XLOC_021149 (mRNA) -

Overview


Name	XLOC_021149
Unique Name	XLOC_021149
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:1368377..1373055-
coding sequence from alignment at sc0000001_pilon:1368377..1373055-

mRNA from alignment at sc0000001_pilon:1368377..1373055-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_021149 ID=XLOC_021149|Name=XLOC_021149|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4679bp|location=Sequence derived from alignment at sc0000001_pilon:1368377..1373055- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCGATTTAGAAGCAAGGATACAAAATCTAAAACCTCTGGCAATAAA
CCCCGATAAATGCACTGTAGATCTGTCACTGTACGAGCAAATCAATCAAA
ATTCAAATGAGTTCCAAGATCGACAGGCAAAACAGTTCAATCTGGGAAAT
GGCTTAAATTTTGGGACCCCTATCAGTGCAGCTGAATACCTACTAAAGCG
CGAATATGGTGAAACATTCCTTTTCGAAGAGGACTCCTCTAAAGCAATAT
TCATACCCCCAGAATTTATATCAAGTCAATACCTCAAAGCTGGTGATTCA
AGTGTAACAGGAATGTTGGATTATAATGTCAAAACAACCCTCACCACAAC
AAAAGAAAACCTCCTGAAGAATTTGCCAGATTTTTGGTTTACAAAGGAGT
TTGATGCTTTCATGAGAAACAATCAACTACAGAATCAACAATCTACCAGC
ACAGGTAATTCCCAGAGTCACAATATTGATCAAACAGCTTTTGACAAGTG
GAGATTCAATGCCAAAATTATGCACCTGGTGATCGAGTTTTCAGGAACAA
GTAATCTGAACCTTCCAGCAACCACCGTTGTAAAGGACTCATTCATCCAA
GGATGTTTATTGGAGCTCAATACATTGCCACCATGTCCAAAAAGACCAAA
CAACATGCAATACTTGGTAAAAATTCTCCAAGGTAAAAATGGGAACACCA
AGAAAAACATTATCAAACTCTACAATGAAAATCCACCAACAAACAAAATG
GCAAAAGCAGTTTTAGAGATAGAGTTATCAGACATCGGTGAACAATCGGA
ACATTCATTATTTGAGCAACTTTCCTCAAAAGCAGCAACAAAGATTCTGG
AAAATGCAGTCGTGTTGAGTTCAGTCAACTTCCTGACAGATTTAAACAAC
AAACGTCACCAAGAATTCGATTCTGTCATCATCTTTTGGCAACGCAAATT
GATCATTGGAGTGGAGATCAAACGCCAGCTGTCAGCAAATACGACGGCGT
TTAAACAGCTTAACAAGTATCACAAGCAATTTGAGGAAAGATTAGGTGAC
CAGTTAGGTGATGGTTGGACTTTCTTCCCGACAATATACGTTCAAAATGA
CAACGGTTTGAGTGAAACTCAACATTTCATTAACACAAATTCTGATATTC
CAACCTGGCTATCAAACATCATAAGCAGATTCCCAATAGCACCATGCCAA
AAACCGTTTATCCATCCCCTAGAACAGCTGAAAAAGGTATTTACGTAATA
TGACTTTGAGCCAAATCAGTACCGCAGAATTGTTAAACTTTCTCATTTTC
GGGGAAACTTTCTTATTGCCACTTCACAACGGAAAAAGTCTCTGGGTAGT
ACAAAAGTAGCTTCAACTTATTAGGTGGTCAGTCTTAGATCCATACGCTC
GCATGTTTACGCAACAAAATTTTTTTGCTGGCAAGCACGTAAAAAACAGC
GGAAGGTTCCCGGGAATGCAACTGTAATGTTTCCCAGGAAATGAGAAAGT
TTAAACTATCTTTGAAAGAAGTAATTAAAACGAGAATCTTTTATATATAA
CAGGAACAGGAGGGCAAACCCTTAGTACCCGTGACATCTTTCATGCGACG
AGACCAAACCTGGTCCATTTCAAAGAATGAAGTTTTCGCGAGGGGGTCTT
TTTGGTAAGGTCTAGGAAAAATTTTAGGACTCAAAAACTGACGTCACAGG
CAAAACCCATTGACCCCTAAAATTTGACAAAATTTAAAAGTCAATAAAAC
CCAAAACCAATTAAACGAAAGCTCGAGAAAATTAACGTCAAAATTGACGT
TTTTAAGTCATTTCCAATCGATTTACTTGAGTTACGTTGGGAAATAAACT
AATTAATAAATAAACTAGTTATTAACGTTTAAATTTCCTCAAATTTCAGG
GGTCAAGGGGTTTTGCCCCTGACGTCAGTTTTTCTAATCAAAAAAATATT
TCCTAGGCCTGAGAACCGAACCCCCCTCGCGAAAATTCTTTTAAATACTT
TATTCTTTGAAATGGAGCAGGTTTGGTAGAGTTGCATAAAAGATGTCACG
