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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000431_pilon:17721..22297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_025289 ID=XLOC_025289|Name=XLOC_025289|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4577bp|location=Sequence derived from alignment at sc0000431_pilon:17721..22297+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAATCATGTCTCGCCAGCAAAGAGAACGTAAACCATCAGCCAAACTGGC
GGACAATTTTGGTAAGTGACATTTGTTTCAATAGAAGGTGTCGAAGATAC
TTGTGAGGTGCAGTGTAATTTCTTCCAGCacatatttttcttataagcaa
ccttaattttttgGTCAGGGCTTACATTCATTctaactttgtgaaaaatt
gggtcgtacttaaaaacatttcaattttcttttaggGGAAGACACTGGAC
CTgtgttaaagattatttttacaGAGGAAGAATCCAACGGAAAACGCCTA
AACTTATCCCTCccattttcaactttaaagCCAACTAACCATACTGGGGA
ACTAGTACCGCTCGAAAACCTTAAGGAGATGGAAAAGTACAATTTCTTCT
ACCCCCATCTTAAGCAATATTATCCAGCACTCCTCATTGAGatcaaagga
agaaaaaaacgaAGACTGAGTAAaggtattttttctttcatacatTATAA
TAACACACTAAGACAATAACGTGCATCTGAGAGTGATCTTGTTAAGAAGT
ATCATCTGGTCGTTAGATATCTGTGAGCTCCCATCCAATTCGagctagaa
aaagaaaatacacgCTTtatagatattcttataaaaaaagcgtgtaccat
CAAATAGAAGCTAAACAATgacaatacactttttttaagaaacaatttTT
ACCAAGCAGTctcaatgtttcttacatgtctATACTTTTtgacatacatg
tttttttataagcataacgcttataagcatatgaagactcagatttgcag
aatacctaagcataacatgagcatatatgtcagcctaaaatatttttcaa
gtggtcattttctgtttatgtttcatttttatctgatttgGCAGAGGTCA
AGTAAATAATAAGACATTCCACAGCTAGCTACCATTCCACTGCTTCTAAA
ATCTGagcaaattttttacaaaatttctgaaatttcattaaaaacttggt
tcggggtgaatcataagcataattcttaagcatgtAATAAGCATAaacct
ggatgctttgagaacttaagcatacacgagcctgaccaaggggcatacac
ttgcttataaaaaaattgagtaatttggctaagaacatttctgtatgctt
attaatagtgatttttatagataaacatgcaatttttttttcaaaaatcg
ggctccttcCCATTCTAaggtccaaaaatcagaaaatttcaaattaatcc
TTACCTCATTCTTTTCATTAGAAGCAGACAAAGAGAACACGGAGGAAAAT
GATGGTGGGGATGCAAACGATTCCAATCAAGGtttgttctaaaaaaataa
ataaaccatGTTAATTCAAAAATGATAGCCTTATTAAGTGTAGAATAAAA
TATCAACATAGTTGTTTATTAAACTGGAGAAAAAGtccttttccttttta
aatCAAACTCGTTGCACCCAATATTACTTATTTAAAAGCCTTTAAAAAGT
AgctatatatatttttcttttaaagacgAAGTGAGAAgaccaaaaacaaa
gaaaaagcgCCAACAAGGTAAATCCTAGTTCAGTATAAGTCTAGACCATG
ATATCTTCCAGGTGTTTAGGTCCCTCCACATAGTTTCTTTACCTACATTC
aggggggtcttgggttttgatgaaccaaaagcaagggggaTGTggggggg
TCATCTTAGATAAGGGGggggggggatcttccttgaattatgcaaaattt
caattttttacttatactgattttctaaggggggatgtgaaattttaaat
gaattctCGAggggggggttagcacttaaggggggtcctcttacctaagg
gggggtcttgaccctTCTAGAAACTATGCTCCATCTGGGGCCGAAAACCC
CCATTTGGTATTCTACCCCCACCTACCCCCATATCAATTTCCTGCAATAA
AGACACTAATGTTGAACATGGACAAATTTCTTCCCCCTCTTCCCATAAGA
TTTCCTGAAATCCCCCATTTACATTAGCCCCCCATCAAGGTGAAAGTATT
CAGTTTCTTTCACTCCCTCCAGGACAATCTTGTTGTAACAAGTAAATTTT
ATCAAAGATAAGTTTGTTAGATACCTTTATCACTCCATTAACCATAGAAC
AAAACGATGACAATCCCGAGTCAAGCAAGACCAATCCAACAGAAATCACT
