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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000498_pilon:126904..130283+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_027082 ID=XLOC_027082|Name=XLOC_027082|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3380bp|location=Sequence derived from alignment at sc0000498_pilon:126904..130283+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTATTCATTCTTAGATTTAACATGTCAGATAATCTAAAAACTTTACT
GGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCCTTCAATGAGCAAAATG
TCAAATTTGAAACTATCTCACACCTTAGTGACATGGATTTGGTAAGGTTG
GGAATTTCAACTGTTGGCGACAGGATAAATTTCAAACGAGTGTATAGATC
AATGGCAACACAACCCACCAATGTAAGAAATCTTGTAGCTGATAGAGTAC
TGACAGAACGTTCGGTCGCCTTTCAACCATACAGTAGTgagaggaaaaga
agaaaaaccggagataaaaataaaagtgttgCACAACCGTGGACAGCAAA
CTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAAGTTCCGAAtgcaaatg
aaaaagttttgctTTTTAAAGCGAATCTTGGGTTAAAAAAGATCAAGCTT
GACCTTGGAAATTCAGAAGAAGTTGTTAAAGATGTTCTAATTGAGAATTT
CCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTGCTGAGGTGTATGGCCA
ACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCTGGCAGCAAAAGATATT
AAAGCATGCATTGGAGGTGGTCAAGCTAAAATCTACATACGGCCAATCCA
ACATGACTTATCATTGCTGGCCGATGAAAACTCACAAACAACTAGTTCGT
CATcatcaataaaagaaaaatgtaagGTGTGTCAAACTTTGTTTTCTATC
AGCACACTCCGTGAACATTTGAAGCAGTGTGCCTATGAAaacattgatga
tgatgaagatgataCATTGTTTGAATACAGCTACAGAGAACTAGGATCAA
TACGACCAAACTCACCAACACCACCTAACTCACCAACACCACCCAGGACA
AGAGAGCAACAGTCACCACCCAACAGTACAACAGAGCAAGACCTGACCCC
CAGGACAAGCGACCCCTTCTCAGCTACTGTGACATCAGAGAGAGAATTGC
CAAACAGGACAACTGGAGAAAATTCATCAACCAGGGCCGTAGAGCAAGAT
CCACAACATGAGACAGCCCCATCTGACCAGGCTTTCAATATTGAAATTAT
AGATGGGCCTCGTATCAAAATTTGTGACCCTCCTAGAGAGATTGTAATAG
ATACAGAGATAGTGTCAATCCTAGCTGACATTCACAGTAATGAAACAATA
AAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTCAAAAGAGGTTGATTCA
GGGGAGAGACTTGGAAATCATGGACCCTGCTGTTGTATGCCAAGGAGCTA
CAAACTTCATCATGGTAGACAGAACAGATATCTTGACCACTGCCTTTGAT
GAAATATCAACCACCATAAAGCCAACCAACCGATTTGTTTGTTTAGAGGT
TGAATTTTATGGTGAGGtatgtaaaacatttttttttatctttaagtTAC
GTCAAGAGCAATTGTCTAATAAAtatattaccttaagggaagaaattttc
gcgggaatttaatttcgcggttggttaaataattttttttcgcggaaatt
taatttcgcggttcatcgattttcgaaaaattcgcgggaatttaatttcg
cggttgcaggatatcTTTGACCAAAAacgttattaaataagcaaaaaacc
tgttttaaggcttgaaattgtacgaatttgggggaatgcgtgaaataaat
taaatttcgcgggaattaaatttcgcggtttgaCGATcttgtaaaatttc
gcgggaacttaatttcgcggttttaggcaaaatccgcgaaaaccgcgaaa
ttttgttcccgcgaaaatttcttcccttaaggtatatataTAAGTATCTG
AAATATTGCAATAATAATGGAAAGTAAGAAAATTACTTAAATACTagtct
ttcaaatttttttaatgtacTGCCCTTGATTTTCCTTGATCATTGAGCAC
CTttaagctaaggctacactagACACTTTTTCGTGCGCTTGCAACGCAAC
ATCTGCTGCATTGCAAGCGCACGAAAAAAGTCGAGTTTAGCCTGTTGAAA
TTTTCTGCAATTTTCACTGCAACACaacaaaaaacttcaaaaaaatgttg
caaGGCTATGCAACAAAATAGATCAGATCTATTTTGTTTCAGGGCTTCTG
CGACAAATATCAATGgattttcttctttctgtttACTTTTCTGCTTCCGT
