XLOC_021314 (mRNA) -

Overview


Name	XLOC_021314
Unique Name	XLOC_021314
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000234_pilon:465263..470118+
coding sequence from alignment at sc0000234_pilon:465263..470118+

mRNA from alignment at sc0000234_pilon:465263..470118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_021314 ID=XLOC_021314|Name=XLOC_021314|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4856bp|location=Sequence derived from alignment at sc0000234_pilon:465263..470118+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAATGGATATTGATAGAGATGAATTTGATAAGCAtgttgaaaatct
tcaaaaatactgTAGAGTCTGTGGTGAGAGAGTCGCAACAAATATTAAAG
GAGGATATAAGAATGCCAAGCATGTCTTATTTTATAAAGATCAACTCTTG
AAGTATTACGGTACTAACATTGAAAATGATAACATTCGTCAACATCCAAC
AACAGTATGTATGAAATGCAATGCAAAGTTATATAAACTGCTTAAAAGTG
ATGTGAAGGATATAGAAGCAGTGGATAACAATGAACAAACAAGTGGTTCC
AGTTCCAGTTCTGTTCCTGTTCAGTTTTATTTAATTCACCAATTCGATGC
ccatcaaagtttttcaaaatgtgcaaTCTGCCAAACCGCATCCAAGCGTG
GAAGACCAAAATTGCCACATCCACAGCAAGAGTCTACGCCAGAATCTGAA
TTTTTGTACTCACAAGTTGCTGAAGAAATTGGCTTCAAAACTGTGgatga
gaaaaactttttaatcgTTGGAAATAAAGTTATAGAAAAGGAAATAAACA
TATGCAGTGACTTTACAGTTGACGTAAAGATTTATGGAAAACTTATGAAC
AAGGACATTCAGAATCAACTTGGTGTTGCTACGACGATTGATAAAGAGAA
TGCATTGGAGTTGTTCAGTGCGGTTATGGGGTTGAATATTTGTCCTGGTA
ACACTGACTTTGTTGACCTAATCCAACACAAACTGCGATCTTCTGGGATT
CAACAATTCAAAGGAGCAGACAAAGAAGTTATTGCCTTTATGCAGACCGA
ATCAATGCTCACTATTGAAGACATGACCGTGATTCGTCACAAGCAATGTG
AACTAGCATTCAGTGGAAGTGGATCAAGGTGCCAAGTCTGTACCTCATAT
CGCTCAAACTTATTTGCCATGAGAACCCGAATTCAAAGAAGAAGTGCTGA
TAAAAGTCCTCCATCTATTTTCACACCTGACAGGTATATTTGTTATACTG
TATCTAGGTATACTGTAACTTTTTACCACCAAGCAGTAGTAGACCTTCAT
GTTCtgcaattttaagtttttaagctAGAATCTGCTAGAATGTAAACAAA
GTCATGTCATAACTTCGATGGAGGggtgtttattttttaattttaaaaca
cgcACTCTTGAAATTagagaaatgcaatttttactaaaTCTAGAAACTCT
TTACTCGATGaaaaaaaTGGCCAACAAAATCATTTGTGATTTTAAATAAA
CGTGTCATAGCAAGTCAACCAGAAAACTTCATCCCCTTTCGgctgttttt
tttattggaaagtctcaaaatttcttttttgaccaATCATGACAGATAAA
CCAGTGACAGTAAATTTGTGGGGGAAGCtccacaaaaaatgaatttcttg
