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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000398_pilon:18920..21619+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_022905 ID=XLOC_022905|Name=XLOC_022905|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2700bp|location=Sequence derived from alignment at sc0000398_pilon:18920..21619+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAACAGACACTGGTGGGTTGAGGAGAGAGTTCCTTTCAAGTATGTATAT
TTCAAATACGAGTTAGTTTTCTTGTTCTCTAAATCCGCAAGGTAACGAGA
AAAATAATTCAGACAAATAAGGCAAATAATTCTTGTTCTATTTTTAGTGA
TATGTTCTGGCATGTTGATTATTTtacatcaaattattttaattcaAGAA
ACCCCCCATTATTGGTTATTACTCccttatgaaattaaaaatttcaagat
attGAGTTCGGGAAAATCTAATGACTCCCACTTGAGCATAAAATTTATTC
TTCCGTCTTTTTAGCATGCTTGAAGTACATTTATGCAGAACTCATGCCAG
ATGGTATGCCAAAAATGCAAGTATCTCTGGTCTTTgagaaacaatatttg
tatgCTGGTTATGTAATGGGAATTAGTTTTCTACAACTTGGCCCATCTCC
GACTATTATGAACAGAGAATGTTTTAAATGCTTATGTGATGAGCCAATCG
ATCCAACTCATGAGTTTTTGGATTTGCCTTCTGTGAAACCAGtaagtttc
taaaaattgaaaatgaaagtaaccCAATATATCTGATAGGCTGCAATTAC
ATTAAACACTTTAAATGTCGCGTGGTCGTCAATTCCGTGCAACGTATGTA
GACCAATGCAACAGAGTAAATTTTCGTTTATGACCCAGTTTTTTAGTCTC
TTTTTTATCCTGGCACATGCAGGGTAAAAATATGCATtgtggagaaaaaa
atggaaacaGGACCAAAAGCGTTGCTTTCTACTCTAATTTTTATGAATCT
TTTCGGCTCAATAATACTGACTGCAGTCTGCAAATCCTTGGTGTGACGAA
TTAGACAGACTTCAAacttcaaataaattttacttttactttgaTATAAA
TGTTGCTAATTTTCGTTGATCAATTTAAACCagattgattccaacattgg
aATATAATATGGATATCAGTATATCAGAATAATCATTTAGTAACCTATTT
AGATCGCCGATGCTGGGAGTGAAGAAGAGTTGGCACTCGCATTTCAGAAT
GACGCTACATTTGATTTGTTGATAAAAATTGGCCACCAAGGCTTACCATC
CAAGTTGGAGAAGAAAGATGAATTCTTGAGGTAAGTTTAGGGGGTCAAAA
TTGGgctatttcattaaaaaactgtACAGGAGGTGGACGCACCGATTCAG
ggtagaaatattttttgttgaaaatcggccaatacccccttggaaaagtG
AGAAAAATAGAATACCCCTggaaagtttttctcaaatactcttgggtacc
taataaacgtaccccccccctaaaatTCTTATTCCAACGTTCCaacccgc
ttattaatttttgaaaaaatatttttgaaagttccttcttttgtcttaat
tcttCTGGCTAACATCCTCTAATTTTTTCCACCCAAGACATTTTAATTcc
aacaccccccccccgctaattcagaagattttttaccaatgtataggtAG
ACAAAGTCTGATTATCATACCCTTTGGAAATTTActtaaatttttacttg
aaaatcacaaaattttccctTAAAATTTTCCCTTCACCCTCCAGGAATTT
TCCTCCAAATACCCCCAGAAAATCTCGACCACCCCATGTACGGATATGAT
GTATGGTGTATATTAAAGattaatttttcagttagtgGTGTACTGAACGG
GTTGaaaaaaaGTACATTATACTAAAAAGGTGTTGTCCAGAGGGTTTCAA
TAGTTTTTCATCTTGTAGGCACATGAAATCTCACAACCAAGTGAAGAGGT
GGCGCATAAAATAATTACACTCcattatttatttaattttttatcattac
agAATGCTATATTATAAAGAGACATTGGAGCCACGAATTGAAGCAATTCG
TCAACTTCAAGCAGGACTGAACATGCGCGGCTTACTACCcctaataaaaa
aacattcggaGGAATTCTCGAAATTCTTTGTCTTCAACGCAATAGGCATC
GATTACTTCCAGTTTGTGGACGAGTTCAAACCTATATTCCAACCAGAAGG
TTCGAATAAGTTCATACGAGAAGAACCAATCAACAAATACTTTTGCGACT
ATATCGAAAGTTGCAATTCTAGTGGTAAGTTGTCAAGAATTCTGttaaaa
aaaagtattgaatGCCCATTGAATGTCAAATAGGTGAATTGGTAGACTTT
GTAATTTCATGTGTTGTAGACATTTTTCTTCGTATTTACAGTAATAGAAA
CAGCCGTAAAGATATACTGTAGATAAAGTCTACAATGTaacaaaaactaa
aatattaaaaacccACAAAGCTTtagatttcaaagattttaagcAACTTA
