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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000228_pilon:76159..79491+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_022543 ID=XLOC_022543|Name=XLOC_022543|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3333bp|location=Sequence derived from alignment at sc0000228_pilon:76159..79491+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAGATCTGTCCAATACATCTATCAACAAGACTGTATACTTATCAAAATA
TGGAAAAGATATAGATGGATGTGGAAAAAATGAAAGTCATCCATGTCATA
CACTGGCCTATGTATTCCACCACAGTTACGACAACGATACCAATTTGAGA
GTGTTACTGGTTGGTGGGGAAACAGAACCGTATGATTATTCGGCGCAGAA
CTTCTACATCAAAGATAAAATAACAACTTTATCTTTAGAGCCAACCCCTG
GTTCAAAACGTCGACCCAAGATAATCAACAAGGGCCAAATTACTGAAACT
TTATTTGGATTTCCACATCCACCCTGTTTATACATCGATAACATTGATTT
TGAGTATCTGACAATGGTTAAATGTTCTGGCTCATCCAACAAAACTGGTG
AAATATCAATCAGTAATTCCAAATGGAGTAAAGTTCAAGGAGACCGCAAT
ATGAACAATATCATTTCTGAGTGGAGCGAAAGGTGAAGTGAATTATTCCA
TCAACGTGAAATTAACCGATGTCTTGTTAGACAGTGACGCTATGACGGCT
GTACCGCTAGTTGCTATGGTGACAGATCCTAAGGATGGAGGACATTGGGA
TATTACGGTGTTAAGAACTGAGTTTTCCTGTGTTGGGTTATTTATGAAGC
TCAACAATGGCTCATTTCAACTCATTGACTCTTCAGTAACTGGTACGGTG
ATGAACCAAAACTTTTTTATCCAACTATCAAATTTTGATAGGTTTTATGC
TAAAAATATGACGTGTGGTGATGATGTATGCTCATCTGGAAATTGGGGTT
ACATGAAAATTGACCATATCAGTAAAGTCACAATTGTCAATACCTCTGAG
CcatttatatataatataaactCAAACGTAATTCAAGTGACCAATGTTGA
CTATTTGAATGTCTCTAATAATAATTTCTCAAGATTATATTCCTACTCTG
GAGTCCTTGTATTTTCTGacattcaaaatttgatttttaatcgaAACACT
ATAACATCAATGACGAAGTTTACGTATAATAATGGTGCGTTTTTATGGTT
AAAGAGAATCAACCACACTTTGATGGACTTTACAACTTTCGACAATGTTC
AAGCACCTACTATCAAGTGCACTGATTGCAACGCGTTCAATATGTATAAG
ACAAATTTTACCAGTTCTTACTGTCCTATCAACATTGTTGGCTTTCAAAA
TATTAACGTAGACTCGTGTCATTTTTTCAACAATACTGCAGGTCGTGGTG
CAGGTATGTCTGTAAATGGTGATGGAAAGTTGGTTTTAAAGAATTGTAAT
TTTACCGAGAACAAAGCACTCTTTATGGAAAGTTATTATAACTCTGGTTT
TCAAGCAGGAGCTATTGATAGCGTCGATGCTAATATTGACATCAGTAATT
CTGTTTTCCTATACAATAACGCTGAAACAAGTGGCACTTTTCGTATTACA
GGGGATCACTTTAAAACAGTGCGTTTGTCTAACGTAAATATTACGACGCC
AGATAAAGATATACCCAAATTTGCCACCGCTTTCGAGATAAACGGACCAA
ATCTTATAACAAAAGGTTTAAAGGTGGTGATTCAAGCATCAAAGGGTGAC
ATTGATATTTTCACGACGCATTTCAACAAATCATTATCTGAACTGATGTT
CCAATGCCCTAAGAACGCACAAGTCAACAATGCGGAGGAGAtttttttCA
GTTGTAAACATTGCCAAAAAGACAAATACACAGAACAGGCTGGATCTTTA
CATTATCACATGCATAACAATACCATGCCGTACCGTATTTCAGAGTCATT
