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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000238_pilon:331325..335863+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_020866 ID=XLOC_020866|Name=XLOC_020866|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4539bp|location=Sequence derived from alignment at sc0000238_pilon:331325..335863+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTTCTTGTCGATTTTCGTTCTTCTCTTATCACTAATAGGTAAGAA
Atactgtattttttataagttatggcatgtctgaaaaactgaaaagtacc
atatataatttttagatcgcattaggaTTAGctgacagaaaatgaccaaa
caaatgactgaacatgaagggtactgtGATGTAGTTTTTAACCTGAtatg
taacctaattgttttttctccgattttcgcgaaaaaccgcaaaaactgat
tatgacgtcataatcgatgacgtcataaaaactgaaaattgaatttctca
agaatggtttatccaattgtcttcaaactttcaccaaagatgtatctcac
taaagtcaatcatttgaaaaaataaatttttcaaaattttcatgacgtca
gcagaatTATCAGGCGGTTTTTCGTGAAAATaggcgaaaaaacaattagg
ttgtACAcaatcaggttagaaactacatcatagtacccttcatgttcagt
catttgtttggtcgttttctgtcggctaatgcgatctaaaaattatgttG
ATTTTAAGACATACCATAACTTACCCAAGTGCAGAGAATGGTAAAAATGG
GTACAAATTGACCCAGCAAGTCAAGTCAATATCTACTATAAATATAGTTT
GTATAGTGTTAAGATAAGAGCCGCAGCGTATCGGAGGGTCTTCATTGACT
CAAACACAAATTATCAGGCTATTTGACATTCGTAGTCAGACTTTTGTAAC
CCAATGAGTACATGTGCTTAGTAGGCACTCTAATCTGTACGTAGACACTC
TTTTTAGGAAAAATACAAGTTAGATAAAATTGAACAGTGGAATTTGAtct
actttttttataaacagaGTGCCCATacacactttttataagcattacaC
CTATAAGCAACTAGAAAAGGCTCagatttggcaaaatttgagccTAAGAC
ATAGTTCGCACCCCaaagggggggggtagcgatgttcagaaaatctcaga
aaggggggggtaagagaattttttctagaaagggggaagtttttagaaag
ggggggggttcatctagaaagggggggggtaagatgtcagtggtatgttt
ttttttgtgttttcccaaatgagaagttttatttttaatttacaatgcaa
cgtcttctttattaattgtttagtatgtttgaaacattcgattcaaaatg
attctatttttttcgcaatgcagtgtgttctattttcttttgtaggattt
taaaattttgaggggggtagcatcaaattttaaaagggggaagaacctag
ggtagggggggtagctctagggtagggggggtagtgacccccttccgaac
tatgtaagaaaaatgtattttcctgattttgccagtatggattccacgaa
atctcgcgccgaagatatttttccgtgcagcaagcctcacgccaagcaaa
atttcttttgtaccaacattcaatttttcaataagggtgcaagatgggaa
aagaggcgcatgcgccaacataattaataaattgacgcgaGCGCAAGCGA
GCAAAAGCAAATTTTGCCAAACGGAAGCTAAAAATTGATGGATTATGcta
tggagtcattcacgccgagctggaattattactttacgccaactgaaaat
caaacaatctttgtaagtacccttacgccaatgcgccaaaaacgtttcag
ttgtacgccgaagaacttcggcgttagttacacgaaatccatactggtga
ttttggctgtttttggtTTGGATTTTACTAGATTTTCAGAATTTCCCTAA
AGTATTCTTCGGATATAAGCATCCTTATAAGTATTGTTCTGCCTTGTCAA
GTCCTCGACCTAATCATATATCAGcctgtttttgaatttttgtatgctta
taaaaaacatgtatcacgTATGCAGCTAATCTTTTGGAGTCAAAATGGTA
TCCTGATTAGGAAAAGCTCTATCAAGGCAAGTAATAAGGGATTGTACGTg
gaaaattcttcaaaggctaatagaaaggaaaggaaaaggaattaaggaaa
ggaaaactaaaaaaaaaacacaatttcacACACTGAGAAAAGCTTTACTA
AACTTTTGGCTAATTGTAAGATTATTcctatttttttgcatttcccAAAG
GTCATACAGTTAGAAATCAAATATAGAAAAATTCTTAACCTTTAGGGTTG
