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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000156_pilon:430465..434587+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_020184 ID=XLOC_020184|Name=XLOC_020184|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4123bp|location=Sequence derived from alignment at sc0000156_pilon:430465..434587+ (Clytia hemisphaerica_ch_hm2_pilon)
atgTTGATAATTTTCAGGATGAATTTTCTACATCACTTTCTCATTCATTT
TTACTTTATTCATCGTCAACATATCTTCGCAGCATCAGCAGACGATGGGT
TTTTTCCTGATCCAGTTATCAGAGAAGTGATACAACACCATAAATCGAAC
GCATTTAGCATAGTAACCATCAAAtatatcaaattcataaaagGGACACG
CGGCTATATATCAGCGGCTAAGCTAGGAAGAGGATGCAGTAAGAACGGGT
TGAACAGAGTAGATTGCCCTGGTAGGTGCATGGATTACAACAGCTGTATA
TCTTGGTCGTTTACTGGGACTTCGTGCATTTGTTTTGAAACTGTTCCTCG
AGCTTCACCTCGTAAAAGCGTTTTCTCTTCAGGCTGGCGAATTTATGAGC
TAAAGGTTTGTAACGATCATTCTTCATCAACTTCGTTCCCAGTGCCCTCA
CCGTTTGATCAAAACGGGTACATTATCGCCCTTATCGGACAGAGAAATGt
cggacaaattttttgaagatgacgaaaattttaTCCGACGAATAATTTAG
ACCGACGAAAGAAAAGTATTTTAGGCTAAAACTTGTGTTTCTTTGGACAA
AAGTGGGTGACCAACCGATAAGGTACCCTTGCCATTAAATTTTGAAGTTA
TTATTGAATAAGTAAAAAATAGTAATTTTTATGATTACGTCGTAAACAAC
TCCAGTCTAGGAGTTTTTAAAGGTGGTTTGAGAGctctttcttttacttt
tagaATCCTTGCACTGAGAATTTAAATTTATGCGAGCATGGAAGCATTTG
TTCACCTCATCGTTTGACCAAAACATACGATTGCATCAACTGTCTTCCAC
CTTATTCGGGAAAGCATTGCAATGAGTCAGGTATATAAGTCatcttttaa
ttttgatgattctCCCACGGACTGGGGACGAGTATATTTTCAACAAACTT
AtgaaatgtttacatttttatgtGGAAAATCCGTCCATCActtttaaaaa
cagtttttgaatagttttcacaggatacacgttttttatataagaacaaa
ctatataagaacataaggcttcgatggccaaaatgttaagaacaagttaa
gaacattctaaggcttcgtggactctaaaacagccaatttcttaggaaaa
taggaaaaatggtcacaaaatagtgaaattaagaatattttaagaacatt
tttaggcttaaaacccaaaaagttaagaacatccgaaggcttcaaaaatt
ttggatgttcttataaaaaaaacgtgtacacgaCTAACTAAATTGGTTAT
CTACGAGCTGAACTCAATTAATCATATGGAAGAGGTGGGGCTTGGAATAA
TATACTTTCGAACACATCTAGAGAGGTTTAAAGGCCTTTAAAGATAGAGT
TTGTCAACCCAGAGTGAAAGACACATTTTAAGTTTATCGTGGCATGCATC
ACGagatttcatgaaaaatatcatCATATATTCCTTCTCTCGTTATAGAT
ACACTTCCACCATCTATCAATCTACCACTTCACGAAGGTTAGAATAAAAA
CTATATAACTCTTACTTTTATGGGAGGGGGTAAATTCacagtgtttaaaa
aaatagaGAAGAAAATTTgagagagagagaATAAGCCTTCTCCTATAATG
GGGGATAGGCCTCACACCTAAAGTGTGAGGATCACAGCGcatatgcaaaa
aaaaatacttctaTCAAAAGCTATCaaaaaaaaTGTAGAGGAAATACTAG
TGATATGTTAGATTTTCATAGAATGAACAAGGCTTCTTCATGAAAGTCTG
TTCAAGGCCAGTAAATGCCACCTGTCTTTGTCTTGCCTTGTTAAGGCAGT
TCATTAAGGAACATCCATATGTAAAATTCGGTGCACCTCTTGGTCTTTTT
GACCTAACCCAGCACGATAACATTTTACGTGGTAGTCGTGACCATGGCAT
ACGAATAACGTGACCAGCCCAACGGAGTTGTTGTTGACAAATATATGAAT
CGATTGATTCAAGTGAAAGTCTATCAACTAGGTCAACAGTTCGTAAGTGA