GGTTCTAAAGTCTGTCTCAAAAGTAAGTAGACACTTTAATTTTTGAGCAT
TTTCCCAGCATCCATTTATGCTATATTAAAAAGTTATACACCGTTGGAAA
GATATTTCCTAGGAAAATAATCTAAAGGATAAAAGATTTTTGAAAAATAG
AAAAATGAAGAACAGAAATGAAATGAAAAAATAAAGATTTTTCTACTTGT
TCAAAAATCGTGACATCAGGGTATTTAGAGAATTTAAACCTTGCTGATTT
CAAATCTATGTTCAGATTTTTCGTACCTTTTTCTAAATAAAAAGTTACAC
CACTGTGAACTTGGTTGGCGAACTTTTTTTTCCGTTTAAGGACATGTTTT
TTAATTGTTTCGTTTTTGACATTTTCAAAAAAGCTAAATTTTGATTGGGG
TAACTTGGAGGTCCGAAATTTTCACAGGATGTTTGTAGTGATGATAGGAC
CCCAAAAAGTTCTTTTTCCAAAATTCTAGCTGTTGTAGGGGCCATTTAGG
AGCAAGTTTTAGCATTTGTATGTGTTTCGGAAAATGATCTAAATCAGAGC
TAAAAACCCAGGAAGTTGTTTATCTGACCAATGATTCTCATAGAGGGATG
GCAATTAAAGCAGGCTATTGTTAAAAGGCCCACATTTTCCTATTGTGGGG
CCCTTTTTAGAGCACCTTTTTAGCACATATTTCCCCATTGACAATAAGTG
CCAAAACACCAAAGTAAAAGGCTTGATTGGATATAAGACTTCCATAACTT
CTTTTAAAATAGTTGAATAATCAAGTTATTAACACCAATATAAAACTTGA
GCTGTTAATGGGCCCGTTTGGAGCTAAATTTAGCATTTTCCCACTAAAAA
TACTGCAGCAGAATTACTAGTATGTTTCTAAACACCCAATTAAAAGGCTG
GAGTGGGTGTAAAACCTTCATAACTTCCTTTGAAGTAGTTTAATAATCAA
GTTATTATCACCAATAAAACATTTGAGCTGTTAAAGCGCCCGTTTGGAGC
TAAATTTAGCATTTTCCACTGGAAATACTGCAATTTATTCGGCTTCTCTT
ACTAAAATTAACTTTACACCTAGTCTAATTTTTGCTAAATTCAGCTCATT
TTGAGACCTAGGAACATAAAATAACCTCATGAAGTTCTGTTCCATTGTGT
ATCAAACATTAATGATAACTTATTTGATGTTTAAAACCTTTTCAGGGTCC
AGAATCGAGCAAATATTTAACATTTTTCGTTAGATGCTAAAATACTGCTC
ATTTTTGGTCCATTTAACTATGACAAAGATCACAGAAAATACTTTTTAAG
CTTCGTGAGTGATCCAAGCATCAAATAGCACCTAAATGAGCTATGAAATA
ACAATAACCTTTGGGTTATCAAGTTTTAGCATAAAGACATGGCCTTCAAG
AACTCTAAGTCTAGTCAATGCTAAATTTTTGCTCGTAAAAGGACCCTGGA
ATGCTTTATATTGGCCAAATTTGGTTTTTCTATCTTTTTGAATGCCTCAA
GTATGCATAATATCAATATCATAGTTCTTTTGTGTTTATCTTAACTGTGC
TGGTGGATTAAAAAAAACCACACCCAATGCTAAAAACATGCTCATAACTG
GACCATACAACCATTTTTAGTGATTGCTTATGTTGGTATATTGATCTTAT
AAGGTATAAAAAGGCATGCGCAAAGTATTAGAGTCATAGCAGAAATATTG
AGAGAGATACAAGCCTCTAAATCCAAATGCTAAGTATTTGCTCCTACTAA
AATGCTAAGTATTGGCTCATTTTTGGACCGCACTTTGTTGAAGCATAAGT
CATGACAGATTTAAGCTTTAGAAAAAATTCTTTTAAATTTTTAAAGTTCA
TCTTTTCCACGCAACCATCATCAGGGCATAATTTTAGTTCATTCATTATA
TTAGAAATGAAGGATGATTTCCCAAGACCCCTAAAAACGAAACAATTAAA
AAACATGTCCTTAAGGCCTACTTCAAAGGGCTATAACTCTTTATCCAAGA
AAGATACGCAAGTCTTTTCCTATTCCTGAAAAAAAAATTTCACGAGAAGA
TAAATTTTTTTCATTTACGATATCTGTAATTAAGCTCTTCCTCTCATCCC
TAGATAAGTAAATATCTAAAACCTAATGACAAGGCAAATTAAAAGTAGAA
GAATGTGCGTTTTGTGGTATGTATAATACGATTGAAATCAGTTTTTACGT
TCCCTTTTTTGCCAGGTGCTTCAATTTATTGTTTTCACAATTCATGTATC
AAAGAAGAACCTCCCAGCACCGATCATCTCATCCAATTGGGTAGACTACA
TACAGAATGTCATGGACTCCCTATACACAGTGGATAATGTCATCTTTTAC
TCAACGCAACAGTTGCCTATTCTGTCCTCTGAAGATACAAAGTACAAGAA
ACTTTTGATAAAGGGTGGCTGGGGGACAGGTAAATCATTTTTGATGATGG
AGAAAGCAAAGTTGTTGAGCAAAGATGCGACGTACAAAGGGAAAATATTG
TATGTTATATGGCGCCAGATGTCTTTTATAACACTTACAAACTGCAAGCC
GTTACTTTATTATCAGTTGAAATCAGAATTGCCGCCAGATATCCACGTCA
TTGCAGTATGTATATTAACTCTGTTTTAG