CAAATGTCATGCATGTCCTTACGGGGGTCAATGCACAGGAATGGAACAAT
TATCCAGTCGACCGAACTTTTGGGGTTTTGTGCAAAACGAAATCGTCAAA
TTCATTCAGTGTAAGTCAGGTTACTGTTGTGGAGTAGGTGACAAATGTGC
CGGTATCGATAGCTGTGCTAATGGACGAACTGGTCCGATTTGCGGCCAAT
GTCATGAAAACCATTACGTAAACTTCTTTGACAGTAAATGTATACCAAAT
GAAGAATGTActcatcaaattttgacatgggTGATCTTTAGTGTAGCTGC
AGTTTTAGTGTTTCTTGTTGTCGCCTATTTTCAAGACCCATGGAGTTTGT
TCCCTTGCTGCAAACTGTATATTTGTAAgacttgtaaaaatattgactcT
GATACTCATGAAGGAGCAGAAAGAGAATCTTTATTGACCCCTTTACTCGA
TAACGATGATAGCCATCAGATAGCTGACAAAAGTTATGAAGGCACAAGCG
ATGCTAGAAATAACAAAGTCAACAAGAAACATGAACGGGATCATCATAGT
AGCAATAAACCAAAGCAAACAACAGTCATTTTCGGCTTCATCAAAATCCT
ATTCAACTTCTACCAAATCAAACTTCTGATCACCATTGAGAAGCCTTCGA
GACACCTGCATCAGAAGTATGAATGGATTCGACAAATCTTACCGACAGTT
TTCAATCTTCGAGTCACTATCGAGGATTTCTCTACATCGTTCTGTTTTCT
ACTTGGCATGGATGACATTTGGAAACTCTTCATCCGATATGTTCTTCTGT
TCCTTGTTTTGATCGTTCTCGCAGTCCTTGCTATACTTGCTTACCATGga
ttcaactttttgttttatcGTGAAAAGAAAACTAGAACACCAGAAGTCGA
CTTACCCCCGGATGACACTTTCACTTTTGATATTCGCTGCAAAATATTTC
TTGCTCGAATCGTTTTTATCGGGTACACAAATATCGTGACCTTTTTGATG
GCGATGACGTCATGGGCGCATGTAAAAGACGATGAACTGGTCCTTCTCGT
CAAAGGAGACACTGGATATTTCAACGCTTGGACTATAACTTGTATGGTAT
TCTTGGTTTTATGGGCTGCTCCTTTCCCGTTCAACGTTTATTTCACCACA
CGCTGGCTTCAAAACAAAGATATCACAATCAACAAGTTTATAATCTGCTT
CTTGTTTCCACCGTTATCATTGTTGCTATGTAAACAAGCAGACGATGAAA
CACAAATCGATGAGCCAAAAGCTCCTTATTTATTGTCCATGTACGAAGCG
CCGTTTCGAGCAAAAGAGAGTAAAGAGGATAAAAGAATTTTGCTCTGGGA
CGGTGTTATTGCATTTCGCCGCTTCCTAATAGCTGGAGTATGTGTCTGTA
CATGATTATATATTCCGTATGGTTACAGTCTCTCCCATAATGCTCATTCT
TTTGTATCCATATAATTGCTCGAGTCACCTTACAAACAAAATGGAGAACC
ATCTTGTGGACCTGTATCttttttttACTCTCA Coding sequence (CDS) from alignment at sc0000228_pilon:76159..79491+ >XLOC_022543 ID=XLOC_022543|Name=XLOC_022543|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6666bp|location=Sequence derived from alignment at sc0000228_pilon:76159..79491+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAGATCTGTCCAATACATCTATCAACAAGACTGTATACTTATCAAAATA
TGGAAAAGATATAGATGGATGTGGAAAAAATGAAAGTCATCCATGTCATA
CACTGGCCTATGTATTCCACCACAGTTACGACAACGATACCAATTTGAGA
GTGTTACTGGTTGGTGGGGAAACAGAACCGTATGATTATTCGGCGCAGAA
CTTCTACATCAAAGATAAAATAACAACTTTATCTTTAGAGCCAACCCCTG
GTTCAAAACGTCGACCCAAGATAATCAACAAGGGCCAAATTACTGAAACT
TTATTTGGATTTCCACATCCACCCTGTTTATACATCGATAACATTGATTT
