XLOC_020167.3 (mRNA) -

Overview
NameXLOC_020167.3
Unique NameXLOC_020167.3
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000345_pilon:316149..316829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_020167.3 ID=XLOC_020167.3|Name=XLOC_020167.3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=681bp|location=Sequence derived from alignment at sc0000345_pilon:316149..316829+ (Clytia hemisphaerica_ch_hm2_pilon)
CATCACTCAAACATCATTGAAGGTCGGACCATCTACTTCAACTTGGGATC
AAAATTCTTCAAGCTGACTTCATCTAACGGCCAGGTTTGTGATATACTTA
CTATTCTTATAGCACTTTAGTACAAAGTTTGTGACAAAGAATTAATATTT
AGTAGATTATAGCtaatgatttttcttgtctCTATTGTTCAGGTACTCTG
TGAAGAAGAACTCAACCTATCGACGGATCAAGAAGAAGCCGACACTAAAG
TGTTCCTGTGTGGAAAACATGCTGCTCGTCAACATCTAGCCGAGAAAGTT
TGCATCAAGACCGTCGACAGTGACATATCGATTTATGCCATCTATTTCCA
ATCCCATTTCAATGGAACAAAGTTGTACGTCGAGACTGGTTCGGGTGAGA
ATCTCCGAACCCTTGATATCACGGCCATTGCCAAGCATCTTGGAGAAGGT
TGTTGTAAAGTGTTGCCAGCACTCCATGCTTTCACTGGCAATGACTATAC
CAGCGCTTTCCATGGTATTGGGAAGGTCAAAGCCATGAAACTGATCAAAG
ACTCAAAGAAATTTCGGAAAGCATTCAAACGAATCGGTGAGAGCTTTGAT
TTTAATGCGAAGTACTTTCCCGTCATCGAGGAGTTTGTCTGCATGTTGTA
TGGTGCAAAAGGATGTACAAACGTCAACGAG

Coding sequence (CDS) from alignment at sc0000345_pilon:316149..316829+

>XLOC_020167.3 ID=XLOC_020167.3|Name=XLOC_020167.3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000345_pilon:316149..316829+ (Clytia hemisphaerica_ch_hm2_pilon)
CATCACTCAAACATCATTGAAGGTCGGACCATCTACTTCAACTTGGGATC
AAAATTCTTCAAGCTGACTTCATCTAACGGCCAGCATCACTCAAACATCA
TTGAAGGTCGGACCATCTACTTCAACTTGGGATCAAAATTCTTCAAGCTG
ACTTCATCTAACGGCCAGGTACTCTGTGAAGAAGAACTCAACCTATCGAC
GGATCAAGAAGAAGCCGACACTAAAGTGTTCCTGTGTGGAAAACATGCTG
CTCGTCAACATCTAGCCGAGAAAGTTTGCATCAAGACCGTCGACAGTGAC
ATATCGATTTATGCCATCTATTTCCAATCCCATTTCAATGGAACAAAGTT
GTACGTCGAGACTGGTTCGGGTGAGAATCTCCGAACCCTTGATATCACGG
CCATTGCCAAGCATCTTGGAGAAGGTTGTTGTAAAGTGTTGCCAGCACTC
CATGCTTTCACTGGCAATGACTATACCAGCGCTTTCCATGGTATTGGGAA
GGTCAAAGCCATGAAACTGATCAAAGACTCAAAGAAATTTCGGAAAGCAT
TCAAACGAATCGGTGAGAGCTTTGATTTTAATGCGAAGTACTTTCCCGTC
ATCGAGGAGTTTGTCTGCATGTTGTATGGTGCAAAAGGATGTACAAACGT
CAACGAGGTACTCTGTGAAGAAGAACTCAACCTATCGACGGATCAAGAAG
AAGCCGACACTAAAGTGTTCCTGTGTGGAAAACATGCTGCTCGTCAACAT
CTAGCCGAGAAAGTTTGCATCAAGACCGTCGACAGTGACATATCGATTTA
TGCCATCTATTTCCAATCCCATTTCAATGGAACAAAGTTGTACGTCGAGA
CTGGTTCGGGTGAGAATCTCCGAACCCTTGATATCACGGCCATTGCCAAG
CATCTTGGAGAAGGTTGTTGTAAAGTGTTGCCAGCACTCCATGCTTTCAC
TGGCAATGACTATACCAGCGCTTTCCATGGTATTGGGAAGGTCAAAGCCA
TGAAACTGATCAAAGACTCAAAGAAATTTCGGAAAGCATTCAAACGAATC
GGTGAGAGCTTTGATTTTAATGCGAAGTACTTTCCCGTCATCGAGGAGTT
TGTCTGCATGTTGTATGGTGCAAAAGGATGTACAAACGTCAACGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_020167.3XLOC_020167.3-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345_pilongenomesc0000345_pilon:316149..316829 +
Properties
Property NameValue
Aaloc85-573:193
Aaloc1-84:1