Coding sequence (CDS) from alignment at sc0000001_pilon:1368377..1373055-

>XLOC_021149 ID=XLOC_021149|Name=XLOC_021149|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0000001_pilon:1368377..1373055- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCGATTTAGAAGCAAGGATACAAAATCTAAAACCTCTGGCAATAAA
CCCCGATAAATGCACTGTAGATCTGTCACTGTACGAGCAAATCAATCAAA
ATTCAAATGAGTTCCAAGATCGACAGGCAAAACAGTTCAATCTGGGAAAT
GGCTTAAATTTTGGGACCCCTATCAGTGCAGCTGAATACCTACTAAAGCG
CGAATATGGTGAAACATTCCTTTTCGAAGAGGACTCCTCTAAAGCAATAT
TCATACCCCCAGAATTTATATCAAGTCAATACCTCAAAGCTGGTGATTCA
AGTGTAACAGGAATGTTGGATTATAATGTCAAAACAACCCTCACCACAAC
AAAAGAAAACCTCCTGAAGAATTTGCCAGATTTTTGGTTTACAAAGGAGT
TTGATGCTTTCATGAGAAACAATCAACTACAGAATCAACAATCTACCAGC
ACAGGTAATTCCCAGAGTCACAATATTGATCAAACAGCTTTTGACAAGTG
GAGATTCAATGCCAAAATTATGCACCTGGTGATCGAGTTTTCAGGAACAA
GTAATCTGAACCTTCCAGCAACCACCGTTGTAAAGGACTCATTCATCCAA
GGATGTTTATTGGAGCTCAATACATTGCCACCATGTCCAAAAAGACCAAA
CAACATGCAATACTTGGTAAAAATTCTCCAAGGTAAAAATGGGAACACCA
AGAAAAACATTATCAAACTCTACAATGAAAATCCACCAACAAACAAAATG
GCAAAAGCAGTTTTAGAGATAGAGTTATCAGACATCGGTGAACAATCGGA
ACATTCATTATTTGAGCAACTTTCCTCAAAAGCAGCAACAAAGATTCTGG
AAAATGCAGTCGTGTTGAGTTCAGTCAACTTCCTGACAGATTTAAACAAC
AAACGTCACCAAGAATTCGATTCTGTCATCATCTTTTGGCAACGCAAATT
GATCATTGGAGTGGAGATCAAACGCCAGCTGTCAGCAAATACGACGGCGT
TTAAACAGCTTAACAAGTATCACAAGCAATTTGAGGAAAGATTAGGTGAC
CAGTTAGGTGATGGTTGGACTTTCTTCCCGACAATATACGTTCAAAATGA
CAACGGTTTGAGTGAAACTCAACATTTCATTAACACAAATTCTGATATTC
CAACCTGGCTATCAAACATCATAAGCAGATTCCCAATAGCACCATGCCAA
AAACCGTTTATCCATCCCCTAGAACAGCTGAAAAAGATGAGCGATTTAGA
AGCAAGGATACAAAATCTAAAACCTCTGGCAATAAACCCCGATAAATGCA
CTGTAGATCTGTCACTGTACGAGCAAATCAATCAAAATTCAAATGAGTTC
CAAGATCGACAGGCAAAACAGTTCAATCTGGGAAATGGCTTAAATTTTGG
GACCCCTATCAGTGCAGCTGAATACCTACTAAAGCGCGAATATGGTGAAA
CATTCCTTTTCGAAGAGGACTCCTCTAAAGCAATATTCATACCCCCAGAA
TTTATATCAAGTCAATACCTCAAAGCTGGTGATTCAAGTGTAACAGGAAT
GTTGGATTATAATGTCAAAACAACCCTCACCACAACAAAAGAAAACCTCC
TGAAGAATTTGCCAGATTTTTGGTTTACAAAGGAGTTTGATGCTTTCATG
AGAAACAATCAACTACAGAATCAACAATCTACCAGCACAGGTAATTCCCA