TGAGTATCTGACAATGGTTAAATGTTCTGGCTCATCCAACAAAACTGGTG
AAATATCAATCAGTAATTCCAAATGGAGTAAAGTTCAAGGAGACCGCAAT
ATGAACAATATCATTTCTGAGTGGAGCGAAAGGTGAAGTGAATTATTCCA
TCAACGTGAAATTAACCGATGTCTTGTTAGACAGTGACGCTATGACGGCT
GTACCGCTAGTTGCTATGGTGACAGATCCTAAGGATGGAGGACATTGGGA
TATTACGGTGTTAAGAACTGAGTTTTCCTGTGTTGGGTTATTTATGAAGC
TCAACAATGGCTCATTTCAACTCATTGACTCTTCAGTAACTGGTACGGTG
ATGAACCAAAACTTTTTTATCCAACTATCAAATTTTGATAGGTTTTATGC
TAAAAATATGACGTGTGGTGATGATGTATGCTCATCTGGAAATTGGGGTT
ACATGAAAATTGACCATATCAGTAAAGTCACAATTGTCAATACCTCTGAG
CcatttatatataatataaactCAAACGTAATTCAAGTGACCAATGTTGA
CTATTTGAATGTCTCTAATAATAATTTCTCAAGATTATATTCCTACTCTG
GAGTCCTTGTATTTTCTGacattcaaaatttgatttttaatcgaAACACT
ATAACATCAATGACGAAGTTTACGTATAATAATGGTGCGTTTTTATGGTT
AAAGAGAATCAACCACACTTTGATGGACTTTACAACTTTCGACAATGTTC
AAGCACCTACTATCAAGTGCACTGATTGCAACGCGTTCAATATGTATAAG
ACAAATTTTACCAGTTCTTACTGTCCTATCAACATTGTTGGCTTTCAAAA
TATTAACGTAGACTCGTGTCATTTTTTCAACAATACTGCAGGTCGTGGTG
CAGGTATGTCTGTAAATGGTGATGGAAAGTTGGTTTTAAAGAATTGTAAT
TTTACCGAGAACAAAGCACTCTTTATGGAAAGTTATTATAACTCTGGTTT
TCAAGCAGGAGCTATTGATAGCGTCGATGCTAATATTGACATCAGTAATT
CTGTTTTCCTATACAATAACGCTGAAACAAGTGGCACTTTTCGTATTACA
GGGGATCACTTTAAAACAGTGCGTTTGTCTAACGTAAATATTACGACGCC
AGATAAAGATATACCCAAATTTGCCACCGCTTTCGAGATAAACGGACCAA
ATCTTATAACAAAAGGTTTAAAGGTGGTGATTCAAGCATCAAAGGGTGAC
ATTGATATTTTCACGACGCATTTCAACAAATCATTATCTGAACTGATGTT
CCAATGCCCTAAGAACGCACAAGTCAACAATGCGGAGGAGAtttttttCA
GTTGTAAACATTGCCAAAAAGACAAATACACAGAACAGGCTGGATCTTTA
CATTATCACATGCATAACAATACCATGCCGTACCGTATTTCAGAGTCATT
CAAATGTCATGCATGTCCTTACGGGGGTCAATGCACAGGAATGGAACAAT
TATCCAGTCGACCGAACTTTTGGGGTTTTGTGCAAAACGAAATCGTCAAA
TTCATTCAGTGTAAGTCAGGTTACTGTTGTGGAGTAGGTGACAAATGTGC
CGGTATCGATAGCTGTGCTAATGGACGAACTGGTCCGATTTGCGGCCAAT
GTCATGAAAACCATTACGTAAACTTCTTTGACAGTAAATGTATACCAAAT
GAAGAATGTActcatcaaattttgacatgggTGATCTTTAGTGTAGCTGC
AGTTTTAGTGTTTCTTGTTGTCGCCTATTTTCAAGACCCATGGAGTTTGT
TCCCTTGCTGCAAACTGTATATTTGTAAgacttgtaaaaatattgactcT
GATACTCATGAAGGAGCAGAAAGAGAATCTTTATTGACCCCTTTACTCGA
TAACGATGATAGCCATCAGATAGCTGACAAAAGTTATGAAGGCACAAGCG
ATGCTAGAAATAACAAAGTCAACAAGAAACATGAACGGGATCATCATAGT
AGCAATAAACCAAAGCAAACAACAGTCATTTTCGGCTTCATCAAAATCCT
ATTCAACTTCTACCAAATCAAACTTCTGATCACCATTGAGAAGCCTTCGA
GACACCTGCATCAGAAGTATGAATGGATTCGACAAATCTTACCGACAGTT
TTCAATCTTCGAGTCACTATCGAGGATTTCTCTACATCGTTCTGTTTTCT
