|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000188_pilon:99106..102668- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_023309 ID=XLOC_023309|Name=XLOC_023309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3563bp|location=Sequence derived from alignment at sc0000188_pilon:99106..102668- (Clytia hemisphaerica_ch_hm2_pilon)
TATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTT
TCGAGAAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCGG
ATCTATTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGGT
TTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAAGTAAG
TTAGCTTTATTGAGTAATCACAGATGATATAGATATATAGATATATTAGA
TATATAGATGATATACTGTAGAATCCTTTATATAATGAATATTTTTCAAG
TGCCGGAGTGAGTTTTAGGTTGCCATTAACGCTATTAGCATAGATCAAGT
TGAAAATATAGAAAAGTAGTCTTTGAGCTCTTAATCCTTGGGAACGTTAT
TTAGAGATCTGTGGTGCGAAGGTAAAGCATTCGGCTACTGTGCTCAAAGT
TGTGTGTTCGATCCCTGTTCGGGTCATATCAAAGACTTCGTACTTAGTAA
TTTGATACAAAATACAAAATGATACTTGACACCTCCCTCCTGAAATCTCA
ACGAATAAGAGAAGAATCCAGGGTAAAACATCTACCTTCAGGTTAATGCT
ATTGAAAGGGGAGCCTTTAGAACGCCTCCGACTTCGGTCGCAAGAAGACT
TAGAGATACATCAGGACTGAAATTTTTTACATTTTTATCTTTTAGGTGGC
CATTAAAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAGT
GTGAATGTTTTTCCGCCGTCCAAGGATCAAAACACATTGTACGTATTATT
TGAATCTTTCGATGAACGTTTTCACGCCCGGACTTTCTTTCCCCCGACTG
TGCCAAACCTTTTCCTCTGAAAGGTTGCCTTGAGAGGTAGGGGAAAGCCT
GTTGGAGAAATAAGCCGTCGGGAAACGTCCATTGGAGGATTATTGGTCGA
GAAATATCCGTCGGGGAACTATCCTGCTAGCATCGTAACTTCTTCCCTTT
CTTCATTCTAATTGATGATATTTTCAGTCCTTTGTCTAGATATAAATAGC
CTTTTATTGTACACTACGTTAGGACCTCCGACCCTAGGACCTTGAAAATA
AATTGCCACCAGCCCCAGGCCTGAGTTTGGTATCGGATCCCCCTTGATCG
GCTGTACCATTCTAAATTTTTATTCGGATTTGGGATGAACAATAAATGAG
CTTTTAAGCACAGTGAAATAAAACAAAAATTGCTCTAAAGTCTGCAAGTT
CTGGTGAACTTTGCAGATTTTAGGCTATTATCATCACGCCTGATTAATCC
ATTTTAGAGCAGAGCGGCGTGTCGGGCGCTTAGATGATTTGTTAGTGTAA
GGAAATTACAAAAATCATGCCTTTTACATATTTTGTTTCTTTCCATTATT
TCAGGTAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTATT
TGATCATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCCATTAAATAAC
GGTCGTCTATATAATGAGGATCAAACCAAGATGGCATTACGTGATATTTG
TATCGGGTTACGGTACTGCTTTAAGAAAGGCATAGTTCACCGGTATGCTT
TATTTTTCATATTCTGAAACGTAGATCTATATACTTTCTTTCAGTTAAAA
GATGATCAAACACACTTTACATGTTTTTTATAAGAACATAAGGCTTTGAT
GGCTAAAATATTAAGAACAAGTTAAGAAATTAATATGAAGGTTTCACGGA
CTCTAAAACACTCTCAAAATGAAAAAATTACTATTTTAAAAAACTATTTT
AGGCTTTAAACTTAAAAAGATAAAAATATTATTTTTGATGCACTTATACA
AAAGCTTTTTTTTATAAGAATGTTTTTCTTCCAATTCATCATGAATATTC
TTAACTTTTTGGGAAAAATTATTCTGAATAACTGGCAATTTAATAGCAAA
ATGCTCCAAAAATAATGGCATTTTTAGGTTCATTTGCCAGTATTCTTATT
CTTAATTATTTGGCCAATTTCATCATAAATATTCTTATAAAGTAAAAAAA
ACGCGTAGTCTTTCTATATCAAGCTGACAGACTGGCGAGATGATGATGAT
AATTTCAGATAAGATGGAGTTTTTATAAGATACTATAATAATTGGTCATT
TGATGTAATAAAAATGACGCGGTCTTTAGAAAAAGTAAGAAAATTGTTTT
ATTACTGGTTAACAACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCA
TCTCGTCCCGATAATTTGCCATTTCTCGAAAAACTAATTGTAATTAATAA
ATCTCTATTTTAATTTTAATTTGATTATTCAATGTATTAAATTTTTTTAG
TGACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAATGTCAAGA
TTACAGGTAAACAATTTTTATTAACAACATTATTAGAATACACGGGTTGC
AAAATTATAGCAGTACAGTCAAAACATGTGATTACTTGAAAAAATTTACG
AGTGCTTTTTTCGGGAGTAATTTTTCCTGTGGCACTGAGACATATTCAAT
TTTTCTGTTTCAGATTTTGGGCTAGCATACAAAATAAAACACGGTGAAAT
GATTTCTGACTTCTGGGGAACACCCGTGTATAACGCACCAGAGGTTGAAC
GGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACC
AAAAGCGACACATGGAGTTTGTAAGTTTTTTCTTGAATTTTTTTCTCTTA
AAAATCTCAAATCCTGGTTTATCCACTGACAATAAATTTAGGAATAGTCT
TTATCGGAAAAATATGAACAAAGCCACTTACTGTAGGCAAAAAAAAAAAG
ACTGTTTCAGTAATTCCGCTAACGCGATCATTTTTACTTACAGATTCTCG
CAATAATTCAGCATGGCCACATTTCCAGATTTTCATACTCACTAATAACC
TCTTAGTTTACAAACGTGCGGTGTTCTCGTTTCCACCACTAAATTCCGGG
GTTAGAAAACGCCGATAATTAAAGAATAGTTCAATTCATTACACAATTTT
AGAGCATGTGCGGTGTTTACAGAATGGAGCATCTTTTAAATGAAAGTTTA
AGTAGTCAAATGTAAACATTGTACCTGCCACGTCTTTAACGATACGATTA
CAAACACGTGCCAAAACTAACTTATGAAAAATTGAAATGACATTTTACTA
AAAGGTTTAATGTTCTTTTTAAACCGTATTTTTTATAAGTTTCTCATTTC
CGCACCAAGATTTTTGTCATTTTTCAGGAATTTTTCTCTATTTCTCCCGG
GATAACCAGCATGAGATTGCAAACGGTTTGTTTTTAAAGGTACGGAATAT
ATCGTCTTTGAAGCTCATTTTTCAAATACCCGAAGTCCTGTCTTTTTTTC
CGCTAGAAAAGTTGCAAAGGAATCTTAATGCAGAAATGGGAAACTTATAC
AAAACGACGGAACAAGTCCATTTCACTGTTTTTTTAGGGGTGTAATTATG
TATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAATTGT
AAAGTGTGATCGA Coding sequence (CDS) from alignment at sc0000188_pilon:99106..102668- >XLOC_023309 ID=XLOC_023309|Name=XLOC_023309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000188_pilon:99106..102668- (Clytia hemisphaerica_ch_hm2_pilon)
TATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTT
TCGAGAAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCGG
ATCTATTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGGT
TTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAATATCG
TCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTTTCGAG
AAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCGGATCTA
TTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGGTTTCGG
TAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAAGTGGCCATTA
AAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAGTGTGAA
TGTTTTTCCGCCGTCCAAGGATCAAAACACATTGTGGCCATTAAAGTCAT
TGGCGCAGATCACGTAAACGATGACTTGTGTAATGAGTGTGAATGTTTTT
CCGCCGTCCAAGGATCAAAACACATTGTAAAGTTTATAGATGTGTTTGTT
GGTGCAAGTGGTAGTGCCTATTTGATCATGGAGCTCTGTTCAGCTGGTGA
TCTACGGGCTCCATTAAATAACGGTCGTCTATATAATGAGGATCAAACCA
AGATGGCATTACGTGATATTTGTATCGGGTTACGGTACTGCTTTAAGAAA
GGCATAGTTCACCGGTAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGT
AGTGCCTATTTGATCATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCC
ATTAAATAACGGTCGTCTATATAATGAGGATCAAACCAAGATGGCATTAC
GTGATATTTGTATCGGGTTACGGTACTGCTTTAAGAAAGGCATAGTTCAC
CGTGACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAATGTCAA
GATTACAGTGACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAA
TGTCAAGATTACAGATTTTGGGCTAGCATACAAAATAAAACACGGTGAAA
TGATTTCTGACTTCTGGGGAACACCCGTGTATAACGCACCAGAGGTTGAA
CGGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCTCTACGATCCTAC
CAAAAGCGACACATGGAGTTTATTTTGGGCTAGCATACAAAATAAAACAC
GGTGAAATGATTTCTGACTTCTGGGGAACACCCGTGTATAACGCACCAGA
GGTTGAACGGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCTCTACG
ATCCTACCAAAAGCGACACATGGAGTTTGGGTGTAATTATGTATGAACTC
CTAACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAATTGTAAAGTGTGA
TCGAGGGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAA
AGCTCCAAGGAAATTGTAAAGTGTGATCGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188_pilon | genome | sc0000188_pilon:99106..102668 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 691-765:76 |
| Aaloc | 535-687:999 |
| Aaloc | 478-531:1213 |
| Aaloc | 289-474:2160 |
| Aaloc | 196-288:2869 |
| Aaloc | 1-195:3564 |
|
