|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000334_pilon:319838..323252+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_019333 ID=XLOC_019333|Name=XLOC_019333|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3415bp|location=Sequence derived from alignment at sc0000334_pilon:319838..323252+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCACTATGTTATCAAAAGTAttcatttcaataatttttttgacgat
atttataaattttggAAACACGCTGTTTTTATCCAGTGGGGTTTCTTCAT
TGGTGACATTTACAACAGCACATAGTCAACATGATAATGCTGATGAATCA
ACACATCCTGATGCTTCAAAAATCAAGCCAAATTCATCAGTGAGTATGAG
AGAAACTGGGTTGCTGTCTTTTTAGGCTCGAAAAATAGGACTAAgttata
aataaatttgaaaattattataattccatcattttcttttttttaatacg
cTATGTATAATACGCTACTATATAGCAACCCAATCTATAATACATTGTGT
TTTCTCGAGGTATTTATAACTAATTCCTTGTTTTTAATTGCTAAAGATAC
TGGCAATCGCCATGACTCAATCTGCACCATCATCGACACATTTTAAAAGA
ATGGAAAAGGACGAAAGCTCAGCTTTCCATTCTTCCTCATCATTTCGAAA
GAAGATTAGTTCAATATCTGATGTTTCAAAAGGGAAGATGTATCGTAACA
GCGAAAAATCTGTCTCTATACCACCAGAAAGCAGTACTGGCAAATCAACA
GTCTCATCTACAACCACTGTCACTCCACAACCAACAAACCAGCCAATCGC
AACAGAAGCAATAGAAGTAGTTCATACACATGTCAACATGAATGCTTCAT
TTCTGAAGGAACTTGATGAACTGGACGCCTACATGATTAACATTTCAAAG
GTCTGCTACagattaccgtattacttcgaataaacgcccctttcATTTAA
ACACCCCCCTCGAATAAGCGCAAAACAGTCTTATTAGACCGAGGGTAAAA
GAGCCCTAGAAAAATTTAGACAAACGTAAGTCTAGCTTCTTTCCAATTAA
TTCAAAGAAAGCCTCTTTGGAGACTTAACTTACAAAGTTTACAGTGTGta
atttcaagaacttttctTTAATACTTTTAGTACGAATCAGAATGCGGAAT
GGTCAAGAGTGAAGCACTATCATTTTGCGAAGACATCGACTATCCTGTAC
CAAAGGTAGATCctacaaaaataatttccttAGTGAAAAAAGTACAACGA
TTCCTACTTACTAGGAAAGTAGCAAAAGTCAGATCCGATTATAATGAACT
GTTTCCATGTTTCAAAGCTTTAGTAAccggaaaaattgaccaaagaAGCT
GTGAGAAAATACACTGAAAGTTTGTCTTTATTTGGAAACTATAGCTCTCA
TTCTTATCAGtattgaatttttgtaaataatccCGTGGAGGTAGAATCTA
AAACTCCCAGctagtaaaaacaaaaacttttcaatcCCTCAACAGAACTA
CAACGTACATTCTAACTTAATTGAAAAATTGTACACCAGGTCTTTGGTTT
AGTCTTGGTCTATATGGAACCTTTGAAAAGTGTGAAATTAACTTCTGTCT
TATAGGTTAGAAGTCCAAACAACTGTGGACCTTTTTGTACCGGTCATTTC
AACACCGGCTCCTATTACTGCTGTATATAGGTGCTCTAGCGGGTGCAGTA
GTGTAGTGATCATCGTTCTTGACTTCCGTGCTGGAggtcggggttcgatt
cccactcggtgctgcgattcacttggcaagtgaatgtaccttggcccggg
tcaacccataccatgtgaggggaatagggtaccattactctgatacaaga
gtatggggaaATATGCTGgacattgaatgtggtgtggtgatggCACTCAT
ATGTACAGTACCTGCGAGAACACaaggttctcccgtactgtTCGAGTATT
ATCATCGATGCAGTacggctctgatgtgtcgcgaacgcagagtacaatgt
ctggttagcgctgtgatttccctatctaggggtaggtatcccgggatagg