TCTCTTAGTGATATATGACAGATAGTTCTTATACATCGGCGATGGAAGCT
TCTTAAACGATTCAGAAGTTTCACAGCGAGGCTCCAGCTTTCGACCCCAT
AGATAGAAAGCTCTCTTCCTAATCAGCATTCGGTTTATATACCTTAAGAA
TGAAGTGGTCTTGAACTATAGCCAAGAGACCATGGCCCGGTAAAACTGCC
TTTTCAGAAGGCGAAATGGCGTTACGTAATGAACATatataatttctttt
aaattgaaCTAGTGGGATGGTGTGATGGTTGAGACAATAAGTTGAGATAA
TGTGGTCTAGTTTTAATAGATCTTTTCTGTGTTAAGATGTTATAATGTCC
AGTTCATGTCCAATTATTTCTTTTAGATATTCTATTCGGGCGGAACATAT
CATGCCGCATGATGAGAAATTACTTCACAATGCCAAACCATTTAATCGAC
GTTTGGATTCATCCATGGCGGGATcacaggaaaatcaaagtcacgTGTGA
AGGTGAGAGACAAAGTTTGTTGATTCCCCAATTTTCCCAGACTTTTGTCT
TAAACAGAACTCCTTTTAAGGGTGAGCAAGGGGCTAATATACAGTCGAAG
CTCCAATCAGCGGACACCTCAAGTGGAGGACAGCTCTGATTAGTggacac
agattttttttccCGTTCCAGTGTTAGTGACCTTCACAATGTTCCAAAAG
GCGGATAGCTCTAAGTCTAACCTCCCATGGTGTCCGCTAGTAATTAGATC
TTCGAGCATATTTCCATGAAATCATCACTTATACGgaaacaaccaaaaca
aaccgGGTGTTCTGTAAACTAATGTGGTGAAGTAATGAAACTAGTGGCAA
ACATTTGGCTTTTTGAGGTATTTACAtagaaaagattacgtaatgGATAT
ATGTGTCATAAAAGAGCTACATCAAATTATACATTGATAGGAGTTTGTTT
ACAAGTTCTTATCTGACCCTTTATCAAAAATGGAGCCGCTCTTCCAGAAA
CGAGTGTGATGTTTCGATTTGGTATTAAAGCTTTCTAGCCAACACATTTA
CTCTCAAAAGCATCGGGGGCAGTTAttatcttttgtttttgctGACTTTC
TGCTATTTAAAAAAGTCTATACAACCTTCAACACAgatgatatttttctt
tcatttgaaaataaattctttttagGAAGGTACATGACAGTTTCTTTTAT
CCACACTAATCAAAATGTGAACGAGTTGAATTCAACCAACCTAACAGACG
GCTTGGACCTTACCCACGGCGGCGGCGAGAATCGAGCCCATACTTCTTTC
CTACAAGCGTTGGAAAATGTGATCCAATTTGACCAGATACATTTCCAATG
TCGGCAGCAAAGCACAGGTTTGAAGGCTACATTGAAGTCAATGCTTACAA
CCACAAATGCCCATTTTAATGTACTCGATTATTTCATTGGTAAAAGTAAT
ACGTCTCCTAAGGTTAAGATGATGGATAAATCAACCGACATATTCGATGG
ATCGTGGGATTTGGTTGGAGGTAGCGCTTCTGATGTTTCTGGTGCTCTTG
ATATCGAGGAAAGAACATTTAAGAATGTTGCACTTAGAATAAATGGATAC
AACATCACTTTTGGACCTAATTCGCAACAGTGTTTTGGACAAGAAGGCGA
TTTTTCGGAGTTCCGGGTGACAGTGAGCTAAATAAAACCATATCCTGCGT
CTGCAATTTtgaattctgtaaaaatatattGTCACAgcacaaaataataa
aagagttagttttgaaatattcgaaggTTCAATGTTTTGAACGCTATAGT
CTGTTTCCAAAGCACCATGGTAGAATCGaagtcaaaatttacaaatacaA
ATGCCCATTTTAATGTACTCGATCATTTCATTGGTAAAAGTAATACGTCT
CCTAAGATTAATAGGATGGTAAATCGCCCGACATATTCGATGGATCGTGG
GATTTGGTAAGAGATAGAGCTTCTGATTTCTCTGGTTTTCTTGATGTTGA
GGAGAGAACATTTAAAAATATCGGACTTGCAATAAATGGATACAATATTA
CTTTTGGATCTAATGTTCAATAA Coding sequence (CDS) from alignment at sc0000156_pilon:430465..434587+ >XLOC_020184 ID=XLOC_020184|Name=XLOC_020184|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000156_pilon:430465..434587+ (Clytia hemisphaerica_ch_hm2_pilon)
atgTTGATAATTTTCAGGATGAATTTTCTACATCACTTTCTCATTCATTT
TTACTTTATTCATCGTCAACATATCTTCGCAGCATCAGCAGACGATGGGT
TTTTTCCTGATCCAGTTATCAGAGAAGTGATACAACACCATAAATCGAAC
GCATTTAGCATAGTAACCATCAAAtatatcaaattcataaaagGGACACG
