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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000067_pilon:383122..388456+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_025833 ID=XLOC_025833|Name=XLOC_025833|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5335bp|location=Sequence derived from alignment at sc0000067_pilon:383122..388456+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCGATGCaagtgattttttgaaaattgaaaatcaaaatgagaaGAC
TTTGATTGAAATGGCACTTGAGGATGGGGATGATGAAAAACAGGAGAAAC
CAACAGACGAAAAGaatagaaataaagaaaataaggTTTATATTTATTAT
TATGAATCTACGGTGGCTTCTGTCCGCCATTTGGgttacttttttccaaa
aagaacaagtcaacaatttttttgtcgAGATAAGCAGGTCTTAACTGAGA
AATTTCTGAGATAACCACGCTTATCTCATCAATTTCCTATTTAGCTGAAG
TTATCTCGACAAATTCGGACTTAGCAAGTGTTATTTCGACAATTTTCTAC
TTAGCTGAAGTTATCTCGAGGTTTTCGACGCCTAGCGTCGATGATCAACG
ACTAAACTACGCAGATGTCCCCGAGCGACGGATAATGGGTTAGCAGTGGA
AGAAGTTCCACCGAGGCTGTAGAGACGGGTGATAAATTGATGATCTGTTT
TTGGCAAACTCAAgattttcatgtatgaaattttaatatttttagatGCC
AGTATCTTCACAAGAGAACATTGATTCCTTGATGGAATATAAATATAAAG
TTGAACGACTGTGTGGTATACTTGGTCAATTTCAAGAACAACATCATGAA
GTTGTCAATAATTATCAAAAAGTAATCAAAGGTAAAATTTTCCTTACTGT
TCCCGAATTATTATCCCTACAGAGCGGATTCAAACAGTGTGAGAGAAATG
ATGAATCGGATTTCCAAATTGGATGATCGAGAGACTAAAAAcccatcaaa
acaaaactttttttgtgaaaaaaaggGTTCAGATTCCTTTGTTAATTTTC
Atgcatgaaagatttttttaaatagaagtgaatctcataaaaactttgaa
acacatgaaaaaattctctcataACATCAGAACATTAAATGAGTGTGGTG
TTGTGAGAGAAATtcgtttttgaccattttttgaacagttgaaagttttt
aaacatttataaatttgaagatgaaggGTTTGCTTTAACGATAAGTAAAG
TTCAATGGATGGTGTGCAGCGACCTTGCTAATGTAAGTATAAAGATTACC
TGTATATTATTCAAAACTAATGGTGCACTATATGAATGTAATGAATCTTG
TTTGTGATTATACTAGTCTGCGACAGCATGATGAGTTTAGGTAGTTTAAG
TTAAACCTGGTGTGAGTACGGATACAGATTTTCTTTATCTGCTAAAGaac
ttttaagaatatttacTTTCAATGTTACTTACAGTTATTTTACTGTTACT
TTCAATGTATCAGATTAATGGAgtttagttttaaaatttcttgaaattca
tAAGCCTTATAGGCatgaacttttcaaatttcattgaaaatgtgtTTTGA
ATGGCCATGTGGTTAATACTAGCAACTTCTATGAAAGTATActttattta
tacttttttgcagTATATATGAAGTACACTTCCATgcagtatacttaaag
tatatggaatattgttccaaaaatttagtacttaaagtatacttcctaaa
acatcaaaatatatactgaaagtatacttttaGTACTTCTGAAAGTATAC
TTGCAGTACAGAATAAcatatacttaaagtatactgaGTTTTGATAAGGG
AGTTTCTACCTGGATTCTAAAACTGATAAATAACTTGTGTGATTTTTTGG
AAAGGCGACTTggatcattttattttcaaaactctCTTGAGCTTGTTGGG