gcccggtccgatgatatcggaTGGTCAGCTtctctctcttctctctctct
cATATAGGTGCTCTTAACTTTTCTCTTTCAGCAACTTGCGTTAGCTCCAT
ACTTTCAAGATAATATGGCAAAAGCAGCCGTAGAAACTTTAAGCATCCTC
ACTGAAGGAGGGACAACGCAATGCGAGAGCGAACTCAAAAAGGTACGAAA
ATTTTGTCAccaaaaatctctttttatcCAGGTCCCATGATTTACGGATT
TTCCCAAATTTGATAAATACGTTTTTTAACTCACCAATTTCCAATAGAAT
TGACCTTAATGTTCCAACAAAAAAGGGTTCAACGTGTTATACATGCACCA
AGGATTTTAATGTAATTTTTCCCACACAAATGTTTTCAATTTAATACTCA
ACCACTCATCGTTACAAAGCAAATTTCTCATTTTACTCTAGGTATTTTGC
AGCCAAAAATTCCCTAGATGTAACGATTATAAATTAGAAATGTACTGGCA
AGCAAACGATACAAGTGATTGTTCAATTGCATTGTCAAAATGTTCTGCAA
AGAGCGTCACCACTCTCAAGAAGATGAAGTTGTGTGAAAAATTATCGAGA
GGAGCCGTCTCAATAAATAAATGTATGTGTATAAAGAGTAATTATAGGGG
ATTTTTGTTCATCAAAATGTTCCAAACAGAAGCTAGATCCCCAGTTTATA
AGTCCTGGACACACTGAACGTCTTGACAATAACATTCTTCATTTCTTCAG
ATTCACCATATATCTGATATTAAACTACTTGTTAAACCTTCTAACGCCtg
attaaatttcatttttcatgtaTATGGACTTGGAAGAATGTGGCTAAATT
TGCCAGATCTATGTATCTTGTTTTTTACCATTTCAACTTTACAGGTATAG
CACCGTTGAAGCCGTCAAAGAAAGACTTATGTGCTCATCACAACAATGTG
TCCACGTGGTTATATCACAGCAATGTTGAAATCAACTCCTTACTTTACTT
CCAATATTCATTAAACGACAAACTTTCTATACAATGTAAATCGAACCTTA
CCAAACACATGTGTTCTTTTGGTCTACAATGTTTTTCTGGTGATGGTATT
TTTGTTAACTCGAGAAGTTATTTGAGCAATGTTCAACAAAGATGCGAAGA
AACTGTCAAAGCGTGGTAAGTAGTGACTTGATTCTAAATTACACTTCTGT
ctcattgtttcaacgttcaactTTCTATGGACGGTGTGGTTGTTAAAGCA
ATGttgtgttttaaatttttttttggttcaacGCCCGGGTATGCGAGGCT
ACACAATATCTTCCTTTGTTTCAAGCGTAAAACTCTAACCTTTTGTTGTG
TATAGACTACGTTTTTCCGATTCCAAAAAAGTGctgttacatttttattt
tcaatatttctaagttctatctttcaaaaattcattttgtctttgtttta
gtGCGAATCAAGAACTATCATCAGCATTGACACAAATGTTCCTGAATTGC
AAAAAGTTTGTATGA Coding sequence (CDS) from alignment at sc0000334_pilon:319838..323252+ >XLOC_019333 ID=XLOC_019333|Name=XLOC_019333|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0000334_pilon:319838..323252+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCACTATGTTATCAAAAGTAttcatttcaataatttttttgacgat
atttataaattttggAAACACGCTGTTTTTATCCAGTGGGGTTTCTTCAT
TGGTGACATTTACAACAGCACATAGTCAACATGATAATGCTGATGAATCA
ACACATCCTGATGCTTCAAAAATCAAGCCAAATTCATCAATGTTCACTAT
GTTATCAAAAGTAttcatttcaataatttttttgacgatatttataaatt
ttggAAACACGCTGTTTTTATCCAGTGGGGTTTCTTCATTGGTGACATTT
ACAACAGCACATAGTCAACATGATAATGCTGATGAATCAACACATCCTGA
TGCTTCAAAAATCAAGCCAAATTCATCAATACTGGCAATCGCCATGACTC
AATCTGCACCATCATCGACACATTTTAAAAGAATGGAAAAGGACGAAAGC
TCAGCTTTCCATTCTTCCTCATCATTTCGAAAGAAGATTAGTTCAATATC
TGATGTTTCAAAAGGGAAGATGTATCGTAACAGCGAAAAATCTGTCTCTA