tCAAAAGATCACTCACAACCTGTGAATTCCAACTTTTTGCTTAGGAGTTT
TGTACTTTCCTATACTTTCAGCAAGCTGAGCCACGAGGACCTTCTGGACA
AACTAAAACGTCTGGAGATTGAAAAGAAGAGTCTAAGTGAAAGATTGAAT
CGGATGACCAAGAAAGTCTCCCAGTTGTTGAAAAGAGATGGTACTGAGCT
CGATGACGAAACTGCTGTAAtcataaatgaaacattggaGAAGAATGATT
CACCATTCGATCCAGACTCTCCTCAACATTTATTGTGGGAGCAGCAAAAA
ACTCAAAGTGCATTGAGGGATGGAAGGGGAATGCGCTGGCACCCACTTAT
AATTCGCTGGTGCCTTAGTATTTATCTAAAATCGCCAGGGACATACAAAA
ACATTCGTGAGTCACCCTTTTTATTCTTACCGTGTAAGAATACTCTCCTC
AAGTATATTAATTTCACTGACCCAGGATGCGGGTTCAACATTGACATTGT
AAAGAAGCTTGTCAACCACGTGAAAGTAGAGACGCTTGATGAATTTCAAA
AGAACGTGGTActtatttttgatgaaatgaaaatcaaaagtgGCTTAGTG
TACTGCAAGACAACAGGCAAATTGGTCGGGTTTACAGAAATGGGAAGAAT
CAATGATGAGATCGAGGAGTTTGGAAGGCTGTGCAACACTGACAAGGACG
ACGCTGATGAGGATCGCCCAATTGCGAAATATGTAATTGTTTTCATGGTG
CGGGGAATCTGTAGTGGCTTAAACTATTCTTTTGGTCACTTCGCCAGTGA
GGGATTTGAAAGTGATCAAATTTTTTACTGCGCCTACGAGGCAACACGCA
TTCTCGAAGGTATTGGTTTGAAAGTTAGAGCCATGACTGCAGATGGTGCA
TCTCCAAACCGCAAGTTTTTTAACTTGCATCGAATGTCAGAAGAAGACAA
CACTATCAATGGATCTGTTTATTGGGCAAAAAACCCTTGGGATTGGGAGA
GAAACATCTATTTTGTGTGTGACCCTCCACATCTCGTAAAGACAACACGG
AACAACCTGGAGAACTCTCATGGTAATCGAAAGACTAGAAACCTATTGGT
AGGAgtatcaaattttcttttttactttttttttgataaataataaattt
tagtgggaattatttttttgtgaatgacaaaaaaagaactattttcactt
actatcaCTAATTTAAATTTCTGCatgtaaaaatgtaaatttttcgGTCA
ATCTTGGGATGAAGGATGTAATTTGGGATTTCCCTTAAATGATATTTATt
gttaagtttcaaatttttcgtaATATTTTAGTCCAAGAGCTTTgtacttt
ttgtaaaaaaatctttcacaTCAAACAATTTGTGCAAGCGGCGATAGGCC
CCGTCAAAGCTGGGTCCTGTCAAAGCTGGGTCCCAGAGGTACCCGCGAAA
GGTTTAAGATACATGTATATAACTTAAAATTGAATAACTTAACTTTTAGT
ATGAAGGACAAGAGATTGGTTGGCATCACATTGTCAATGTTTACAACTGG
GATTTGGGACCAGCAAGACACGTTGTAGGATTACGCATGGGCCACAAGCT
ACGTGAAGAACATGTCAATTTAGATCCACGAAGTAGAATGAGAGTCAATC
TAGCAGCTCAGGTATGTATATTTGGACCTTATACCGGCATCTATTCAGTA
TTATTTGACGACTCGTACTTATAAATACTTATAACTTAAATATTCGTACT
TATTTAAAACATTGTTGTAAGTTCTGGTAATTTCTCAAAAAGTGGAATTT
TGAagagaattttctttttacatgaTACCTttcatacacttttttataaa
aaccagtaaattttggctaaaGCTgggcttttgaatttttcaggctttaa
aatgttcttacaatgttcttaatacgctttGTTTCTTTAGGTAAGAACTT