GGAAAGCTACTATTGATGGGTATAATAAGGTAGTGCCCAATcgatttaat
tttttccttaaaataagGACTTTCATACCGTTACTTGGTACTCTGATGTG
GAAAGATGGCACTGTAGTATTTTCCTAAATAAAACTCTGTACTTTAAACT
AACTCTTTCTACAAACGAAAAAACAATGCCATTTAGAGATATTATTTTTG
AGATATAAAGAAAGGAGATGAGTGGCACTCTGCTGGCTAAGCAGATTAAA
GAAAAGAATTAACTCTTGTTTCAAAAAtgatgtgtaagcaaatggtagga
gtTAAAAGATGTCCtttaaaaaagtaatattcttttagacaagtaaaatt
ttatttaaaaaaattttttttttaattttacttgtCTAAAAACAACATGG
CGATATCTCACtcaaaaaaagtaataattgTAATGTTTGAATTTCCTCTA
ttttttttCACAGAAAACAAAGAATCAAGGGAGAAATTGAACCTAACACT
TTTCGAATTGGAATCCGATAAATACCTACTGCAGCAAAATGTTCAAGAAC
TGACAGAAGAAAACCTGAAGAAGAGCACCGAAATCGAATCATTAAAACAG
AGAATAGAGGAATTGGAAAAAGAAAGAGCAGAGCACATGGAAAATGAACA
ACAAAGggaacgcgaggaaacggaacgactgaaagctttgaaattggaaa
gggaaaaagaagaaaaagaaaaagcgcAGAGAAATATTACAGGTTtgtga
tttgattgattgattgattgattgattggattTAATCCtcacaaaaattc
caaaaattatttttttccaaaaacaatttggaaaataaaagaaatcctGC
CAGAGGTAttttaaattctcaatttttgggaaattcaTGCGAAAGTCAGT
TAAACCCCTGAATATTAAATAAGTTGACTCtgtattatgaaattttgaaa
gatacTTTTCTAACATAGGGCAGCGCTAACaatatcaatatttcaaaaat
tattttatattgATAAACTAAAAAGTACATCACTCAGAGTTCCGTGCTTA
CGCACTAATCATATGTACAGTAATGATTGAAATTCAACGTAAAGAGTaaa
aaaaCTGGATAATTTGTGCAATAAAACTAGGTAATAAAAACAATGACGAA
AGcataaaaaagtcttgaaaaagaatttatgaTTTGTCCAGGGGACCAAT
TTAAAGGTTCTTTAGAATAAAATTGTTGTTATGGCGACATTtggaaataa
gtccagatctttTGTTTACGAGATCCAGTTCTGAcgtaattattatttta
aaattttttctgtgAGGCAGAGGTTGCATTTTTTCGAGCCGTTGGACATA
GTGCAGCTAATGCAGATCTGTTTTCTTTCCTTCCAGCATCAAGTCTCGAT
ATATCAGCGACCTTAGCTACTTTACCATCCGatgcaaaattttcaagaac
GAGGCCAAAAAGTTTACTGACTGAAACCAATATCGCTTTATCACTGCCTG
AGGCAGAAAAAATCGACTTATATGAGGTAAGACAGAGTTGCTCTCGTGCA
CCTAATAGGCAGGGAGATTCCAatgagggggagggggtactaacTCTGTA
GGTACCACTAGTACCAGGTACTAACTTTTGTGGAAAAAGGGACCCAACCC
CCTATTCAAAAGCCAGTTACCGAGAAAACCATGGGTACATCACCCTGGAA
AAATGCCTTGTAATACCTAACAGTCAATTTTTCCTCACCAAAAATGTGGG
AGAGCTCGAGGTCTGGAAATATTCCTGCGacaattcgattttcaaaatta
caaaattatcaggaaaacaaaaaatatatttgaaaatgatgagtaagcaa
acgatatcactcttatttaaaaacaaaaactttaaataaGCAGCATAGGA
TCAAGGATATGATGGGTGTATGATTTTTGATCCTATGCTGCTTATTTAAT
TGGTAATTGGTTGTAGTTTGTTTATCTTCTATCTGCTCTTGGACAAGGTT
CCgtctagaaaaacaaaaatttttagagATCACCCGAAGTTTAAGACAtt
ctttttatgagatagaaggAGGCGCgccaaataaacaaaagaatttctgc
ACATTTGTGCTCTCGTAGCGCTGAAGGCAAGAAAAGTTgtcctttctttt