TCTTTTGTTAAACCACTCGAAgtgaattttttctaaaaaatctctcttga
tttattgaaaattgattcgaatttttttttaccccTGGCTAGACCACCAA
TATTTCCAGGCGCTTGCAAGTTTGCTAATTGAAGTCTGCatgtaattttt
agttttttcaggTTTCTAGGACCTTAACCCTTAAAATGGTAAATCGATAA
TAAATAATCAACCAATAAAATATTAACTTTCACTCTACCGTTTTAGCTCG
CCGAAGATCTAGGGGGACCAAGAAGAGAATTCTTTACCCTGGCTTTGAGG
CAAATACAAAAAGAGTATTTTGAATCAGAGAATGATTTGCGTGAATCACC
CCATTATTACAACATCGGTGTTGTGTTTGGTAAGTTCCCTCAACCTATAT
CCCAcagttttttaattattatatACTTACCAAATTTTTACTATGCTATA
GATGGCGACGaaaatcatttcatttaaatttaATGCACAAAGGTTCCATT
TATATTAGGGGTGATTTTTGGAAGTTTGTGGTTTTCTTTACAGAGAAGTT
TTGTTTGGGATTGAACGTCCCCGTCCATCGTCCCCATAGCCGATTTTGCA
AAAGtataaaccccgagaatgtcaTTTTTCATCTAATTATACCTTATTCT
TTTACCTTGTaggtactaattttcgcgcGTATTAATTTTGGCGCACAAAG
GCTtcctatatatttttttctaaacatataaataaaaataaagacatttt
taaagataataatgccactttctttccaaaaataaaaacaaaaagaatac
gGTTTTAAAATggtattaattttcgcgcactGACTGCGCATAATTTCGGT
ATTCAATTTTGCACATTTTTGGGCCTCTGTGCGAAAACTAGTACgcgcga
aaattagtaccttTAAGGGgatatttttaatgaatttacATACGGTTGAG
AAATCTTTATTACCTCGTTAACTTGATAGTTGTTTATAAACTTGTTTTTG
TATTACCTTTCAGCTTTGAGTATTCTACAAAACGGTGGATTCCCCATGTT
TTTCGGCGAAAATGGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAAAAT
CAGGATACCAAGAAATACGGACTGcattcaaagattttggtttgTTTCAG
GTAActgttcaattttgttttgttccgtAA Coding sequence (CDS) from alignment at sc0000498_pilon:126904..130283+ >XLOC_027082 ID=XLOC_027082|Name=XLOC_027082|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3432bp|location=Sequence derived from alignment at sc0000498_pilon:126904..130283+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTATTCATTCTTAGATTTAACATGTCAGATAATCTAAAAACTTTACT
GGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCCTTCAATGAGCAAAATG
TCAAATTTGAAACTATCTCACACCTTAGTGACATGGATTTGGTAAGGTTG
GGAATTTCAACTGTTGGCGACAGGATAAATTTCAAACGAGTGTATAGATC
AATGGCAACACAACCCACCAATGTAAGAAATCTTGTAGCTGATAGAGTAC
TGACAGAACGTTCGGTCGCCTTTCAACCATACAGTAGTgagaggaaaaga
agaaaaaccggagataaaaataaaagtgttgCACAACCGTGGACAGCAAA
CTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAAGTTCCGAAtgcaaatg
aaaaagttttgctTTTTAAAGCGAATCTTGGGTTAAAAAAGATCAAGCTT
GACCTTGGAAATTCAGAAGAAGTTGTTAAAGATGTTCTAATTGAGAATTT
CCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTGCTGAGGTGTATGGCCA
ACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCTGGCAGCAAAAGATATT
AAAGCATGCATTGGAGGTGGTCAAGCTAAAATCTACATACGGCCAATCCA
ACATGACTTATCATTGCTGGCCGATGAAAACTCACAAACAACTAGTTCGT
CATcatcaataaaagaaaaatgtaagGTGTGTCAAACTTTGTTTTCTATC
AGCACACTCCGTGAACATTTGAAGCAGTGTGCCTATGAAaacattgatga
tgatgaagatgataCATTGTTTGAATACAGCTACAGAGAACTAGGATCAA
TACGACCAAACTCACCAACACCACCTAACTCACCAACACCACCCAGGACA
AGAGAGCAACAGTCACCACCCAACAGTACAACAGAGCAAGACCTGACCCC
CAGGACAAGCGACCCCTTCTCAGCTACTGTGACATCAGAGAGAGAATTGC
CAAACAGGACAACTGGAGAAAATTCATCAACCAGGGCCGTAGAGCAAGAT
CCACAACATGAGACAGCCCCATCTGACCAGGCTTTCAATATTGAAATTAT
AGATGGGCCTCGTATCAAAATTTGTGACCCTCCTAGAGAGATTGTAATAG