AAAATGGGTTTTAAACctgttaaaatctgttaaaactTTATTAATAGTTT
CTGAAattgaggctcagattgttcttaatttgttcttaggttttggccaa
ttttcagctaCAAGCAATAATATACTTCTGTTAATGTCtttttttAAGGT
TCTCAGCAAGACAGTTGCTGACATGCTTGCAGAACAAGATCTCGCAGACA
CCAAATCGACAGAAAAGTTCATCAGACTGATTGACAAGTTTTTCGATTGT
CTCAATGTTACTGCAAGAGGAAAAAACCGCAAAGCAGACAGATCTTCCTA
TGAATCTGCTAATGATTCAAGGTTTGAGGTATGTATGCTTTTTAGTTAGG
TTTGGTTGGGTGGTTTTGGGCTATTTAGTATTTAAAACCATACAAGATTT
GCATTGGGGTTTTTCTGGTATTCTGGTATTGTTGCTTTGGTAATTAAATG
AGTCCCATCTTAATTGAAATGCCTACTCTTTGGTGCTAAATTGAAGGAGG
TGAAATTAGCAGGGTTTGTACTCAGGGAAGaatgcaaaaaatcgaaagGG
TGTGGTGGTTTTGGAGTGATTTTCTTGAAATGCctgtaaaatgaattttt
gacaCTTATTTAGGGAAATTTCATGACATGGGGTCTTTTGAATGTTAAAA
AAGGAGTGATCTCTTTCCCTACCATTTTAGGCAGTCTTGTTATagacaaa
taaataaacactactactactactactttagaaaatttttactattttct
tcTTAGTGGCTGGAGAACGATTTTCTCGAATTCCTTGACAAATGGGAAGC
AGAAAGTAAAGACTTGGACCTAACAAAAACTGAGAAGGGTAAACTTTGTT
TGAGTAAGCAGACACTCCAAGGATTGCGCATAACAAGTACGTATTTTTAA
GGATCCTCTTAATACTTTGCCCCCACTGACTTGCATTTAAAACCCTGGAC
AGAGAGCTACATCTACAATTTTTCAATCCAAGATTTGGTTGGCcagaatt
aaaaaaactctGACCTCAACATCAGAACAGGAAGATCCATGATAGGATGG
CACATTGTGttgatttttatcatttattaCAATGAAGATTACATGCTATC
ATTGCTCCCTCGTTGACTCATGGGGCTTATTGTAATGTGAAATTCTAATA
ATGAAATATTTGAGGAAAGCGTTATTAtgatatttaatttttattcctTT
ACTTTAGCGAAATCGTTTATCACTCTGGGAAGATTGCTATTTGCAGAAGG
AGCACAATTTCTTTTGTCAGAGAAATTCTCACAGGATCCCGTCGAGGAGT
ATTTTTCTAAGCAACGTGCGAAACGAGGACCGGATGAAAACCCCGATTTG
GAAGCATTCAATCGGAATGTGTTAGGACTTAATGTGGCAGGAGATGACCT
TGTTAGAGCGGTAAATGGAAATGTACGTAGGAAGAACAAAGAGCGTGCTA
AACTTGATATTCATGACCTGTCGAGGTTACCAACTAAAAAGACTAAACTG
GAGTGA

Coding sequence (CDS) from alignment at sc0000234_pilon:465263..470118+

>XLOC_021314 ID=XLOC_021314|Name=XLOC_021314|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5562bp|location=Sequence derived from alignment at sc0000234_pilon:465263..470118+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAATGGATATTGATAGAGATGAATTTGATAAGCAtgttgaaaatct
tcaaaaatactgTAGAGTCTGTGGTGAGAGAGTCGCAACAAATATTAAAG