AGGCCTGGATTTCGAAAACTCCTTAGCAACTCTaggcctgacccgaaaat
tggagttgcttataaaaaaatgtgtagctcAATAGTCTCttttttttAGA
TAACGCAACACATTCGCTGAGCGATGTCTGCCAGTTTATCACTGGAAGTA
TGAATATTCCACCCATGGGATTTCAACCCTAAATTGTCGTGAAATTTGTA
CACGACTGCGATCACGACTGTCAATGTTATCCAGAGGCAAGCACGTGTGC
TTATGTGATCAAGTTGCCCGTCCACATCAATAGCCTCCAAGAGATGATTA
CAAAAATGGACGAGGCCATTATCAATGCGCCATTCTTTTTCAAGGGATga
Coding sequence (CDS) from alignment at sc0000398_pilon:18920..21619+ >XLOC_022905 ID=XLOC_022905|Name=XLOC_022905|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000398_pilon:18920..21619+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAACAGACACTGGTGGGTTGAGGAGAGAGTTCCTTTCAAGGAACAGACA
CTGGTGGGTTGAGGAGAGAGTTCCTTTCAACATGCTTGAAGTACATTTAT
GCAGAACTCATGCCAGATGGTATGCCAAAAATGCAAGTATCTCTGGTCTT
TgagaaacaatatttgtatgCTGGTTATGTAATGGGAATTAGTTTTCTAC
AACTTGGCCCATCTCCGACTATTATGAACAGAGAATGTTTTAAATGCTTA
TGTGATGAGCCAATCGATCCAACTCATGAGTTTTTGGATTTGCCTTCTGT
GAAACCACATGCTTGAAGTACATTTATGCAGAACTCATGCCAGATGGTAT
GCCAAAAATGCAAGTATCTCTGGTCTTTgagaaacaatatttgtatgCTG
GTTATGTAATGGGAATTAGTTTTCTACAACTTGGCCCATCTCCGACTATT
ATGAACAGAGAATGTTTTAAATGCTTATGTGATGAGCCAATCGATCCAAC
TCATGAGTTTTTGGATTTGCCTTCTGTGAAACCAATCGCCGATGCTGGGA
GTGAAGAAGAGTTGGCACTCGCATTTCAGAATGACGCTACATTTGATTTG
TTGATAAAAATTGGCCACCAAGGCTTACCATCCAAGTTGGAGAAGAAAGA
TGAATTCTTGAGATCGCCGATGCTGGGAGTGAAGAAGAGTTGGCACTCGC
ATTTCAGAATGACGCTACATTTGATTTGTTGATAAAAATTGGCCACCAAG
GCTTACCATCCAAGTTGGAGAAGAAAGATGAATTCTTGAGAATGCTATAT
TATAAAGAGACATTGGAGCCACGAATTGAAGCAATTCGTCAACTTCAAGC
AGGACTGAACATGCGCGGCTTACTACCcctaataaaaaaacattcggaGG
AATTCTCGAAATTCTTTGTCTTCAACGCAATAGGCATCGATTACTTCCAG
TTTGTGGACGAGTTCAAACCTATATTCCAACCAGAAGGTTCGAATAAGTT
CATACGAGAAGAACCAATCAACAAATACTTTTGCGACTATATCGAAAGTT
GCAATTCTAGTGAATGCTATATTATAAAGAGACATTGGAGCCACGAATTG
AAGCAATTCGTCAACTTCAAGCAGGACTGAACATGCGCGGCTTACTACCc
ctaataaaaaaacattcggaGGAATTCTCGAAATTCTTTGTCTTCAACGC
AATAGGCATCGATTACTTCCAGTTTGTGGACGAGTTCAAACCTATATTCC
AACCAGAAGGTTCGAATAAGTTCATACGAGAAGAACCAATCAACAAATAC
TTTTGCGACTATATCGAAAGTTGCAATTCTAGTGATAACGCAACACATTC
GCTGAGCGATGTCTGCCAGTTTATCACTGGAAGTATGAATATTCCACCCA
TGGGATTTCAACCCTAAATTGTCGTGAAATTTGTACACGACTGCGATCAC
GACTGTCAATGTTATCCAGAGGCAAGCACGTGTGCTTATGTGATCAAGTT
GCCCGTCCACATCAATAGCCTCCAAGAGATGATTACAAAAATGGACGAGG
CCATTATCAATGCGCCATTCTTTTTCAAGGGATgaATAACGCAACACATT
CGCTGAGCGATGTCTGCCAGTTTATCACTGGAAGTATGAATATTCCACCC
ATGGGATTTCAACCCTAAATTGTCGTGAAATTTGTACACGACTGCGATCA
CGACTGTCAATGTTATCCAGAGGCAAGCACGTGTGCTTATGTGATCAAGT
TGCCCGTCCACATCAATAGCCTCCAAGAGATGATTACAAAAATGGACGAG
GCCATTATCAATGCGCCATTCTTTTTCAAGGGATga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000398_pilon | genome | sc0000398_pilon:18920..21619 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 670-918:2452 |
| Aaloc | 397-666:1854 |
| Aaloc | 268-393:1003 |
| Aaloc | 43-267:317 |
| Aaloc | 1-39:1 |
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