CTCTGGGTTCTAAGTCTCAGAATAATTCGTTTTTATATTAAGTATCGAAA
TTTGTAAACTTATTGAAAGTTTCATTTGTTCCTCATATCATATTTATATT
TAAATTTTGTAGTTGAAAAGGTTGTtctgtttacttttttgatttatttt
tttttggcttaCAGTACCTTGAAAAAGTGGTTTTGCCAAGCTGTGTAAGC
TTAGATTGAAacattcttctttattttcaggaaatatattttcaaaggtG
TTGAAAGTAAAACgactttccaatgaaataacaTATTCACGAATTGCGGC
TAATGTGGAACTTAAATTTCAAGTACAGACTGACGATGATGCTTACCTTG
GTGTAGAAATAAGTTTCAAAGCTTCAAAAGTAAATGAAGTTTCATCTTCA
ACCttattcaaaatcaatttcgatGACCAAGGAAAACCTTCACTTCCCCC
AAAATATCTAGATGATAATTATAAAGATCGTGTTACCTCAGTATTTCAAG
ACACAAGGTTGACTGTaacaatagaaaatttgaaatcaacagACTTTGAT
ACAGAATATATATGTATTGTGGAGAATGAATTTGATAGATGGGTCAAACC
ATCAAATCAAACTATATTAAAAGCTGCAGGTAAGAAGATATTTGTTACAT
TTCAGGGCAAAGTTTCAGTTAgattttttaagccaaaactCATAGaaatt
tctcaacttcagttgagctagaatctgagaatgtctgtcagTGTCTGCCA
AAAACTTTGGGatagcctggagacttcaaaaatggtggatttggatgaaa
tttggcacacttgttccttaaggaaatatttgggggtatttttttttatt
attgttcaaaaaatttagatttttggggccttggCACTAatcttttggtt
tgttttgctaCAATTGGGCCTTTGAATAATTCTAAGCTACTGAAGTCGAG
CCCAGTGCATTGTGCACTAGCTACAGAGCCCAGTGCATTGCACACTGGCA
ACAATATTGTACATGATGTAGAATATCAGAAActgttttgtttacaattt
tagtACCTCCCAAGATCAATGTGAATTTCTTCTTCCAAGAGAATAGTAAG
ACTCAAACAAGACCAATAAACGAGCCAACAGAATTTGGATGTAAAGTTGA
AGGAAACACTGTACCAACTCCTAATATGAAATGGATAAAGATCGATGATG
CTGGTAAAGAAGTTGTACCTTCAAAGATTACTGCACTATCTAAAGAAGTG
TATTTGAGTTTCAAACCATTGAAATTGGAAGATAGAGCAGCGTACAGATG
TATTGCAGAGAATGTGGGAGGTTCTGATCAACAAGAATTCAATCTTGAAG
TTGGATGTAAGATTTTTAATCAACATGTATTTTCCTGACGTTCCCTAGCT
TAGCTCATTGTAAGTTGTGTAAAGTTTTTACTCCTTAAATTTCATCTGAT
GAGCTAGTCAATTATGTTCATGCTCCTGATTTTTCTTATGAGTGATGATT
CTATTGGAGATTCGACGAAGAGGCAAAGCCTCCTCAGATATTCGATTCCA
AACACTTTTTTAAGAATCTCATTTCTATTTTAATCCCTTTTACTATTTTA
GACATTAATTTGAAGGCACCCAGCCCTGACAGTGAAACCATAGAACTAAA
CATCGGTGATAGCATCCGAAAAATTTGCCCAATAATCGGGGTCCCCATCA
TCAAAAACATTGAATGGCTTATATTCAATCAGACCACGCGTAACTACACC
ATCAAAAACAGTAACCAGATGTTTTTATACAAGATTAAAGATGAAAGTGA
TTTTCGCACATATACTTGTTCAGGCAGCAACGATTATGGTGCAAGGACGT
ACAATTTGACTGTTAAAAATGCAGGAggtaattatcattttgatctTATT
TGTCACACTTGATAATTATGGGTTATTATTGTGAATGTACAAATAGTGGA
GCTCCATCTCTGGAAACGTAGCTAAGCGTAGTATTCTTGTGATCTAAGCC
TCGTAACTTCCTATTTCACTTCTAAAACCCTTTAAAAGTGCGAAGAGACT
TGTTTACCAGGTAGCGTAACATTGATTTTCTCAAAGACAGAATATAAGAT
CATTTCTGAATAATTATTAGTAGTAGCTCCTAATATTTTGACTACTTTAG
ATGGCCTCTTTCACAACATGGAGTATCTTGTACAATACCATAACTATATG
TTGCTATATTCCTTGTTTAGCGTCCACGAGTAAGCCGGTGGTCACACAAA
AACAAGTCAACGGTAGCGGAACCATCAATTATGGCGCTTCAGtttttttG
GTATCTTTACTGCATTTCTTGCTTGTATTACTGCTATAA Coding sequence (CDS) from alignment at sc0000238_pilon:331325..335863+ >XLOC_020866 ID=XLOC_020866|Name=XLOC_020866|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000238_pilon:331325..335863+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTTCTTGTCGATTTTCGTTCTTCTCTTATCACTAATAGATGGATT