AAAGGTTTGTCAGAATGATacctaaaacaataaaaaagatatGAAGCTCG
CAAAGGAAAAAAGTCCGAAATCTGCAGAACATTGAGCTAATATTCACTAA
CAGAGCTTTCAACTTTTTCCATTTAAGAAACTccaaaggaaaaaaagaaa
gaggatgaaacaaaaaacaaaaaacaaaaaggttagTTGACCGTGAAAGT
TCATTGTGAAATATTAGCatacatttcaaaatttatttcatcttTGAATG
ATTTTGATGTTATTAGTGACAACTTTTTATTAAGTTTCAATTTTTACCAA
CAGTTTCattactaccttaaaggaagaaattttggcgggaacttaatttg
gcggatttggtttttctgccatctgccaaattaaatgcccgccaaattaa
actttttgaaaatagaatcttttaaggtgtttttacattttttgctgttt
ttacgccatcttaaggatacatttttcagcaaacgccaaaatTCCCgaca
aatttagttttttcggtcaaccgccaaattaacttcccgccaaaatttct
tcctttaaggtagttgaATGACCCTAATTTCTTTAGAGAAAGAAAACCAA
TCAAAGAAGGCCAAGGCAAATACATCAAATTTGCTTGCACAGGAAATCCT
TGCGAAAGGTAAAAGCCATTATAGCAATATTCCAAGACTAAAAAAGGCTG
TGACTTTCTTTATACAATGCAAATGGAAATAAGAACCAAGCTAGAATTTT
TTGACTGATGTTGAATCAATATGGCCAATATGACTAAATATTTgtcatct
ttcttcttttagatGCAGCAATCAATCTTAATATCAACGACAAGTTGTTG
ACTGAATACGTGGACATTGATGATATTCAAGAAAAAGCCCAAAATATGGA
CAGTTCTCTAGGTAATCAATATTTGAGATATGTCACATTGGATAATGTAA
CAAAATGTGTATGTATGGAATATAAAATTAATACTGACACATTGCTTTAA
GTTTCAAGAACTGCAccactttttctattttaatttgTTATTACTTATCT
TCAAAATGGAGAAACTTAAATTCTAGTACCTAGATCGTTATAATAACATT
TTTTGCAGATTTCAACATTCAAAGAACAAACAGAAGTCAGTCAATAGAAA
ACCAAACAATCGACACAATTGACACAGCAACACAAAACCATACAGTGTTG
AAACCTAAATGTCAAGCTGAAGTACCTGAGGAAAATGGTAAATTCTTCTT
TTAGGTCTTTCCTAGATTTgtaactcgcacttttgatttttcaactcgca
attttaatttgcaactcacactattgatttttcaactcgcgattttaatc
tgcaactcgcgattttaatctgCAACTTGTGATTTTGATGTCTTAacgtg
aaattttcaacttgcAACTCACacttttatttggttaaaatagcaactcg
taactcgcaactcgcatatttgatagcaactcgcaactcgtaggaccaac
tcgcaactcgtatgTTAAAAATCCACTTCCTTATATATGACCAAAGTCTT
TTCTCATACAGTTCGTTCttatcgaaaaaaaatatttgtgcaGTATAACT
CGGAAGATATCAAATAAACAATGTCATTACCTTAAGGGATCTGGTTTACT
CCAAAGACGACCAAAAGACTATGTGATCAGCGCACCAACACATTGAAACT
GCCAAGTCcagtattttctgaaaaaggtaatgataaaatggtacaaaatt
gttgaaataaTCCAAATATCAGTTATTGCTAAAGGAAGTTCTATTAGGGA
TCCAAAATATATAATGCTCTGAGGGAGAAGAAGTACATTGCCAATATTAA
GCATAGATAATTGAACAATTTCTAAGATACACTATGAACagtttgaaata
ttattttgatagcAGCTTAACAAAACCAAAACTCTTTCCTGTTCATTAGT
TTCAGATAATGAGAAATCCCCAATCTACCAGCGCCTGGAACCAAAAGGTA
CACAATCTTATTTCATGGCttgtaaaaataataatattacaACTGTCTAA
ATAGGGttgtttttgtttgatatttGGACTTTTCCTGACGACTGACACCA
AATCAAGCTGCATTCCTTTTCAATCTTTAAGCACTTCAAAACCAAACTAA
AACTGATATGTTTGTTGTAACTGTTTTTGTTTGATTCATGTACAATTAGT
TTTGAAACGACTTTTAAAGACCTTTAACTTCTTTAATAAGGTAACAATAA
ATTATCATTAGTAAGGGAATAAGCATATGACaacaaatctttaaatttta
tagCTAAAGTGTCCTGTACCAATTGCAGAACTGTAATGGCTGAATTGGAG
GAGACCAAAagaaaactgaaagaaaaa Coding sequence (CDS) from alignment at sc0000431_pilon:17721..22297+ >XLOC_025289 ID=XLOC_025289|Name=XLOC_025289|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000431_pilon:17721..22297+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAATCATGTCTCGCCAGCAAAGAGAACGTAAACCATCAGCCAAACTGGC