GAGGATATAAGAATGCCAAGCATGTCTTATTTTATAAAGATCAACTCTTG
AAGTATTACGGTACTAACATTGAAAATGATAACATTCGTCAACATCCAAC
AACAGTATGTATGAAATGCAATGCAAAGTTATATAAACTGCTTAAAAGTG
ATGTGAAGGATATAGAAGCAGTGGATAACAATGAACAAACAAGTGGTTCC
AGTTCCAGTTCTGTTCCTGTTCAGTTTTATTTAATTCACCAATTCGATGC
ccatcaaagtttttcaaaatgtgcaaTCTGCCAAACCGCATCCAAGCGTG
GAAGACCAAAATTGCCACATCCACAGCAAGAGTCTACGCCAGAATCTGAA
TTTTTGTACTCACAAGTTGCTGAAGAAATTGGCTTCAAAACTGTGgatga
gaaaaactttttaatcgTTGGAAATAAAGTTATAGAAAAGGAAATAAACA
TATGCAGTGACTTTACAGTTGACGTAAAGATTTATGGAAAACTTATGAAC
AAGGACATTCAGAATCAACTTGGTGTTGCTACGACGATTGATAAAGAGAA
TGCATTGGAGTTGTTCAGTGCGGTTATGGGGTTGAATATTTGTCCTGGTA
ACACTGACTTTGTTGACCTAATCCAACACAAACTGCGATCTTCTGGGATT
CAACAATTCAAAGGAGCAGACAAAGAAGTTATTGCCTTTATGCAGACCGA
ATCAATGCTCACTATTGAAGACATGACCGTGATTCGTCACAAGCAATGTG
AACTAGCATTCAGTGGAAGTGGATCAAGGTGCCAAGTCTGTACCTCATAT
CGCTCAAACTTATTTGCCATGAGAACCCGAATTCAAAGAAGAAGTGCTGA
TAAAAGTCCTCCATCTATTTTCACACCTGACAGATGAGAATGGATATTGA
TAGAGATGAATTTGATAAGCAtgttgaaaatcttcaaaaatactgTAGAG
TCTGTGGTGAGAGAGTCGCAACAAATATTAAAGGAGGATATAAGAATGCC
AAGCATGTCTTATTTTATAAAGATCAACTCTTGAAGTATTACGGTACTAA
CATTGAAAATGATAACATTCGTCAACATCCAACAACAGTATGTATGAAAT
GCAATGCAAAGTTATATAAACTGCTTAAAAGTGATGTGAAGGATATAGAA
GCAGTGGATAACAATGAACAAACAAGTGGTTCCAGTTCCAGTTCTGTTCC
TGTTCAGTTTTATTTAATTCACCAATTCGATGCccatcaaagtttttcaa
aatgtgcaaTCTGCCAAACCGCATCCAAGCGTGGAAGACCAAAATTGCCA
CATCCACAGCAAGAGTCTACGCCAGAATCTGAATTTTTGTACTCACAAGT
TGCTGAAGAAATTGGCTTCAAAACTGTGgatgagaaaaactttttaatcg
TTGGAAATAAAGTTATAGAAAAGGAAATAAACATATGCAGTGACTTTACA
GTTGACGTAAAGATTTATGGAAAACTTATGAACAAGGACATTCAGAATCA
ACTTGGTGTTGCTACGACGATTGATAAAGAGAATGCATTGGAGTTGTTCA
GTGCGGTTATGGGGTTGAATATTTGTCCTGGTAACACTGACTTTGTTGAC
CTAATCCAACACAAACTGCGATCTTCTGGGATTCAACAATTCAAAGGAGC
AGACAAAGAAGTTATTGCCTTTATGCAGACCGAATCAATGCTCACTATTG
AAGACATGACCGTGATTCGTCACAAGCAATGTGAACTAGCATTCAGTGGA
AGTGGATCAAGGTGCCAAGTCTGTACCTCATATCGCTCAAACTTATTTGC
CATGAGAACCCGAATTCAAAGAAGAAGTGCTGATAAAAGTCCTCCATCTA
TTTTCACACCTGACAGCAAGCTGAGCCACGAGGACCTTCTGGACAAACTA
AAACGTCTGGAGATTGAAAAGAAGAGTCTAAGTGAAAGATTGAATCGGAT
