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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000384_pilon:147800..152229+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_027278 ID=XLOC_027278|Name=XLOC_027278|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4430bp|location=Sequence derived from alignment at sc0000384_pilon:147800..152229+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAACAACCCAGtttctttttctgattttggtgctgattttcaaat
tcaactgGGAGGTGAACTTTTTATTACCCTATTGGGAAGTACTGTCATTA
GGCTATACGACGCCCTCCAGCACGGTTAGCGAGAGGGCGGATTTGAGACA
ATAACAGAACAAGTACGTCGAACACATGCGAAGGAGTTCAACGCttgtaa
aaagaaaatgaaattagaaTTACAAATATCCtcttctgataagttcgaca
ttgGGCTAAAACCGCccataaagacttttttatacATAGGAATTGCTGAA
GACCTAAACCCCCCGTGGAGTGAtatggaaaatcttgatttccaATAACA
ATTGGTCAGTGTTCCTTAGACTTTTTTCTTTCGCAAACTGCCAATTTGGT
GTTGGAGAAATTCTGCAAATTAATAACAGTGATTTGCCTCAAAAACCTTC
TAACCTATTTTTGTCTTTTGATACAACCTCATAGAAATTGCTGGACAAGG
GGATGCAATTAAAGCAGGTGCATTTGGAAATTACATCATTACTGGCACAT
CGACAGTAAAAGGCTATTATAATTTAGACGGTGATTTCCAACTAGTTTTG
AGTGCTGATATGCCGGCACAATCGCACAATACTGTTTTCAAATATGCTGG
CACAAGAGCTCACTTTTTCGTTTCCTTGTAAGTATAAAAAGcagacgaga
tggagtttttataagatactttaatgatTAGtcaaaaatgacgcgttctt
tagaaaaagtagcaaatttttttttattactggCTAACAACCAACCAAta
aaataagagcttgtaaaaactccatatCGTCCCATAAAAAGACACCACAG
ACACGAGTTTTTCACAGTTCCGTCTGTAACTTCTTCCCGGGGATGGGATA
TTGGAGTTAGGTGAGGAgtacacgcttttctttttataagaatagtgtac
tttgaaTGAGGgccaagtattcttaagaaagtgtcGAAATTGaaggtgaa
atattcttaacgtattcttaataataataataataacgatATATTTCACA
GTATCTCCAAAGTTTTACAATTGGCTCTTCACCTGGAAATTGAGTatgac
aaatatatatgtagcgTaaaaaaaaTATGATGTTCATTAAAAATACTGAG
ACCGGTTGTAACTAGAGACTAGAAGGCTAAGAGTTGGTAAAGGCAAGTAT
GTTCGATCAAATACCGTTGTAGAGTAGTATGAGTTTGGCAAAAGTAGATT
GAGTGAACGTAGTACTAGTCGCTTGTGCAAGACCGGTGTAAAACCAAAGT
TTGAATTTAGATTAAGCTATAAAATACTACAAAACTGATACAACTATTGA
TAACAACTAATAGAACTAATTCCTCCATGGACAGTAAAATAAAGCACCtt
tttttATATGAGCGTTCCATTTCATATCCTCACTAAACGTTATACCGAgg
agtttgaatgttttgacaCGTTCGATGtttttttCGTCAAGCGATTTTAT
CTCGTATTCAAACTGGTGTCGTCTGGCCATTTGTTGTGTCGAGAATAGCA
CGGTTTTCGTCTTTTTCGAATTGAATAGAAGATTCTGGGTTTTCGACCAT
CTCTGGAGATCTTTGATGTCATTGTCGATTTTTTCAGTACACTCTACGAA
GTGTTGGGGTCTTGTGTGACGATACAGGCTGGTCTGCATATTGCATACAC