gtttaagagtGCTTTGTAtgcaaatggtaggagatacgtCAATTGGTGTC
CTTTAACCCGGGGGAGGGAATACTTAGGTAAAACCggtgatgggtatgtg
cgagccataagagTACTCTTTTTCGAACCTCAAAAGTCCCTCGAATTCTT
AggtttgtctctcaaagggtcccataTCGctaaaaattttgacaaaaatc
tccTAAAGGGTCTCaaagaagtttttaaaaaaattcctcaaagggtcgat
tttcgatttttagcTCGGACACACCTCGCTGACCTAGTACACCCTCGGAC
CTTTAACTTTACGCATTCCTTCTTCCCTGGACATTATAAGATATCAACAA
GATATTCTATATTGTGCGGAGCCTTTGTttacaaaccaaaacaaaccaat
ttaACAACATCCTCCCTAACGCTTCAGGGTTCTTGGGGCTTTAGAAGGCA
AAAATTTGAGTGCTTTTGCCGGTATACGGACATAAAaaatgcttagaaaa
atccTTGTAGAATATAAGATAAATGATATCACTTAAATTTACTTATTCTT
TCTTCCACAACAGGACATTATAATGGATCAACAAGATATTCTAGATTTCT
ACTCCATACTATGTGGTACGTCTGTttataaaccaaaacaaaccaacaca
ACAGCATCTTCCCCTAACACAACACCGTCAAAGAGTGGACGAcccaagaa
gaagaagaatgatgatgaagaaagtgtgaaaaatgaatttgaatatCATT
GTCGCGTacaacaaataaataaaccgCTAGAAGGTGAGGAATTGAAGCTG
CGTTTTTGAGACTGTATTCTTAGGTTCAAATTAACccaaattaattatta
aaattttgaaaattttccaattttcggtTGACCTCCTTggatattcaaaa
ttaccctcaaacagccagtttaccccccggacactatatcttCCACTCCC
ATGTACGAACGTTTTGAGGAAGAGCCCTTTTTAACAACTACACCGTTTTA
GCAAGCTCAACATTTTCTTAATCATCACGACCTCAATGATTTACCGTCAA
TATGGCGTCAATATGTTGTCTGCTAAATCCACTGTCGAAAAAACTGGACT
CCTTACTCTAAGTTACCGATAGACGGAGGATGCAAAGGAATGGCGTCCTT
TGATTTGACCTTCTTTGAAATTAATTGTCAATGTGAGTAAGAAATCACAG
TTTATCCATGAGTgataatttctaaaattttcatttttcagactATCCTT
TCACATTCAAACTCAATATGCATCTACGAGAAGTCAAATACATACCTTGT
AAAGACGAATCATTATTCAATACTTTCAAAGAACACTTACCGTGTAATTT
AAAGACCAGCTTGACACACGATGCTGAcgaagcatatttatttttgaaag
aacttATAACGAAAGTGGGCGAGTCAGCAACGTAA Coding sequence (CDS) from alignment at sc0000067_pilon:383122..388456+ >XLOC_025833 ID=XLOC_025833|Name=XLOC_025833|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2208bp|location=Sequence derived from alignment at sc0000067_pilon:383122..388456+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCGATGCaagtgattttttgaaaattgaaaatcaaaatgagaaGAC
TTTGATTGAAATGGCACTTGAGGATGGGGATGATGAAAAACAGGAGAAAC
CAACAGACGAAAAGaatagaaataaagaaaataagATGATCGATGCaagt
gattttttgaaaattgaaaatcaaaatgagaaGACTTTGATTGAAATGGC
ACTTGAGGATGGGGATGATGAAAAACAGGAGAAACCAACAGACGAAAAGa
atagaaataaagaaaataagatGCCAGTATCTTCACAAGAGAACATTGAT
TCCTTGATGGAATATAAATATAAAGTTGAACGACTGTGTGGTATACTTGG
TCAATTTCAAGAACAACATCATGAAGTTGTCAATAATTATCAAAAAGTAA
