|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000233_pilon:556711..558678- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_020450 ID=XLOC_020450|Name=XLOC_020450|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1968bp|location=Sequence derived from alignment at sc0000233_pilon:556711..558678- (Clytia hemisphaerica_ch_hm2_pilon)
AGCATGTCAAATGGTAATGCCAATAGGAATGCTTATCAAAGAGAGTACAG
AAGGCGAAATAAACTTTTAGAAGAACATTTTCAAAATGTAAGCTCTGAAA
GTTCCTCAAGCACAGCAGCAATAAGTCCAGCTCAGGTTTATGATTCGCTT
TTTGAAAATGTTCAAGTGGATAGCAATCCCAACCAAAACATTTTTAGTGA
CAATCACTACAGTGATTGCAGCAGTGAGGAGAGTGCTGGTAGCGATTGCG
AAGGTGTGCTAAATTTGTTGAGAGAAGACATTGGCCTTGATGATGATGTT
AATCCACAACAGGATGCTCCTAATAATGATGATGTTGGACCTAACTTTTC
AACACAAATGTCTGAATGGATTCTTCGAAATAAAATAAACCGAACCGCTA
GTAATGAGCTTCTTGCTATTCTAAGACAAAATGGTCATGAAGAGCTACCT
TTATGCACGCGCACGCTTTTAAAAACACCGCGGAACTATGCAATAATAGA
AAAATGTGGCGGTAGCTACATTTATCTTGGCTTGGGTAGGGGTATCTCAA
GAGTGTTGGTGAAAGGTATTCAACTAGATCTTTGTGAAATCGACCTTATT
ATTAATGTCGATGGATTACCAATTTTCAAGTCAACAGGCTCCCAGCTGTG
GCCAATCCTTGGTCACTTTTCCGACAGTCAACCATTTACAATTGCCTTAT
TTTTTGGAACATCCAAGCCATCAAACCCACAGGAATTTATGCAGGATTTT
TTAATGGAATACACCTTTTTGAACACAGAGGGACTTGTTTTCAACAATGT
CAACTACACAGTAAAGATTAAAGCTTTTGTCTGTGATGCACCAGCACGTC
AATTCTTGAAATGCATAAAACCTCACAACGCATACCACGGTTGCGAGAGA
TGTGACATAGAAGGGAATTATGTTTCAAATAGAATGACTTTTAATGATAA
AGGTACTCTTAGAACAAGTGAAGCTTTTAAAAATTATGATTATGCTGGCA
AACATCAAATTACACTCACATGTCTTGCGGATTATGGTATTGATTGCATT
AGTCAATTTGCGCTAGATTATATGTATTTAATTTGTCTCGGAGTTGTTAA
GAGGTTAATGTCTTGTTGGAAAGAAGGATCTAGACCTTATAAATTGTCAG
CTGGCCAACTCACATTGATATCAAACTCTTTAAACCAAATGAAAGGGCTT
CTTCCTTCTGAGTTTGCAAGGCAACCACGTGATCTTAAGGAACTGAAACG
GTGGAAGGCAACAGAGTTTCGTGAATTTTTACTATACACCGGACCTGTTG
TCTTAAAGAATATTTTATCAGAGGAGCAGTATGAACACTTTCTTGCACTT
TCAATTGCTATGAGAATTGTACTTGAAGAAGATTGTGCATTTAGATCAAA
GTACAGTGATTATGCAAAAGAGTTGTTAAATTATTTTGTTCCAATGTGTA
AAGAACTTTATGGTGAAACTTTTGCTGTATACAACGTACATTCGTTATAT
CATATTGTAGATGATTCAACATTCTTTAACTGTTCCCTTGACAAAGTATC
ATCCTTTCCATTTGAAAACCATCTGCAAGTCTTCAAGAAATTTATTCGTA
AGGCTCAGAATCCACTTAGTCAAATGGTGAGGCGAATAGAAGAATTTGAC
AACTTTTCTGTTGATATGTGTTCAAAGAAAACGATTCAATGTAAAATTTC
TACAAATGGTAAAGATTCATGGTTTATGCTTGATGATGGAATTTTTGTTC
AGCTACAAGGCAATGTAACATCAGCAACACCAGATTTCAAGGTTTTCAAA
AAGAGGATGTATCGTCATCTATACAAGGTACCATGTAATTCCAAATCACT
TGGAATTGTTTTCATCAATGGAAGATGTAACTACAAAGTGAAGAAACTTC
CAAAGTATCGTCTTCATCGTAAAGCTGTTTGTCTTCCATACAAAGATGGG