TCCGCATCAGTATTTTTTGACATGTCATGAAGGTAGATATTAAATAGAAC
AGGGTCGAGGATACTTCCTTGGGGAACACCATTCAGTACGGTAAGTCTTT
TCGATTCCTTGTCATTGATCTGTACGAATTGTAGACGGTTTGATAGGTAA
CTTGCCATTAGTAGTAATGCAGACTTTGAAAAGTTAAGTTTATGAAGTTT
TTCAATCATTATTTCGAAATCGACTGTGTCAAATGCTTTCGAGAAATCAG
CCATAACAGAAAGAGTGACCTCACCACTATCCATCGCCTTGATTATATCA
CTCTTGATTTTCATACATGTTGTGATCGTACAGTGTCCTTTTCGAAATCC
AGATTGGTGGTTGGATAGAAGTTTACGGGATTCGATGTGATCGACCATTT
GAAGCATTAGAATTCTTTCGTATACTTTTGAAAGGATTGGCAGAATGGAT
ATCGGTCGGTTATCTGACGGTTCACTTGGTTCATCGACTTTCGGAATAGG
CGTGATCTTCGAGATTTTCCATTGGTTTCGAAAAGCATTCTCCTCGATTG
CAGTCTTTACTATGTGACAAATTGGACTGGTGATTTCGTTAAtacaaagt
tttaagaatttcgAAGGTATCTTATCTTGTTCGGTGGAGCAATCATTACG
GAGTGAGAGGATTGCTTTTCTTACGTCCGAGTAGGTGGGTTTAGAGAGGC
TGAATGTGTTCGGATTATCAGGAAGTGTATCAATCAAGTTTCGCAACGTT
TCTTCAGGCTTTAGGTACAGAGTTCAGTAGCCTTACTGCGGTTGTGTTAT
AATAAGTGCGTTTGGGTCAGCGTCGATACTCTTTGGGTTTGGATTTAAAA
TCCGGTTTGAGGCGATATGGTCTATTAGCGTACGGCCATGTCTAGTAGGT
TTGGAGATATGTTGATCGAGACCATGGTTGCGTAAAAGTTCTTTATATTC
TTGTGCGATCTCTGAGTTTTCTATCAAATCAATGTTAGTATCACCGGTGA
TGACTATAGGGCCAGTCCAGATTTTTGAAACGTAAACAAGCAGGGTATCG
AGTTTGGTCAGCCACACACGCTTATCTGCTAGGGTAGGACTTGGTTGATA
CAAAGCAGCTAGGAGAAAAGAGTCGTGTTTACCTTTGATCTCCATCCACA
TTTGTTTGATTGAAGTGTCTTTTTCGGTGATATTGTcccttattttgaat
tttacggACTCGTGTATATACATGCCAACACTGCCTCCGCGTTTTTTAta
tcggtgacggaattttgggaCGTAGCCGTCAATGGAGACATGATGGAGAA
GCTTCGGGTTGTCCTTCAGTCAGGTTTCGGATAATGTGATGATGTCATAT
TTGTACGTCCAAACCATTCATTCAAAAGCAGAAAAACTCTTAccttttta
gacttgacttttctacaaacatgagaaatgatcaatttgagagttttgga
cttttgagtgaacatttgggttaaaattacatttcttcctcaaagcttca
attcatctctaacaaaggaagcagtattttctgttaaccaaatacaaaat
gactgtattcttatcaaattctgtaaaattcaccctagagggtaatATTA
GGGTATttttacgatttggccaattttcaccctgatattcttatagaaga
tattcttataaaagaaaaagcgtgtatgtacAGTTTGCATGCATGGCCTC
CCAAAACCCAGTCTTAGAGAGGCAACACCTGCATCAtctattacaatttt
ttctctgaaaaagaaacaaatgttCATAAATTCGTTAGTTGACCAACAGA
CCCTTCGAGAGGCTACtttaagaaattttaatttttgtaaaccTAAGAGA
TATTTTAGAAGGTTAAAAACTTAACCCTTATCATTCACATATACCAAGCA
CCCATTTGGCCCTAAGTACACCGCTCGTTTTGTTTGCAAGTATTCCTCTC
CCCAGGAATCGTGCGTTATTTTTAAGATTGATTGATTAGGTCTTTGAAGT
GAATGATCCGCCAATTTTGTCACTTTTACCACAGTGGTAGACCCAGTTCA