GAGTCACAATATTGATCAAACAGCTTTTGACAAGTGGAGATTCAATGCCA
AAATTATGCACCTGGTGATCGAGTTTTCAGGAACAAGTAATCTGAACCTT
CCAGCAACCACCGTTGTAAAGGACTCATTCATCCAAGGATGTTTATTGGA
GCTCAATACATTGCCACCATGTCCAAAAAGACCAAACAACATGCAATACT
TGGTAAAAATTCTCCAAGGTAAAAATGGGAACACCAAGAAAAACATTATC
AAACTCTACAATGAAAATCCACCAACAAACAAAATGGCAAAAGCAGTTTT
AGAGATAGAGTTATCAGACATCGGTGAACAATCGGAACATTCATTATTTG
AGCAACTTTCCTCAAAAGCAGCAACAAAGATTCTGGAAAATGCAGTCGTG
TTGAGTTCAGTCAACTTCCTGACAGATTTAAACAACAAACGTCACCAAGA
ATTCGATTCTGTCATCATCTTTTGGCAACGCAAATTGATCATTGGAGTGG
AGATCAAACGCCAGCTGTCAGCAAATACGACGGCGTTTAAACAGCTTAAC
AAGTATCACAAGCAATTTGAGGAAAGATTAGGTGACCAGTTAGGTGATGG
TTGGACTTTCTTCCCGACAATATACGTTCAAAATGACAACGGTTTGAGTG
AAACTCAACATTTCATTAACACAAATTCTGATATTCCAACCTGGCTATCA
AACATCATAAGCAGATTCCCAATAGCACCATGCCAAAAACCGTTTATCCA
TCCCCTAGAACAGCTGAAAAAGGTGCTTCAATTTATTGTTTTCACAATTC
ATGTATCAAAGAAGAACCTCCCAGCACCGATCATCTCATCCAATTGGGTA
GACTACATACAGAATGTCATGGACTCCCTATACACAGTGGATAATGTCAT
CTTTTACTCAACGCAACAGTTGCCTATTCTGTCCTCTGAAGATACAAAGT
ACAAGAAACTTTTGATAAAGGGTGGCTGGGGGACAGGTAAATCATTTTTG
ATGATGGAGAAAGCAAAGTTGTTGAGCAAAGATGCGACGTACAAAGGGAA
AATATTGTATGTTATATGGCGCCAGATGTCTTTTATAACACTTACAAACT
GCAAGCCGTTACTTTATTATCAGTTGAAATCAGAATTGCCGCCAGATATC
CACGTCATTGCAGTATGTATATTAACTCTGTTTTAGGTGCTTCAATTTAT
TGTTTTCACAATTCATGTATCAAAGAAGAACCTCCCAGCACCGATCATCT
CATCCAATTGGGTAGACTACATACAGAATGTCATGGACTCCCTATACACA
GTGGATAATGTCATCTTTTACTCAACGCAACAGTTGCCTATTCTGTCCTC
TGAAGATACAAAGTACAAGAAACTTTTGATAAAGGGTGGCTGGGGGACAG
GTAAATCATTTTTGATGATGGAGAAAGCAAAGTTGTTGAGCAAAGATGCG
ACGTACAAAGGGAAAATATTGTATGTTATATGGCGCCAGATGTCTTTTAT
AACACTTACAAACTGCAAGCCGTTACTTTATTATCAGTTGAAATCAGAAT
TGCCGCCAGATATCCACGTCATTGCAGTATGTATATTAACTCTGTTTTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_021149	XLOC_021149-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001_pilon	genome	sc0000001_pilon:1368377..1373055 -

Properties


Property Name	Value
Aaloc	1237-1650:415
Aaloc	1-1236:4680

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XLOC_021149 (mRNA) -