ACTTGGCATGGATGACATTTGGAAACTCTTCATCCGATATGTTCTTCTGT
TCCTTGTTTTGATCGTTCTCGCAGTCCTTGCTATACTTGCTTACCATGga
ttcaactttttgttttatcGTGAAAAGAAAACTAGAACACCAGAAGTCGA
CTTACCCCCGGATGACACTTTCACTTTTGATATTCGCTGCAAAATATTTC
TTGCTCGAATCGTTTTTATCGGGTACACAAATATCGTGACCTTTTTGATG
GCGATGACGTCATGGGCGCATGTAAAAGACGATGAACTGGTCCTTCTCGT
CAAAGGAGACACTGGATATTTCAACGCTTGGACTATAACTTGTATGGTAT
TCTTGGTTTTATGGGCTGCTCCTTTCCCGTTCAACGTTTATTTCACCACA
CGCTGGCTTCAAAACAAAGATATCACAATCAACAAGTTTATAATCTGCTT
CTTGTTTCCACCGTTATCATTGTTGCTATGTAAACAAGCAGACGATGAAA
CACAAATCGATGAGCCAAAAGCTCCTTATTTATTGTCCATGTACGAAGCG
CCGTTTCGAGCAAAAGAGAGTAAAGAGGATAAAAGAATTTTGCTCTGGGA
CGGTGTTATTGCATTTCGCCGCTTCCTAATAGCTGGAGTATGTGTCTGTA
CATGATTATATATTCCGTATGGTTACAGTCTCTCCCATAATGCTCATTCT
TTTGTATCCATATAATTGCTCGAGTCACCTTACAAACAAAATGGAGAACC
ATCTTGTGGACCTGTATCttttttttACTCTCATCAGATCTGTCCAATAC
ATCTATCAACAAGACTGTATACTTATCAAAATATGGAAAAGATATAGATG
GATGTGGAAAAAATGAAAGTCATCCATGTCATACACTGGCCTATGTATTC
CACCACAGTTACGACAACGATACCAATTTGAGAGTGTTACTGGTTGGTGG
GGAAACAGAACCGTATGATTATTCGGCGCAGAACTTCTACATCAAAGATA
AAATAACAACTTTATCTTTAGAGCCAACCCCTGGTTCAAAACGTCGACCC
AAGATAATCAACAAGGGCCAAATTACTGAAACTTTATTTGGATTTCCACA
TCCACCCTGTTTATACATCGATAACATTGATTTTGAGTATCTGACAATGG
TTAAATGTTCTGGCTCATCCAACAAAACTGGTGAAATATCAATCAGTAAT
TCCAAATGGAGTAAAGTTCAAGGAGACCGCAATATGAACAATATCATTTC
TGAGTGGAGCGAAAGGTGAAGTGAATTATTCCATCAACGTGAAATTAACC
GATGTCTTGTTAGACAGTGACGCTATGACGGCTGTACCGCTAGTTGCTAT
GGTGACAGATCCTAAGGATGGAGGACATTGGGATATTACGGTGTTAAGAA
CTGAGTTTTCCTGTGTTGGGTTATTTATGAAGCTCAACAATGGCTCATTT
CAACTCATTGACTCTTCAGTAACTGGTACGGTGATGAACCAAAACTTTTT
TATCCAACTATCAAATTTTGATAGGTTTTATGCTAAAAATATGACGTGTG
GTGATGATGTATGCTCATCTGGAAATTGGGGTTACATGAAAATTGACCAT
ATCAGTAAAGTCACAATTGTCAATACCTCTGAGCcatttatatataatat
aaactCAAACGTAATTCAAGTGACCAATGTTGACTATTTGAATGTCTCTA
ATAATAATTTCTCAAGATTATATTCCTACTCTGGAGTCCTTGTATTTTCT
GacattcaaaatttgatttttaatcgaAACACTATAACATCAATGACGAA
GTTTACGTATAATAATGGTGCGTTTTTATGGTTAAAGAGAATCAACCACA
CTTTGATGGACTTTACAACTTTCGACAATGTTCAAGCACCTACTATCAAG
TGCACTGATTGCAACGCGTTCAATATGTATAAGACAAATTTTACCAGTTC
TTACTGTCCTATCAACATTGTTGGCTTTCAAAATATTAACGTAGACTCGT
GTCATTTTTTCAACAATACTGCAGGTCGTGGTGCAGGTATGTCTGTAAAT
GGTGATGGAAAGTTGGTTTTAAAGAATTGTAATTTTACCGAGAACAAAGC
ACTCTTTATGGAAAGTTATTATAACTCTGGTTTTCAAGCAGGAGCTATTG
ATAGCGTCGATGCTAATATTGACATCAGTAATTCTGTTTTCCTATACAAT