TCTTGTCGATTTTCGTTCTTCTCTTATCACTAATAGgaaatatattttca
aaggtGTTGAAAGTAAAACgactttccaatgaaataacaTATTCACGAAT
TGCGGCTAATGTGGAACTTAAATTTCAAGTACAGACTGACGATGATGCTT
ACCTTGGTGTAGAAATAAGTTTCAAAGCTTCAAAAGTAAATGAAGTTTCA
TCTTCAACCttattcaaaatcaatttcgatGACCAAGGAAAACCTTCACT
TCCCCCAAAATATCTAGATGATAATTATAAAGATCGTGTTACCTCAGTAT
TTCAAGACACAAGGTTGACTGTaacaatagaaaatttgaaatcaacagAC
TTTGATACAGAATATATATGTATTGTGGAGAATGAATTTGATAGATGGGT
CAAACCATCAAATCAAACTATATTAAAAGCTGCAGgaaatatattttcaa
aggtGTTGAAAGTAAAACgactttccaatgaaataacaTATTCACGAATT
GCGGCTAATGTGGAACTTAAATTTCAAGTACAGACTGACGATGATGCTTA
CCTTGGTGTAGAAATAAGTTTCAAAGCTTCAAAAGTAAATGAAGTTTCAT
CTTCAACCttattcaaaatcaatttcgatGACCAAGGAAAACCTTCACTT
CCCCCAAAATATCTAGATGATAATTATAAAGATCGTGTTACCTCAGTATT
TCAAGACACAAGGTTGACTGTaacaatagaaaatttgaaatcaacagACT
TTGATACAGAATATATATGTATTGTGGAGAATGAATTTGATAGATGGGTC
AAACCATCAAATCAAACTATATTAAAAGCTGCAGtACCTCCCAAGATCAA
TGTGAATTTCTTCTTCCAAGAGAATAGTAAGACTCAAACAAGACCAATAA
ACGAGCCAACAGAATTTGGATGTAAAGTTGAAGGAAACACTGTACCAACT
CCTAATATGAAATGGATAAAGATCGATGATGCTGGTAAAGAAGTTGTACC
TTCAAAGATTACTGCACTATCTAAAGAAGTGTATTTGAGTTTCAAACCAT
TGAAATTGGAAGATAGAGCAGCGTACAGATGTATTGCAGAGAATGTGGGA
GGTTCTGATCAACAAGAATTCAATCTTGAAGTTGGATtACCTCCCAAGAT
CAATGTGAATTTCTTCTTCCAAGAGAATAGTAAGACTCAAACAAGACCAA
TAAACGAGCCAACAGAATTTGGATGTAAAGTTGAAGGAAACACTGTACCA
ACTCCTAATATGAAATGGATAAAGATCGATGATGCTGGTAAAGAAGTTGT
ACCTTCAAAGATTACTGCACTATCTAAAGAAGTGTATTTGAGTTTCAAAC
CATTGAAATTGGAAGATAGAGCAGCGTACAGATGTATTGCAGAGAATGTG
GGAGGTTCTGATCAACAAGAATTCAATCTTGAAGTTGGATACATTAATTT
GAAGGCACCCAGCCCTGACAGTGAAACCATAGAACTAAACATCGGTGATA
GCATCCGAAAAATTTGCCCAATAATCGGGGTCCCCATCATCAAAAACATT
GAATGGCTTATATTCAATCAGACCACGCGTAACTACACCATCAAAAACAG
TAACCAGATGTTTTTATACAAGATTAAAGATGAAAGTGATTTTCGCACAT
ATACTTGTTCAGGCAGCAACGATTATGGTGCAAGGACGTACAATTTGACT
GTTAAAAATGCAGGAgACATTAATTTGAAGGCACCCAGCCCTGACAGTGA
AACCATAGAACTAAACATCGGTGATAGCATCCGAAAAATTTGCCCAATAA
TCGGGGTCCCCATCATCAAAAACATTGAATGGCTTATATTCAATCAGACC
ACGCGTAACTACACCATCAAAAACAGTAACCAGATGTTTTTATACAAGAT
TAAAGATGAAAGTGATTTTCGCACATATACTTGTTCAGGCAGCAACGATT
ATGGTGCAAGGACGTACAATTTGACTGTTAAAAATGCAGGAgCGTCCACG
AGTAAGCCGGTGGTCACACAAAAACAAGTCAACGGTAGCGGAACCATCAA
TTATGGCGCTTCAGtttttttGGTATCTTTACTGCATTTCTTGCTTGTAT
TACTGCTATAACGTCCACGAGTAAGCCGGTGGTCACACAAAAACAAGTCA
ACGGTAGCGGAACCATCAATTATGGCGCTTCAGtttttttGGTATCTTTA
CTGCATTTCTTGCTTGTATTACTGCTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000238_pilon | genome | sc0000238_pilon:331325..335863 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1024-1140:4423 |
| Aaloc | 748-1020:3804 |
| Aaloc | 445-744:3256 |
| Aaloc | 46-441:2433 |
| Aaloc | 1-42:1 |
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