GACCAAGAAAGTCTCCCAGTTGTTGAAAAGAGATGGTACTGAGCTCGATG
ACGAAACTGCTGTAAtcataaatgaaacattggaGAAGAATGATTCACCA
TTCGATCCAGACTCTCCTCAACATTTATTGTGGGAGCAGCAAAAAACTCA
AAGTGCATTGAGGGATGGAAGGGGAATGCGCTGGCACCCACTTATAATTC
GCTGGTGCCTTAGTATTTATCTAAAATCGCCAGGGACATACAAAAACATT
CGTGAGTCACCCTTTTTATTCTTACCGTGTAAGAATACTCTCCTCAAGTA
TATTAATTTCACTGACCCAGGATGCGGGTTCAACATTGACATTGTAAAGA
AGCTTGTCAACCACGTGAAAGTAGAGACGCTTGATGAATTTCAAAAGAAC
GTGGTActtatttttgatgaaatgaaaatcaaaagtgGCTTAGTGTACTG
CAAGACAACAGGCAAATTGGTCGGGTTTACAGAAATGGGAAGAATCAATG
ATGAGATCGAGGAGTTTGGAAGGCTGTGCAACACTGACAAGGACGACGCT
GATGAGGATCGCCCAATTGCGAAATATGTAATTGTTTTCATGGTGCGGGG
AATCTGTAGTGGCTTAAACTATTCTTTTGGTCACTTCGCCAGTGAGGGAT
TTGAAAGTGATCAAATTTTTTACTGCGCCTACGAGGCAACACGCATTCTC
GAAGGTATTGGTTTGAAAGTTAGAGCCATGACTGCAGATGGTGCATCTCC
AAACCGCAAGTTTTTTAACTTGCATCGAATGTCAGAAGAAGACAACACTA
TCAATGGATCTGTTTATTGGGCAAAAAACCCTTGGGATTGGGAGAGAAAC
ATCTATTTTGTGTGTGACCCTCCACATCTCGTAAAGACAACACGGAACAA
CCTGGAGAACTCTCATGGTAATCGAAAGACTAGAAACCTATTGCAAGCTG
AGCCACGAGGACCTTCTGGACAAACTAAAACGTCTGGAGATTGAAAAGAA
GAGTCTAAGTGAAAGATTGAATCGGATGACCAAGAAAGTCTCCCAGTTGT
TGAAAAGAGATGGTACTGAGCTCGATGACGAAACTGCTGTAAtcataaat
gaaacattggaGAAGAATGATTCACCATTCGATCCAGACTCTCCTCAACA
TTTATTGTGGGAGCAGCAAAAAACTCAAAGTGCATTGAGGGATGGAAGGG
GAATGCGCTGGCACCCACTTATAATTCGCTGGTGCCTTAGTATTTATCTA
AAATCGCCAGGGACATACAAAAACATTCGTGAGTCACCCTTTTTATTCTT
ACCGTGTAAGAATACTCTCCTCAAGTATATTAATTTCACTGACCCAGGAT
GCGGGTTCAACATTGACATTGTAAAGAAGCTTGTCAACCACGTGAAAGTA
GAGACGCTTGATGAATTTCAAAAGAACGTGGTActtatttttgatgaaat
gaaaatcaaaagtgGCTTAGTGTACTGCAAGACAACAGGCAAATTGGTCG
GGTTTACAGAAATGGGAAGAATCAATGATGAGATCGAGGAGTTTGGAAGG
CTGTGCAACACTGACAAGGACGACGCTGATGAGGATCGCCCAATTGCGAA
ATATGTAATTGTTTTCATGGTGCGGGGAATCTGTAGTGGCTTAAACTATT
CTTTTGGTCACTTCGCCAGTGAGGGATTTGAAAGTGATCAAATTTTTTAC
TGCGCCTACGAGGCAACACGCATTCTCGAAGGTATTGGTTTGAAAGTTAG
AGCCATGACTGCAGATGGTGCATCTCCAAACCGCAAGTTTTTTAACTTGC
ATCGAATGTCAGAAGAAGACAACACTATCAATGGATCTGTTTATTGGGCA
AAAAACCCTTGGGATTGGGAGAGAAACATCTATTTTGTGTGTGACCCTCC
ACATCTCGTAAAGACAACACGGAACAACCTGGAGAACTCTCATGGTAATC