AACGCTGAAACAAGTGGCACTTTTCGTATTACAGGGGATCACTTTAAAAC
AGTGCGTTTGTCTAACGTAAATATTACGACGCCAGATAAAGATATACCCA
AATTTGCCACCGCTTTCGAGATAAACGGACCAAATCTTATAACAAAAGGT
TTAAAGGTGGTGATTCAAGCATCAAAGGGTGACATTGATATTTTCACGAC
GCATTTCAACAAATCATTATCTGAACTGATGTTCCAATGCCCTAAGAACG
CACAAGTCAACAATGCGGAGGAGAtttttttCAGTTGTAAACATTGCCAA
AAAGACAAATACACAGAACAGGCTGGATCTTTACATTATCACATGCATAA
CAATACCATGCCGTACCGTATTTCAGAGTCATTCAAATGTCATGCATGTC
CTTACGGGGGTCAATGCACAGGAATGGAACAATTATCCAGTCGACCGAAC
TTTTGGGGTTTTGTGCAAAACGAAATCGTCAAATTCATTCAGTGTAAGTC
AGGTTACTGTTGTGGAGTAGGTGACAAATGTGCCGGTATCGATAGCTGTG
CTAATGGACGAACTGGTCCGATTTGCGGCCAATGTCATGAAAACCATTAC
GTAAACTTCTTTGACAGTAAATGTATACCAAATGAAGAATGTActcatca
aattttgacatgggTGATCTTTAGTGTAGCTGCAGTTTTAGTGTTTCTTG
TTGTCGCCTATTTTCAAGACCCATGGAGTTTGTTCCCTTGCTGCAAACTG
TATATTTGTAAgacttgtaaaaatattgactcTGATACTCATGAAGGAGC
AGAAAGAGAATCTTTATTGACCCCTTTACTCGATAACGATGATAGCCATC
AGATAGCTGACAAAAGTTATGAAGGCACAAGCGATGCTAGAAATAACAAA
GTCAACAAGAAACATGAACGGGATCATCATAGTAGCAATAAACCAAAGCA
AACAACAGTCATTTTCGGCTTCATCAAAATCCTATTCAACTTCTACCAAA
TCAAACTTCTGATCACCATTGAGAAGCCTTCGAGACACCTGCATCAGAAG
TATGAATGGATTCGACAAATCTTACCGACAGTTTTCAATCTTCGAGTCAC
TATCGAGGATTTCTCTACATCGTTCTGTTTTCTACTTGGCATGGATGACA
TTTGGAAACTCTTCATCCGATATGTTCTTCTGTTCCTTGTTTTGATCGTT
CTCGCAGTCCTTGCTATACTTGCTTACCATGgattcaactttttgtttta
tcGTGAAAAGAAAACTAGAACACCAGAAGTCGACTTACCCCCGGATGACA
CTTTCACTTTTGATATTCGCTGCAAAATATTTCTTGCTCGAATCGTTTTT
ATCGGGTACACAAATATCGTGACCTTTTTGATGGCGATGACGTCATGGGC
GCATGTAAAAGACGATGAACTGGTCCTTCTCGTCAAAGGAGACACTGGAT
ATTTCAACGCTTGGACTATAACTTGTATGGTATTCTTGGTTTTATGGGCT
GCTCCTTTCCCGTTCAACGTTTATTTCACCACACGCTGGCTTCAAAACAA
AGATATCACAATCAACAAGTTTATAATCTGCTTCTTGTTTCCACCGTTAT
CATTGTTGCTATGTAAACAAGCAGACGATGAAACACAAATCGATGAGCCA
AAAGCTCCTTATTTATTGTCCATGTACGAAGCGCCGTTTCGAGCAAAAGA
GAGTAAAGAGGATAAAAGAATTTTGCTCTGGGACGGTGTTATTGCATTTC
GCCGCTTCCTAATAGCTGGAGTATGTGTCTGTACATGATTATATATTCCG
TATGGTTACAGTCTCTCCCATAATGCTCATTCTTTTGTATCCATATAATT
GCTCGAGTCACCTTACAAACAAAATGGAGAACCATCTTGTGGACCTGTAT
CttttttttACTCTCA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000228_pilon | genome | sc0000228_pilon:76159..79491 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 3250-3333:3250 |
| Aaloc | 3199-3249:3198 |
| Aaloc | 454-3195:455 |
| Aaloc | 1-453:1 |
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