ATCTGAACAAGCAACAAATATAGCGGGAAACGAGAGGCgaaaaaatgttc
ttgattGATCAAATTACCAGCGCTGAACTGTGGTCTACCTATTAAAGATG
gcgaattattttgctgtaagcACCTCTGTAACTGTTAACTCCACCCCGGG
CTAACCTTCATTTTAAAATGTATCCCGTCTCCCTTAAATTATCCCCCTTT
TAGTGCCCTTGTGCAGACAATAGGATCGTATGCTTTAGATATACGAGTCT
TACCAAGAAAGAGAAACTCAGGGCTTATGTTACCCCCTACACTACTATTG
ATAAACTGATGGACGTATTGACTGGGGATGTAACCGAATCCTCCAGTTTT
ACAGCACTGGCTTCTTTACGTCGCAGAACCGTTAACGGCCCTGGCTCGTG
AGAGTGACAGAAACTTGTCAATGAAAACATTCATAGGAAGTTGAAAATTT
GATCATGAAAATTTCTTGCCATATTTATACATTTTAGTATGACTGTTAAC
GGAAAACGATCTACGGCACCAAAAGGCGCAAACATTTTCGAATTACCAGC
AAGAAAGAATGTGATCGAAATATTAAATACTTTATTGACATTTCGTGTTG
GTCTAGGTCGCTTACCAATGTTGAGAAGAATCCATAACAAACCATATTGT
ATTATCGCTTCTAAGATGGAAATTAAGTAA Coding sequence (CDS) from alignment at sc0000384_pilon:147800..152229+ >XLOC_027278 ID=XLOC_027278|Name=XLOC_027278|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000384_pilon:147800..152229+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAACAACCCAGtttctttttctgattttggtgctgattttcaaat
tcaactgGGAGATGAACAACAACCCAGtttctttttctgattttggtgct
gattttcaaattcaactgGGAGAAATTGCTGGACAAGGGGATGCAATTAA
AGCAGGTGCATTTGGAAATTACATCATTACTGGCACATCGACAGTAAAAG
GCTATTATAATTTAGACGGTGATTTCCAACTAGTTTTGAGTGCTGATATG
CCGGCACAATCGCACAATACTGTTTTCAAATATGCTGGCACAAGAGCTCA
CTTTTTCGTTTCCTTAAATTGCTGGACAAGGGGATGCAATTAAAGCAGGT
GCATTTGGAAATTACATCATTACTGGCACATCGACAGTAAAAGGCTATTA
TAATTTAGACGGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCAC
AATCGCACAATACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTC
GTTTCCTTTATGACTGTTAACGGAAAACGATCTACGGCACCAAAAGGCGC
AAACATTTTCGAATTACCAGCAAGAAAGAATGTGATCGAAATATTAAATA
CTTTATTGACATTTCGTGTTGGTCTAGGTCGCTTACCAATGTTGAGAAGA
ATCCATAACAAACCATATTGTATTATCGCTTCTAAGATGGAAATTAAGTA
ATATGACTGTTAACGGAAAACGATCTACGGCACCAAAAGGCGCAAACATT
TTCGAATTACCAGCAAGAAAGAATGTGATCGAAATATTAAATACTTTATT
GACATTTCGTGTTGGTCTAGGTCGCTTACCAATGTTGAGAAGAATCCATA
ACAAACCATATTGTATTATCGCTTCTAAGATGGAAATTAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000384_pilon | genome | sc0000384_pilon:147800..152229 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 256-447:4239 |
| Aaloc | 64-252:487 |
| Aaloc | 1-60:1 |
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