GAAAGACTAGAAACCTATTGTATGAAGGACAAGAGATTGGTTGGCATCAC
ATTGTCAATGTTTACAACTGGGATTTGGGACCAGCAAGACACGTTGTAGG
ATTACGCATGGGCCACAAGCTACGTGAAGAACATGTCAATTTAGATCCAC
GAAGTAGAATGAGAGTCAATCTAGCAGCTCAGTATGAAGGACAAGAGATT
GGTTGGCATCACATTGTCAATGTTTACAACTGGGATTTGGGACCAGCAAG
ACACGTTGTAGGATTACGCATGGGCCACAAGCTACGTGAAGAACATGTCA
ATTTAGATCCACGAAGTAGAATGAGAGTCAATCTAGCAGCTCAGGTTCTC
AGCAAGACAGTTGCTGACATGCTTGCAGAACAAGATCTCGCAGACACCAA
ATCGACAGAAAAGTTCATCAGACTGATTGACAAGTTTTTCGATTGTCTCA
ATGTTACTGCAAGAGGAAAAAACCGCAAAGCAGACAGATCTTCCTATGAA
TCTGCTAATGATTCAAGGTTTGAGGTTCTCAGCAAGACAGTTGCTGACAT
GCTTGCAGAACAAGATCTCGCAGACACCAAATCGACAGAAAAGTTCATCA
GACTGATTGACAAGTTTTTCGATTGTCTCAATGTTACTGCAAGAGGAAAA
AACCGCAAAGCAGACAGATCTTCCTATGAATCTGCTAATGATTCAAGGTT
TGAGTGGCTGGAGAACGATTTTCTCGAATTCCTTGACAAATGGGAAGCAG
AAAGTAAAGACTTGGACCTAACAAAAACTGAGAAGGGTAAACTTTGTTTG
AGTAAGCAGACACTCCAAGGATTGCGCATAACAATGGCTGGAGAACGATT
TTCTCGAATTCCTTGACAAATGGGAAGCAGAAAGTAAAGACTTGGACCTA
ACAAAAACTGAGAAGGGTAAACTTTGTTTGAGTAAGCAGACACTCCAAGG
ATTGCGCATAACAACGAAATCGTTTATCACTCTGGGAAGATTGCTATTTG
CAGAAGGAGCACAATTTCTTTTGTCAGAGAAATTCTCACAGGATCCCGTC
GAGGAGTATTTTTCTAAGCAACGTGCGAAACGAGGACCGGATGAAAACCC
CGATTTGGAAGCATTCAATCGGAATGTGTTAGGACTTAATGTGGCAGGAG
ATGACCTTGTTAGAGCGGTAAATGGAAATGTACGTAGGAAGAACAAAGAG
CGTGCTAAACTTGATATTCATGACCTGTCGAGGTTACCAACTAAAAAGAC
TAAACTGGAGTGACGAAATCGTTTATCACTCTGGGAAGATTGCTATTTGC
AGAAGGAGCACAATTTCTTTTGTCAGAGAAATTCTCACAGGATCCCGTCG
AGGAGTATTTTTCTAAGCAACGTGCGAAACGAGGACCGGATGAAAACCCC
GATTTGGAAGCATTCAATCGGAATGTGTTAGGACTTAATGTGGCAGGAGA
TGACCTTGTTAGAGCGGTAAATGGAAATGTACGTAGGAAGAACAAAGAGC
GTGCTAAACTTGATATTCATGACCTGTCGAGGTTACCAACTAAAAAGACT
AAACTGGAGTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_021314	XLOC_021314-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000234_pilon	genome	sc0000234_pilon:465263..470118 +

Properties


Property Name	Value
Aaloc	2485-2781:4560
Aaloc	2353-2481:4107
Aaloc	2173-2352:3499
Aaloc	2011-2172:2900
Aaloc	985-2010:1473
Aaloc	1-981:1

You are here

XLOC_021314 (mRNA) -