCCGAGAGGAGTCGGGTTATG
GATTCAATCTTCACGGAGAAAAAGGAGTTATTGGTCAATACATAAGTGCA
ATCGACCCAGGAAGCGCAGCTGAGAAGTCTGGATTATGTGTTGGTGATCG
CGTTGTCGAAGTCAATGAAGTCAATGTTGAAGCAATGTCTCATGGAGAAG
TGGTCCAACAAATCCGCACTGATCCTAAAAAAGCTATTCTTTTGGTAGTG
GATAAAATCACTGATAACTATTTGAAAAAGATTAACAGACCTGTTACATC
TGCCCTTGCCACTTATACTACTGTTCATGAAATTACAATAGAAGAAGCTG
AGAAATTACAGGAGTTGAGACTCCAAGctgaacaacaacaaaatgttACT
GATGATGCTGATGATGATGGTAATACGCAATTGAGtgttgaagatgaaaa
tgttgaaTTACAAGATTCAGATTCGTTACCATCAAATGGTGAAGAGCCAG
AAAATGAGGCCCCTGGAGACACACCTGAGTCAGAGAAAATTTCATCTGTC
CCAGGAGACATTGAATCTCCACCTCTAAATTCACATACATCAATCTCACC
AGAACCAGAAGAGCCTACTAATCAAGATCCGCCACCTGAAGAATCCCAAC
CTGAAGAATCCCAACCTGGAAGCGCAGCTGAGAAGTCTGGATTATGTGTT
GGTGATCGCGTTGTCGAAGTCAATGAAGTCAATGTTGAAGCAATGTCTCA
TGGAGAAGTGGTCCAACAAATCCGCACTGATCCTAAAAAAGCTATTCTTT
TGGTAGTGGATAAAATCACTGATAACTATTTGAAAAAGATTAACAGACCT
GTTACATCTGCCCTTGCCACTTATACTACTGTTCATGAAATTACAATAGA
AGAAGCTGAGAAATTACAGGAGTTGAGACTCCAAGctgaacaacaacaaa
atgttACTGATGATGCTGATGATGATGGTAATACGCAATTGAGtgttgaa
gatgaaaatgttgaaTTACAAGATTCAGATTCGTTACCATCAAATGGTGA
AGAGCCAGAAAATGAGGCCCCTGGAGACACACCTGAGTCAGAGAAAATTT
CATCTGTCCCAGGAGACATTGAATCTCCACCTCTAAATTCACATACATCA
ATCTCACCAGAACCAGAAGAGCCTACTAATCAAGATCCGCCACCTGAAGA
ATCCCAACCTGAAGAATCCCAACCTGATGAAAATATATCACAACCAGATG
AAAATATATCACAACCAGATGAAAATATATCACAACCAGATGAAAATATA
TCACAACCAGAAGATCCAGATTATGCAATTCTAGAATCACCTCCCCCAGA
AAAGAGATCTGTGATAGAGTCTTCAGCAGAAAAGAGATCTGTGATAGAAG
CACCGCAAGATGAACCAACAATGCTAGATTCTCCTCAACCAGAACGAGAA
TCTGCAGAGCCTGTTATGAAAATATATCACAACCAGATGAAAATATATCA
CAACCAGATGAAAATATATCACAACCAGATGAAAATATATCACAACCAGA
AGATCCAGATTATGCAATTCTAGAATCACCTCCCCCAGAAAAGAGATCTG
TGATAGAGTCTTCAGCAGAAAAGAGATCTGTGATAGAAGCACCGCAAGAT
GAACCAACAATGCTAGATTCTCCTCAACCAGAACGAGAATCTGCAGAGCC
TGTT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_029317XLOC_029317-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391_pilongenomesc0000391_pilon:235277..245883 +
Properties
Property NameValue
Aaloc691-927:10371
Aaloc133-687:9567
Aaloc1-129:1