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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000238_pilon:286583..291771+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_023849 ID=XLOC_023849|Name=XLOC_023849|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5189bp|location=Sequence derived from alignment at sc0000238_pilon:286583..291771+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAACAACTGCAACATCAAAGGTTTCACAAAGGATTCCGGTTGAGTTGGT
AAGTATCAAGTGTTATTTAGTAGTATGTCTTTGAACAATCCATTTATTAA
atgaggatttaatttggtatAGTTCAGAAAGGATTATGTGTTTCCAAGGA
ATTCTAACTCTGAGAGATAGTTTGAATGAAAACTAATTCACAGGCAAGTT
TTTCTGGTAttatatgaaaaaagaaaatgataatttttatattattttgt
aaGACTTCTTTAATTTAACTTTCTGTATTATTTTCTTAGAATGATGATGT
CAGCTCTGTTGGAGATGCTTACTTGATGAGCTCCAAACAGTCATTGACCT
CTCACGTGAACAACATCATGCATGGTGGATCCACCACGTATTCCATCTCT
GCTGATGAACAGGTAATTTGATGGTTTTCAGATTTGTAGACAGCGTCTTT
ATAACTACAGAGATGTTGACtttttttGGTTCAGTTCTCCACCAAAGCAA
GATAAATGTCAAGCATTTGAAGTATTATATCagtttataaatttattttc
atcattatttctaCAAAGCCATTCTTTTGAGGTAGtactacttacttact
taaaggTTCTTGGGGGAATTGTTATGCTCAAATTCTTACcgatattttta
tcttttttttgatatttcagaCTGCTGCAATGGGTTTCAGTCGTGGTGAT
CAAAGTAAAACAGCTTTTTGGAGTGATATGGTTAGTCAAATACTAGATTT
CTTTGTTCTGTCTCGTTTATTTTGTGTCAAGCTTGATTTGATGCTGAGCC
GCAAAATAAAAGGCTTATGTGACCAACAATAAGAATCGTTTGTAGTGGTT
ctccagggggggggtcaacatccagataccagacccatagccgggtggtg
gtgtctttttttcctttaaaagtctgaaaaggcaagttggtattgatggg
ggcgggtccccctttttttagaaaaaaagagttatcctcagttggtattg
ataccaaaatacccctttttttaaataatatgattcagaaagttggtatc
catatcaaaatgacagcaaaactttcctaatttttgcccttatagctaga
aaataccccgggtacatatcagtctaaacaggtttcaattggatttgttt
tagcttttgagtaataatgactgtaaatgagtaataagtataaatgactt
tgaagtttgtttattttggactttttcaatattttcaagttttattttga
tcaagcctgaagcaaaaacattttttctgtgatagcatttggtaatgagt
gaatctattctgttctaaaattatgtactaataatacatagtttttgcac
atcaattatatccagacggtgtcaatcgaacgaatcgaacgccgaatcaa
tctaacgcaattgaacgcaatcgaataattgcaattcgattgtcgaacgc
aatcgaatcacaatcgaatattacccaggatttgctgttcgattgcttcg
tttacgttcgattgtattcgattacgttcgatttaTTCAATAGACtctct
cgagatgcataaatttattgttgtcctcgttttcaaacagatttcattgc
tatgaaattatacatttaaaccaatttaaattcccaaaaggcaaacatta
actctaatacaaaagtacttgaaattcaaaatgtctcatgaggtgtaaac
aacacaattatcattgtgaatatgtgaTTTTgcagcaatgaaatctgttt
gaaaacgaggacaacaatgaatttatgcatctcgagaagagtgtattgta
ttagattttattcgctttggtacttaagcgctcggccgtccacgctaaaa
agctctagcagagtgatccaatttaatttaatttaattaatcaaactcat
cgaacgtAATCGTAATCGAATGAAATCGAAGATTattccaatgtaattga
caatcaatcgaaccaatcgaacatagtcaactatcaatcaaaccaatcta
accttactcgaatgcaatcgaacacaatcgaatattacccaggaatcggc
cgttcgattgagattcgattacgttcgacaatcgaatcgcaattattcga
tcgcgttcgattacgttcaattggtcgattgcgatttttgttcgaagttg
ttcgattgacaccgtctggttatatttgattttgctagcttcattgggtt
tgtttttattatattgtcagttttcagtcattttctattttagcatatga
cattttttgtgttgtgttgaagaaagagtatttcaaaaatgagttttttt