TCAAAGatGCCAGTATCTTCACAAGAGAACATTGATTCCTTGATGGAATA
TAAATATAAAGTTGAACGACTGTGTGGTATACTTGGTCAATTTCAAGAAC
AACATCATGAAGTTGTCAATAATTATCAAAAAGTAATCAAAGAAAACAAA
GAATCAAGGGAGAAATTGAACCTAACACTTTTCGAATTGGAATCCGATAA
ATACCTACTGCAGCAAAATGTTCAAGAACTGACAGAAGAAAACCTGAAGA
AGAGCACCGAAATCGAATCATTAAAACAGAGAATAGAGGAATTGGAAAAA
GAAAGAGCAGAGCACATGGAAAATGAACAACAAAGggaacgcgaggaaac
ggaacgactgaaagctttgaaattggaaagggaaaaagaagaaaaagaaa
aagcgcAGAGAAATATTACAGAAAACAAAGAATCAAGGGAGAAATTGAAC
CTAACACTTTTCGAATTGGAATCCGATAAATACCTACTGCAGCAAAATGT
TCAAGAACTGACAGAAGAAAACCTGAAGAAGAGCACCGAAATCGAATCAT
TAAAACAGAGAATAGAGGAATTGGAAAAAGAAAGAGCAGAGCACATGGAA
AATGAACAACAAAGggaacgcgaggaaacggaacgactgaaagctttgaa
attggaaagggaaaaagaagaaaaagaaaaagcgcAGAGAAATATTACAG
CATCAAGTCTCGATATATCAGCGACCTTAGCTACTTTACCATCCGatgca
aaattttcaagaacGAGGCCAAAAAGTTTACTGACTGAAACCAATATCGC
TTTATCACTGCCTGAGGCAGAAAAAATCGACTTATATGAGCATCAAGTCT
CGATATATCAGCGACCTTAGCTACTTTACCATCCGatgcaaaattttcaa
gaacGAGGCCAAAAAGTTTACTGACTGAAACCAATATCGCTTTATCACTG
CCTGAGGCAGAAAAAATCGACTTATATGAGGACATTATAATGGATCAACA
AGATATTCTAGATTTCTACTCCATACTATGTGGTACGTCTGTttataaac
caaaacaaaccaacacaACAGCATCTTCCCCTAACACAACACCGTCAAAG
AGTGGACGAcccaagaagaagaagaatgatgatgaagaaagtgtgaaaaa
tgaatttgaatatCATTGTCGCGTacaacaaataaataaaccgCTAGAAG
GACATTATAATGGATCAACAAGATATTCTAGATTTCTACTCCATACTATG
TGGTACGTCTGTttataaaccaaaacaaaccaacacaACAGCATCTTCCC
CTAACACAACACCGTCAAAGAGTGGACGAcccaagaagaagaagaatgat
gatgaagaaagtgtgaaaaatgaatttgaatatCATTGTCGCGTacaaca
aataaataaaccgCTAGAAGactATCCTTTCACATTCAAACTCAATATGC
ATCTACGAGAAGTCAAATACATACCTTGTAAAGACGAATCATTATTCAAT
ACTTTCAAAGAACACTTACCGTGTAATTTAAAGACCAGCTTGACACACGA
TGCTGAcgaagcatatttatttttgaaagaacttATAACGAAAGTGGGCG
AGTCAGCAACGTAAactATCCTTTCACATTCAAACTCAATATGCATCTAC
GAGAAGTCAAATACATACCTTGTAAAGACGAATCATTATTCAATACTTTC
AAAGAACACTTACCGTGTAATTTAAAGACCAGCTTGACACACGATGCTGA
cgaagcatatttatttttgaaagaacttATAACGAAAGTGGGCGAGTCAG
CAACGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067_pilon | genome | sc0000067_pilon:383122..388456 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 913-1104:5144 |
| Aaloc | 691-909:4464 |
| Aaloc | 553-690:3139 |
| Aaloc | 274-549:2216 |
| Aaloc | 136-270:546 |
| Aaloc | 1-135:1 |
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