TACCACCAGAAAGCAGTACTGGCAAATCAACAGTCTCATCTACAACCACT
GTCACTCCACAACCAACAAACCAGCCAATCGCAACAGAAGCAATAGAAGT
AGTTCATACACATGTCAACATGAATGCTTCATTTCTGAAGGAACTTGATG
AACTGGACGCCTACATGATTAACATTTCAAAGATACTGGCAATCGCCATG
ACTCAATCTGCACCATCATCGACACATTTTAAAAGAATGGAAAAGGACGA
AAGCTCAGCTTTCCATTCTTCCTCATCATTTCGAAAGAAGATTAGTTCAA
TATCTGATGTTTCAAAAGGGAAGATGTATCGTAACAGCGAAAAATCTGTC
TCTATACCACCAGAAAGCAGTACTGGCAAATCAACAGTCTCATCTACAAC
CACTGTCACTCCACAACCAACAAACCAGCCAATCGCAACAGAAGCAATAG
AAGTAGTTCATACACATGTCAACATGAATGCTTCATTTCTGAAGGAACTT
GATGAACTGGACGCCTACATGATTAACATTTCAAAGTACGAATCAGAATG
CGGAATGGTCAAGAGTGAAGCACTATCATTTTGCGAAGACATCGACTATC
CTGTACCAAAGTACGAATCAGAATGCGGAATGGTCAAGAGTGAAGCACTA
TCATTTTGCGAAGACATCGACTATCCTGTACCAAAGCAACTTGCGTTAGC
TCCATACTTTCAAGATAATATGGCAAAAGCAGCCGTAGAAACTTTAAGCA
TCCTCACTGAAGGAGGGACAACGCAATGCGAGAGCGAACTCAAAAAGCAA
CTTGCGTTAGCTCCATACTTTCAAGATAATATGGCAAAAGCAGCCGTAGA
AACTTTAAGCATCCTCACTGAAGGAGGGACAACGCAATGCGAGAGCGAAC
TCAAAAAGGTATTTTGCAGCCAAAAATTCCCTAGATGTAACGATTATAAA
TTAGAAATGTACTGGCAAGCAAACGATACAAGTGATTGTTCAATTGCATT
GTCAAAATGTTCTGCAAAGAGCGTCACCACTCTCAAGAAGATGAAGTTGT
GTGAAAAATTATCGAGAGGAGCCGTCTCAATAAATAAATGTATTTTGCAG
CCAAAAATTCCCTAGATGTAACGATTATAAATTAGAAATGTACTGGCAAG
CAAACGATACAAGTGATTGTTCAATTGCATTGTCAAAATGTTCTGCAAAG
AGCGTCACCACTCTCAAGAAGATGAAGTTGTGTGAAAAATTATCGAGAGG
AGCCGTCTCAATAAATAAATGTATAGCACCGTTGAAGCCGTCAAAGAAAG
ACTTATGTGCTCATCACAACAATGTGTCCACGTGGTTATATCACAGCAAT
GTTGAAATCAACTCCTTACTTTACTTCCAATATTCATTAAACGACAAACT
TTCTATACAATGTAAATCGAACCTTACCAAACACATGTGTTCTTTTGGTC
TACAATGTTTTTCTGGTGATGGTATTTTTGTTAACTCGAGAAGTTATTTG
AGCAATGTTCAACAAAGATGCGAAGAAACTGTCAAAGCGTGGTATAGCAC
CGTTGAAGCCGTCAAAGAAAGACTTATGTGCTCATCACAACAATGTGTCC
ACGTGGTTATATCACAGCAATGTTGAAATCAACTCCTTACTTTACTTCCA
ATATTCATTAAACGACAAACTTTCTATACAATGTAAATCGAACCTTACCA
AACACATGTGTTCTTTTGGTCTACAATGTTTTTCTGGTGATGGTATTTTT
GTTAACTCGAGAAGTTATTTGAGCAATGTTCAACAAAGATGCGAAGAAAC
TGTCAAAGCGTGtGCGAATCAAGAACTATCATCAGCATTGACACAAATGT
TCCTGAATTGCAAAAAGTTTGTATGAtGCGAATCAAGAACTATCATCAGC
ATTGACACAAATGTTCCTGAATTGCAAAAAGTTTGTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000334_pilon | genome | sc0000334_pilon:319838..323252 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1183-1245:3353 |
| Aaloc | 913-1179:2797 |
| Aaloc | 730-909:2342 |
| Aaloc | 619-729:1982 |
| Aaloc | 544-618:981 |
| Aaloc | 190-543:397 |
| Aaloc | 1-189:1 |
|