AAAGTTCTGACCCCACTG Coding sequence (CDS) from alignment at sc0000233_pilon:556711..558678- >XLOC_020450 ID=XLOC_020450|Name=XLOC_020450|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3936bp|location=Sequence derived from alignment at sc0000233_pilon:556711..558678- (Clytia hemisphaerica_ch_hm2_pilon)
AGCATGTCAAATGGTAATGCCAATAGGAATGCTTATCAAAGAGAGTACAG
AAGGCGAAATAAACTTTTAGAAGAACATTTTCAAAATGTAAGCTCTGAAA
GTTCCTCAAGCACAGCAGCAATAAGTCCAGCTCAGGTTTATGATTCGCTT
TTTGAAAATGTTCAAGTGGATAGCAATCCCAACCAAAACATTTTTAGTGA
CAATCACTACAGTGATTGCAGCAGTGAGGAGAGTGCTGGTAGCGATTGCG
AAGGTGTGCTAAATTTGTTGAGAGAAGACATTGGCCTTGATGATGATGTT
AATCCACAACAGGATGCTCCTAATAATGATGATGTTGGACCTAACTTTTC
AACACAAATGTCTGAATGGATTCTTCGAAATAAAATAAACCGAACCGCTA
GTAATGAGCTTCTTGCTATTCTAAGACAAAATGGTCATGAAGAGCTACCT
TTATGCACGCGCACGCTTTTAAAAACACCGCGGAACTATGCAATAATAGA
AAAATGTGGCGGTAGCTACATTTATCTTGGCTTGGGTAGGGGTATCTCAA
GAGTGTTGGTGAAAGGTATTCAACTAGATCTTTGTGAAATCGACCTTATT
ATTAATGTCGATGGATTACCAATTTTCAAGTCAACAGGCTCCCAGCTGTG
GCCAATCCTTGGTCACTTTTCCGACAGTCAACCATTTACAATTGCCTTAT
TTTTTGGAACATCCAAGCCATCAAACCCACAGGAATTTATGCAGGATTTT
TTAATGGAATACACCTTTTTGAACACAGAGGGACTTGTTTTCAACAATGT
CAACTACACAGTAAAGATTAAAGCTTTTGTCTGTGATGCACCAGCACGTC
AATTCTTGAAATGCATAAAACCTCACAACGCATACCACGGTTGCGAGAGA
TGTGACATAGAAGGGAATTATGTTTCAAATAGAATGACTTTTAATGATAA
AGGTACTCTTAGAACAAGTGAAGCTTTTAAAAATTATGATTATGCTGGCA
AACATCAAATTACACTCACATGTCTTGCGGATTATGGTATTGATTGCATT
AGTCAATTTGCGCTAGATTATATGTATTTAATTTGTCTCGGAGTTGTTAA
GAGGTTAATGTCTTGTTGGAAAGAAGGATCTAGACCTTATAAATTGTCAG
CTGGCCAACTCACATTGATATCAAACTCTTTAAACCAAATGAAAGGGCTT
CTTCCTTCTGAGTTTGCAAGGCAACCACGTGATCTTAAGGAACTGAAACG
GTGGAAGGCAACAGAGTTTCGTGAATTTTTACTATACACCGGACCTGTTG
TCTTAAAGAATATTTTATCAGAGGAGCAGTATGAACACTTTCTTGCACTT
TCAATTGCTATGAGAATTGTACTTGAAGAAGATTGTGCATTTAGATCAAA
GTACAGTGATTATGCAAAAGAGTTGTTAAATTATTTTGTTCCAATGTGTA
AAGAACTTTATGGTGAAACTTTTGCTGTATACAACGTACATTCGTTATAT
CATATTGTAGATGATTCAACATTCTTTAACTGTTCCCTTGACAAAGTATC
ATCCTTTCCATTTGAAAACCATCTGCAAGTCTTCAAGAAATTTATTCGTA
AGGCTCAGAATCCACTTAGTCAAATGGTGAGGCGAATAGAAGAATTTGAC
AACTTTTCTGTTGATATGTGTTCAAAGAAAACGATTCAATGTAAAATTTC
TACAAATGGTAAAGATTCATGGTTTATGCTTGATGATGGAATTTTTGTTC
AGCTACAAGGCAATGTAACATCAGCAACACCAGATTTCAAGGTTTTCAAA
AAGAGGATGTATCGTCATCTATACAAGGTACCATGTAATTCCAAATCACT
TGGAATTGTTTTCATCAATGGAAGATGTAACTACAAAGTGAAGAAACTTC
CAAAGTATCGTCTTCATCGTAAAGCTGTTTGTCTTCCATACAAAGATGGG