GGACAATTTTGGGAATCATGTCTCGCCAGCAAAGAGAACGTAAACCATCA
GCCAAACTGGCGGACAATTTTGgGGAAGACACTGGACCTgtgttaaagat
tatttttacaGAGGAAGAATCCAACGGAAAACGCCTAAACTTATCCCTCc
cattttcaactttaaagCCAACTAACCATACTGGGGAACTAGTACCGCTC
GAAAACCTTAAGGAGATGGAAAAGTACAATTTCTTCTACCCCCATCTTAA
GCAATATTATCCAGCACTCCTCATTGAGatcaaaggaagaaaaaaacgaA
GACTGAGTAAaggGGAAGACACTGGACCTgtgttaaagattatttttaca
GAGGAAGAATCCAACGGAAAACGCCTAAACTTATCCCTCccattttcaac
tttaaagCCAACTAACCATACTGGGGAACTAGTACCGCTCGAAAACCTTA
AGGAGATGGAAAAGTACAATTTCTTCTACCCCCATCTTAAGCAATATTAT
CCAGCACTCCTCATTGAGatcaaaggaagaaaaaaacgaAGACTGAGTAA
agAAGCAGACAAAGAGAACACGGAGGAAAATGATGGTGGGGATGCAAACG
ATTCCAATCAAGAAGCAGACAAAGAGAACACGGAGGAAAATGATGGTGGG
GATGCAAACGATTCCAATCAAGacgAAGTGAGAAgaccaaaaacaaagaa
aaagcgCCAACAAGacgAAGTGAGAAgaccaaaaacaaagaaaaagcgCC
AACAAGAACAAAACGATGACAATCCCGAGTCAAGCAAGACCAATCCAACA
GAAATCACTAAAGAACAAAACGATGACAATCCCGAGTCAAGCAAGACCAA
TCCAACAGAAATCACTAAAGAAACTccaaaggaaaaaaagaaagaggatg
aaacaaaaaacaaaaaacaaaaagAAACTccaaaggaaaaaaagaaagag
gatgaaacaaaaaacaaaaaacaaaaagAGAAAGAAAACCAATCAAAGAA
GGCCAAGGCAAATACATCAAATTTGCTTGCACAGGAAATCCTTGCGAAAG
AGAAAGAAAACCAATCAAAGAAGGCCAAGGCAAATACATCAAATTTGCTT
GCACAGGAAATCCTTGCGAAAGatGCAGCAATCAATCTTAATATCAACGA
CAAGTTGTTGACTGAATACGTGGACATTGATGATATTCAAGAAAAAGCCC
AAAATATGGACAGTTCTCTAGatGCAGCAATCAATCTTAATATCAACGAC
AAGTTGTTGACTGAATACGTGGACATTGATGATATTCAAGAAAAAGCCCA
AAATATGGACAGTTCTCTAGATTTCAACATTCAAAGAACAAACAGAAGTC
AGTCAATAGAAAACCAAACAATCGACACAATTGACACAGCAACACAAAAC
CATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCTGAGGAAAATGA
TTTCAACATTCAAAGAACAAACAGAAGTCAGTCAATAGAAAACCAAACAA
TCGACACAATTGACACAGCAACACAAAACCATACAGTGTTGAAACCTAAA
TGTCAAGCTGAAGTACCTGAGGAAAATGGGATCTGGTTTACTCCAAAGAC
GACCAAAAGACTATGTGATCAGCGCACCAACACATTGAAACTGCCAAGTC
cagtattttctgaaaaagGGATCTGGTTTACTCCAAAGACGACCAAAAGA
CTATGTGATCAGCGCACCAACACATTGAAACTGCCAAGTCcagtattttc
tgaaaaagTTTCAGATAATGAGAAATCCCCAATCTACCAGCGCCTGGAAC
CAAAAGTTTCAGATAATGAGAAATCCCCAATCTACCAGCGCCTGGAACCA
AAAGCTAAAGTGTCCTGTACCAATTGCAGAACTGTAATGGCTGAATTGGA
GGAGACCAAAagaaaactgaaagaaaaaCTAAAGTGTCCTGTACCAATTG
CAGAACTGTAATGGCTGAATTGGAGGAGACCAAAagaaaactgaaagaaa
aa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000431_pilon | genome | sc0000431_pilon:17721..22297 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 955-1026:4506 |
| Aaloc | 907-951:4152 |
| Aaloc | 817-903:3839 |
| Aaloc | 688-813:3311 |
| Aaloc | 589-684:3015 |
| Aaloc | 517-585:2789 |
| Aaloc | 463-513:2330 |
| Aaloc | 406-459:2150 |
| Aaloc | 364-402:1528 |
| Aaloc | 304-360:1274 |
| Aaloc | 64-300:238 |
| Aaloc | 1-60:1 |
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