gaagtttctcttagtaccctgtttgtgtgggagggggtgggttcccttta
aacagctttaaactcaaatttgtaaGATTgatattggtactaaattaggg
ggtgggtcccgtgatattttgtcaaattcaaaaagtcatgtcggtatcga
taccaaattaagggggtgggtcccccttttttctgaaaattatgattttc
aagttagtgtcgataccaattttggggtggtggtgttaacttagctcaaa
aggtcaaaagtcaggtttttgggctatgggttggtattattaatgttgac
ccccccccccctgggttcTCATTACaaagttataaaaaaacacattcATC
TAATTTGATAAGATgtaaatttgttcaaaattatGTTAATGAGAAATGAA
TGagatttgtttcaaatttttagactGACAGCTGGAAAAGTGTTGATGGT
GAAGGGCATACCAAAGAAGGAATGACAAAGCATGCTGTTTACAAGCGTAT
CTCTCAACTACTTCCCAAAggtatatcttttttcaaactcATTCATTGAC
TCCCAAAGAAGTGCTAATAAAGGATTTATGGAAATGCATCGGTTTACTGC
AGTGCAAAGCACTGTCCAATAAAGAGTAAGAAAATAGACCAAGAAATATT
CACTAAGTACATGTTATCAACAAATGCATTCCATATGTTTGCTAATAGAT
GTCACAAAGTTTGAATCTTTAAATTTACAAAGTCAATCTTAACAGATGAA
ATGTATTGTAGGATTCATCCATCAGAACGAAGAAAAGAAAGTGGTTGTCA
ACACAAAAGATTTGCAAGTCACTTTTGATCTGAAGAATCAAGTTGACTTT
AACGTATTTTCTGAACTTGTCTTCATGAAATCTCAATACGAagaggtttg
tttttaattttatttttggcgAGTTAAAGAGATCACTGaattacttttgt
ttttaatgacTATTATCTTGGTTAACCTTTCGAATGTTATCTTGGAAATG
TTAAGTGACAGTGAGCTCcaataaatgtcaaaaaactcCTTGATCTTGAT
CTGAGAAATCAGCGACTTGATGTCCGTGAGCCTAAATAATACAGTCAAGT
AGATAAGTCTTTTGTTTCATTGAAGATGTTAGTGATCAGGTTATAGAGAG
CAGAAAAACTAAAACTGGAgtctcaatcttttttttttagctttcaAACA
AGAAGAACTTGGTTGTTGATGGCGCTCCTGACGTCTTTTTACTATCCATC
TCAGCTTTGAAGGGAATTGAACAAAAGTATGGTGAAAACTCGAAGCAAAT
GAAAGCTGCACTTCTTCTCCTTGATGCTGTCATTCCACAACTAGTTGCTG
ATTACCAATCTCTTTACAAAGGAGACATCTTGATCGTTGGGCTGAATCTT
CATTCTGATGCGAGGTATGATTGCCAACAAGTCACTTTCCTATAAAATAA
CAAGGCTCGATCTCTCTAATAGCGGTCACTGAATTTTGATTCATTGTTGT
AagatacactcttttttataagcatacggggaAATCGGGTCGAGGATTGA
GGATCGAGGTCGAGCATACTGAGTGCTTAGGAAAATCTCATTAtcagcct
taatttatgcttatttatgcTTAGACttcgttttgttgattttctttgtg
ttttttttaattttgaatttttaagtcGAAACTCAATGTCGGCTCGaaaa
ggtcagcgttttagaaaagctgcacaagtttttttgcatttggaggtatg
cttagcataatgcttattttttaccgagtttgagcctaagtatgcttata
aacgttatgcttacaaaaaagtcttCATACACGTAGTGACCTTTCTcgtt
tttcttattattttaatATCTCTAGAACCTGTTCATATCTCTAGAACCTG
TTATCTCTTCTTATAGTACTGTCGAAAAACACCAAGAGGATTTACAACAC
GTTTTGAAAAGCTTGAAAGAACAATTCGGTCAAGAATTTAAACATATCGT
CCCTGAACTCCATTCATCAAAAGTCGTAAGTGTGCTTGATTTAatggttt
atttttttgtaaatatggctGCCCTATGCTGGGAAGGGAATCCTTCAATT
AAAGTGAATCGGCAATGGGTTCTTCCAGAAAACTTTTGTGcatgggggat
ggaggatatattgaattattttgtccggggggtagtgaaaaatctgcaaa
atttgcttAGTTTTGGAagcaaacttgctctgtttaggggtaattttgat
tgtccggGGTGTGAGATCGTGTTCGGGGGTCAAAATTCGCAATGTCcgtg
ggggtaaatttccaaaaatgttatatcctccacccccccccccaaacttT
TCTTGAAGAGCTCAAATGTCTCGATTCCTGCTACTAATATTGTTTCGATT
TAATCATATCTTATCTTTTAGGAAAAATCAGTTCACAAGAACTTGTGCGG
TGCTGTGCAAGGAGCTATTGTCAGATTCGCTCCAGGGTTGAAGGTTAGTT
ACCATTTGGCCTATTTTTTCAAACcaagaaatgaaatttggaTCGTCGTG
TTTGATTGAAAGCTCCAATTTAAGAATCCTGATCAATACAATATCACTCG
ATTTTGTTTAACTGCCTTTTTCAACTTGTGggattgttttttaattttaa
ctaTCAATGTTATCTGAGTCAGCCTTTTATTAGACTAGAGTCAACTTTTT