AAAGTTCTGACCCCACTGAGCATGTCAAATGGTAATGCCAATAGGAATGC
TTATCAAAGAGAGTACAGAAGGCGAAATAAACTTTTAGAAGAACATTTTC
AAAATGTAAGCTCTGAAAGTTCCTCAAGCACAGCAGCAATAAGTCCAGCT
CAGGTTTATGATTCGCTTTTTGAAAATGTTCAAGTGGATAGCAATCCCAA
CCAAAACATTTTTAGTGACAATCACTACAGTGATTGCAGCAGTGAGGAGA
GTGCTGGTAGCGATTGCGAAGGTGTGCTAAATTTGTTGAGAGAAGACATT
GGCCTTGATGATGATGTTAATCCACAACAGGATGCTCCTAATAATGATGA
TGTTGGACCTAACTTTTCAACACAAATGTCTGAATGGATTCTTCGAAATA
AAATAAACCGAACCGCTAGTAATGAGCTTCTTGCTATTCTAAGACAAAAT
GGTCATGAAGAGCTACCTTTATGCACGCGCACGCTTTTAAAAACACCGCG
GAACTATGCAATAATAGAAAAATGTGGCGGTAGCTACATTTATCTTGGCT
TGGGTAGGGGTATCTCAAGAGTGTTGGTGAAAGGTATTCAACTAGATCTT
TGTGAAATCGACCTTATTATTAATGTCGATGGATTACCAATTTTCAAGTC
AACAGGCTCCCAGCTGTGGCCAATCCTTGGTCACTTTTCCGACAGTCAAC
CATTTACAATTGCCTTATTTTTTGGAACATCCAAGCCATCAAACCCACAG
GAATTTATGCAGGATTTTTTAATGGAATACACCTTTTTGAACACAGAGGG
ACTTGTTTTCAACAATGTCAACTACACAGTAAAGATTAAAGCTTTTGTCT
GTGATGCACCAGCACGTCAATTCTTGAAATGCATAAAACCTCACAACGCA
TACCACGGTTGCGAGAGATGTGACATAGAAGGGAATTATGTTTCAAATAG
AATGACTTTTAATGATAAAGGTACTCTTAGAACAAGTGAAGCTTTTAAAA
ATTATGATTATGCTGGCAAACATCAAATTACACTCACATGTCTTGCGGAT
TATGGTATTGATTGCATTAGTCAATTTGCGCTAGATTATATGTATTTAAT
TTGTCTCGGAGTTGTTAAGAGGTTAATGTCTTGTTGGAAAGAAGGATCTA
GACCTTATAAATTGTCAGCTGGCCAACTCACATTGATATCAAACTCTTTA
AACCAAATGAAAGGGCTTCTTCCTTCTGAGTTTGCAAGGCAACCACGTGA
TCTTAAGGAACTGAAACGGTGGAAGGCAACAGAGTTTCGTGAATTTTTAC
TATACACCGGACCTGTTGTCTTAAAGAATATTTTATCAGAGGAGCAGTAT
GAACACTTTCTTGCACTTTCAATTGCTATGAGAATTGTACTTGAAGAAGA
TTGTGCATTTAGATCAAAGTACAGTGATTATGCAAAAGAGTTGTTAAATT
ATTTTGTTCCAATGTGTAAAGAACTTTATGGTGAAACTTTTGCTGTATAC
AACGTACATTCGTTATATCATATTGTAGATGATTCAACATTCTTTAACTG
TTCCCTTGACAAAGTATCATCCTTTCCATTTGAAAACCATCTGCAAGTCT
TCAAGAAATTTATTCGTAAGGCTCAGAATCCACTTAGTCAAATGGTGAGG
CGAATAGAAGAATTTGACAACTTTTCTGTTGATATGTGTTCAAAGAAAAC
GATTCAATGTAAAATTTCTACAAATGGTAAAGATTCATGGTTTATGCTTG
ATGATGGAATTTTTGTTCAGCTACAAGGCAATGTAACATCAGCAACACCA
GATTTCAAGGTTTTCAAAAAGAGGATGTATCGTCATCTATACAAGGTACC
ATGTAATTCCAAATCACTTGGAATTGTTTTCATCAATGGAAGATGTAACT
ACAAAGTGAAGAAACTTCCAAAGTATCGTCTTCATCGTAAAGCTGTTTGT
CTTCCATACAAAGATGGGAAAGTTCTGACCCCACTG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000233_pilon | genome | sc0000233_pilon:556711..558678 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1120-1983:865 |
| Aaloc | 973-1116:1009 |
| Aaloc | 598-969:1381 |
| Aaloc | 265-594:1711 |
| Aaloc | 4-261:1969 |
|