CGGCTATATATCAGCGGCTAAGCTAGGAAGAGGATGCAGTAAGAACGGGT
TGAACAGAGTAGATTGCCCTGGTAGGTGCATGGATTACAACAGCTGTATA
TCTTGGTCGTTTACTGGGACTTCGTGCATTTGTTTTGAAACTGTTCCTCG
AGCTTCACCTCGTAAAAGCGTTTTCTCTTCAGGCTGGCGAATTTATGAGC
TAAAGatgTTGATAATTTTCAGGATGAATTTTCTACATCACTTTCTCATT
CATTTTTACTTTATTCATCGTCAACATATCTTCGCAGCATCAGCAGACGA
TGGGTTTTTTCCTGATCCAGTTATCAGAGAAGTGATACAACACCATAAAT
CGAACGCATTTAGCATAGTAACCATCAAAtatatcaaattcataaaagGG
ACACGCGGCTATATATCAGCGGCTAAGCTAGGAAGAGGATGCAGTAAGAA
CGGGTTGAACAGAGTAGATTGCCCTGGTAGGTGCATGGATTACAACAGCT
GTATATCTTGGTCGTTTACTGGGACTTCGTGCATTTGTTTTGAAACTGTT
CCTCGAGCTTCACCTCGTAAAAGCGTTTTCTCTTCAGGCTGGCGAATTTA
TGAGCTAAAGaATCCTTGCACTGAGAATTTAAATTTATGCGAGCATGGAA
GCATTTGTTCACCTCATCGTTTGACCAAAACATACGATTGCATCAACTGT
CTTCCACCTTATTCGGGAAAGCATTGCAATGAGTCAGaATCCTTGCACTG
AGAATTTAAATTTATGCGAGCATGGAAGCATTTGTTCACCTCATCGTTTG
ACCAAAACATACGATTGCATCAACTGTCTTCCACCTTATTCGGGAAAGCA
TTGCAATGAGTCAGATACACTTCCACCATCTATCAATCTACCACTTCACG
AAGATACACTTCCACCATCTATCAATCTACCACTTCACGAAGATATTCTA
TTCGGGCGGAACATATCATGCCGCATGATGAGAAATTACTTCACAATGCC
AAACCATTTAATCGACGTTTGGATTCATCCATGGCGGGATcacaggaaaa
tcaaagtcacgTGTGAAGATATTCTATTCGGGCGGAACATATCATGCCGC
ATGATGAGAAATTACTTCACAATGCCAAACCATTTAATCGACGTTTGGAT
TCATCCATGGCGGGATcacaggaaaatcaaagtcacgTGTGAAGGAAGGT
ACATGACAGTTTCTTTTATCCACACTAATCAAAATGTGAACGAGTTGAAT
TCAACCAACCTAACAGACGGCTTGGACCTTACCCACGGCGGCGGCGAGAA
TCGAGCCCATACTTCTTTCCTACAAGCGTTGGAAAATGTGATCCAATTTG
ACCAGATACATTTCCAATGTCGGCAGCAAAGCACAGGTTTGAAGGCTACA
TTGAAGTCAATGCTTACAACCACAAATGCCCATTTTAATGTACTCGATTA
TTTCATTGGTAAAAGTAATACGTCTCCTAAGGTTAAGATGATGGATAAAT
CAACCGACATATTCGATGGATCGTGGGATTTGGTTGGAGGTAGCGCTTCT
GATGTTTCTGGTGCTCTTGATATCGAGGAAGGTACATGACAGTTTCTTTT
ATCCACACTAATCAAAATGTGAACGAGTTGAATTCAACCAACCTAACAGA
CGGCTTGGACCTTACCCACGGCGGCGGCGAGAATCGAGCCCATACTTCTT
TCCTACAAGCGTTGGAAAATGTGATCCAATTTGACCAGATACATTTCCAA
TGTCGGCAGCAAAGCACAGGTTTGAAGGCTACATTGAAGTCAATGCTTAC
AACCACAAATGCCCATTTTAATGTACTCGATTATTTCATTGGTAAAAGTA
ATACGTCTCCTAAGGTTAAGATGATGGATAAATCAACCGACATATTCGAT
GGATCGTGGGATTTGGTTGGAGGTAGCGCTTCTGATGTTTCTGGTGCTCT
TGATATCGAGGAGAGAACATTTAAAAATATCGGACTTGCAATAAATGGAT
ACAATATTACTTTTGGATCTAATGTTCAATAAGAGAGAACATTTAAAAAT
ATCGGACTTGCAATAAATGGATACAATATTACTTTTGGATCTAATGTTCA
ATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156_pilon | genome | sc0000156_pilon:430465..434587 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1081-1152:4052 |
| Aaloc | 700-1080:3228 |
| Aaloc | 574-696:2429 |
| Aaloc | 535-570:1501 |
| Aaloc | 406-531:754 |
| Aaloc | 1-405:1 |
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