ATACAGAGATAGTGTCAATCCTAGCTGACATTCACAGTAATGAAACAATA
AAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTCAAAAGAGGTTGATTCA
GGGGAGAGACTTGGAAATCATGGACCCTGCTGTTGTATGCCAAGGAGCTA
CAAACTTCATCATGGTAGACAGAACAGATATCTTGACCACTGCCTTTGAT
GAAATATCAACCACCATAAAGCCAACCAACCGATTTGTTTGTTTAGAGGT
TGAATTTTATGGTGAGATTCTATTCATTCTTAGATTTAACATGTCAGATA
ATCTAAAAACTTTACTGGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCC
TTCAATGAGCAAAATGTCAAATTTGAAACTATCTCACACCTTAGTGACAT
GGATTTGGTAAGGTTGGGAATTTCAACTGTTGGCGACAGGATAAATTTCA
AACGAGTGTATAGATCAATGGCAACACAACCCACCAATGTAAGAAATCTT
GTAGCTGATAGAGTACTGACAGAACGTTCGGTCGCCTTTCAACCATACAG
TAGTgagaggaaaagaagaaaaaccggagataaaaataaaagtgttgCAC
AACCGTGGACAGCAAACTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAA
GTTCCGAAtgcaaatgaaaaagttttgctTTTTAAAGCGAATCTTGGGTT
AAAAAAGATCAAGCTTGACCTTGGAAATTCAGAAGAAGTTGTTAAAGATG
TTCTAATTGAGAATTTCCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTG
CTGAGGTGTATGGCCAACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCT
GGCAGCAAAAGATATTAAAGCATGCATTGGAGGTGGTCAAGCTAAAATCT
ACATACGGCCAATCCAACATGACTTATCATTGCTGGCCGATGAAAACTCA
CAAACAACTAGTTCGTCATcatcaataaaagaaaaatgtaagGTGTGTCA
AACTTTGTTTTCTATCAGCACACTCCGTGAACATTTGAAGCAGTGTGCCT
ATGAAaacattgatgatgatgaagatgataCATTGTTTGAATACAGCTAC
AGAGAACTAGGATCAATACGACCAAACTCACCAACACCACCTAACTCACC
AACACCACCCAGGACAAGAGAGCAACAGTCACCACCCAACAGTACAACAG
AGCAAGACCTGACCCCCAGGACAAGCGACCCCTTCTCAGCTACTGTGACA
TCAGAGAGAGAATTGCCAAACAGGACAACTGGAGAAAATTCATCAACCAG
GGCCGTAGAGCAAGATCCACAACATGAGACAGCCCCATCTGACCAGGCTT
TCAATATTGAAATTATAGATGGGCCTCGTATCAAAATTTGTGACCCTCCT
AGAGAGATTGTAATAGATACAGAGATAGTGTCAATCCTAGCTGACATTCA
CAGTAATGAAACAATAAAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTC
AAAAGAGGTTGATTCAGGGGAGAGACTTGGAAATCATGGACCCTGCTGTT
GTATGCCAAGGAGCTACAAACTTCATCATGGTAGACAGAACAGATATCTT
GACCACTGCCTTTGATGAAATATCAACCACCATAAAGCCAACCAACCGAT
TTGTTTGTTTAGAGGTTGAATTTTATGGTGAGCTCGCCGAAGATCTAGGG
GGACCAAGAAGAGAATTCTTTACCCTGGCTTTGAGGCAAATACAAAAAGA
GTATTTTGAATCAGAGAATGATTTGCGTGAATCACCCCATTATTACAACA
TCGGTGTTGTGTTTGCTCGCCGAAGATCTAGGGGGACCAAGAAGAGAATT
CTTTACCCTGGCTTTGAGGCAAATACAAAAAGAGTATTTTGAATCAGAGA
ATGATTTGCGTGAATCACCCCATTATTACAACATCGGTGTTGTGTTTGCT
TTGAGTATTCTACAAAACGGTGGATTCCCCATGTTTTTCGGCGAAAATGG
TCTTAACGAAATTTTCTCTTCGGAAAGCCCAAAATCAGGATACCAAGAAA
TACGGACTGcattcaaagattttggtttgTTTCAGGTAActgttcaattt
tgttttgttccgtAACTTTGAGTATTCTACAAAACGGTGGATTCCCCATG
TTTTTCGGCGAAAATGGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAAA
ATCAGGATACCAAGAAATACGGACTGcattcaaagattttggtttgTTTC
AGGTAActgttcaattttgttttgttccgtAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000498_pilon | genome | sc0000498_pilon:126904..130283 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1552-1716:3216 |
| Aaloc | 1417-1548:2447 |
| Aaloc | 1-1416:1 |
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