CTTCCTTAACTTTGCTTCTTAATGATATTTGATGACAGTGAAGTCTAGCG
AAGTAGTATGAATATATTAATGttctttatttattattttttttcttaac
ttttttctttgGTACAGTTCAAATGTAACGATGAAGGAGATGTTGCTCAC
AAGGTGTACAGGCGTTCTCTGATTGCTGCTGGTaaaaaa Coding sequence (CDS) from alignment at sc0000238_pilon:286583..291771+ >XLOC_023849 ID=XLOC_023849|Name=XLOC_023849|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000238_pilon:286583..291771+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAACAACTGCAACATCAAAGGTTTCACAAAGGATTCCGGTTGAGTTGGG
AACAACTGCAACATCAAAGGTTTCACAAAGGATTCCGGTTGAGTTGAATG
ATGATGTCAGCTCTGTTGGAGATGCTTACTTGATGAGCTCCAAACAGTCA
TTGACCTCTCACGTGAACAACATCATGCATGGTGGATCCACCACGTATTC
CATCTCTGCTGATGAACAGAATGATGATGTCAGCTCTGTTGGAGATGCTT
ACTTGATGAGCTCCAAACAGTCATTGACCTCTCACGTGAACAACATCATG
CATGGTGGATCCACCACGTATTCCATCTCTGCTGATGAACAGaCTGCTGC
AATGGGTTTCAGTCGTGGTGATCAAAGTAAAACAGCTTTTTGGAGTGATA
TGaCTGCTGCAATGGGTTTCAGTCGTGGTGATCAAAGTAAAACAGCTTTT
TGGAGTGATATGactGACAGCTGGAAAAGTGTTGATGGTGAAGGGCATAC
CAAAGAAGGAATGACAAAGCATGCTGTTTACAAGCGTATCTCTCAACTAC
TTCCCAAAgactGACAGCTGGAAAAGTGTTGATGGTGAAGGGCATACCAA
AGAAGGAATGACAAAGCATGCTGTTTACAAGCGTATCTCTCAACTACTTC
CCAAAgGATTCATCCATCAGAACGAAGAAAAGAAAGTGGTTGTCAACACA
AAAGATTTGCAAGTCACTTTTGATCTGAAGAATCAAGTTGACTTTAACGT
ATTTTCTGAACTTGTCTTCATGAAATCTCAATACGAagagGATTCATCCA
TCAGAACGAAGAAAAGAAAGTGGTTGTCAACACAAAAGATTTGCAAGTCA
CTTTTGATCTGAAGAATCAAGTTGACTTTAACGTATTTTCTGAACTTGTC
TTCATGAAATCTCAATACGAagagctttcaAACAAGAAGAACTTGGTTGT
TGATGGCGCTCCTGACGTCTTTTTACTATCCATCTCAGCTTTGAAGGGAA
TTGAACAAAAGTATGGTGAAAACTCGAAGCAAATGAAAGCTGCACTTCTT
CTCCTTGATGCTGTCATTCCACAACTAGTTGCTGATTACCAATCTCTTTA
CAAAGGAGACATCTTGATCGTTGGGCTGAATCTTCATTCTGATGCGAGct
ttcaAACAAGAAGAACTTGGTTGTTGATGGCGCTCCTGACGTCTTTTTAC
TATCCATCTCAGCTTTGAAGGGAATTGAACAAAAGTATGGTGAAAACTCG
AAGCAAATGAAAGCTGCACTTCTTCTCCTTGATGCTGTCATTCCACAACT
AGTTGCTGATTACCAATCTCTTTACAAAGGAGACATCTTGATCGTTGGGC
TGAATCTTCATTCTGATGCGAGTACTGTCGAAAAACACCAAGAGGATTTA
CAACACGTTTTGAAAAGCTTGAAAGAACAATTCGGTCAAGAATTTAAACA
TATCGTCCCTGAACTCCATTCATCAAAAGTCTACTGTCGAAAAACACCAA
GAGGATTTACAACACGTTTTGAAAAGCTTGAAAGAACAATTCGGTCAAGA
ATTTAAACATATCGTCCCTGAACTCCATTCATCAAAAGTCGAAAAATCAG
TTCACAAGAACTTGTGCGGTGCTGTGCAAGGAGCTATTGTCAGATTCGCT
CCAGGGTTGAAGGAAAAATCAGTTCACAAGAACTTGTGCGGTGCTGTGCA
AGGAGCTATTGTCAGATTCGCTCCAGGGTTGAAGTTCAAATGTAACGATG
AAGGAGATGTTGCTCACAAGGTGTACAGGCGTTCTCTGATTGCTGCTGGT
aaaaaaTTCAAATGTAACGATGAAGGAGATGTTGCTCACAAGGTGTACAG
GCGTTCTCTGATTGCTGCTGGTaaaaaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000238_pilon | genome | sc0000238_pilon:286583..291771 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1186-1257:5118 |
| Aaloc | 1114-1185:4722 |
| Aaloc | 1006-1113:4218 |
| Aaloc | 781-1002:3491 |
| Aaloc | 649-780:3064 |
| Aaloc | 550-645:2724 |
| Aaloc | 490-549:671 |
| Aaloc | 367-489:290 |
| Aaloc | 319-366:1 |
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