XLOC_019142 (mRNA) -

Overview


Name	XLOC_019142
Unique Name	XLOC_019142
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000023_pilon:2106720..2109161-
coding sequence from alignment at sc0000023_pilon:2106720..2109161-

mRNA from alignment at sc0000023_pilon:2106720..2109161-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_019142 ID=XLOC_019142|Name=XLOC_019142|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2442bp|location=Sequence derived from alignment at sc0000023_pilon:2106720..2109161- (Clytia hemisphaerica_ch_hm2_pilon)
AGAAACTATGCTCCAGTGAAACCAGGAAATAATCTTGACATCACCAAGGA
ATTTTCGACAGAAATTACAGACGAAATGAAACTATACTCTGAGAAAAGTA
TAGTACACATTGTTAACACAAATAGCATCACAATCATCGGTTGTCAATTT
CAAGACAATTATGCTCCAATGACAGCTGGCAATAACTTGTACATTGCTAA
CGAACACTCTGCAGAAACAACACTGGATTTACACGCGGTAATGATTTCAA
ATTCGTTTCCCGATCAATATTCTTTGATGAAAATCAAAAACATTACAATA
CAACCCGATGAAAGCTGGACATTTGATTGCCCACCGAACACAGAGGTCCA
GTATAGATATACAAACACAATATTCGAATATTTTTGTTTATCTATGAAAG
ATGGAATCTACTCAACGCAAAAATCGACTCTCAGTTGGAGCAATGGTTCA
TTTCATGTAGAAAACGTACCGATATTCGAGTGTCCCAACGAAGCCGAATG
GACGACAAAAGGTATCAAAAGTAAAGGCAATTATTGGGGATATATAAACA
ATCAGACGGGAGAAATCAATTTCCTAAGATGTCCTTCAACTTATTGTTGC
AAATCTTTGGGGCACTGTACGTCTTATGATACTTGTCGGAATGGGAGGAC
TGGTCAATTGTGTGGCTCTTGTCCAGAAGGGACAAGCATCTCTATATTCG
ATGGATTGAGGTGTACTGGTAACTCCTGCGATAACCAAATGATCTGGATA
GTGATTGCGATAGACTCGGTTGTTACATTATTGATATTCATTTTCTCGCA
CAAAATTTTCAGTATTTTCAGTAGCCTGGGACGTGAAAGGAAATCCTACA
AAGCGATGAGACCGAGAAGATATCGACCATTGAGGAACATTTCCGATAAT
GACCAACCAATAAAACAAATAGAGGGCCCTACCAGTAATGATGATCAGAG
ACATCAGATCGAAGGGAGCAGACAAAATGATCCAAACAAAGCACAAAGTG
TTGAACAAAATCTTGAAAACGAGGTATCAAGAGAGCAAAGTCTACCAAAA
CATGGACAACCATTGAAAGATTACTCACTCGAAAGCGATAGCGAATCTGA
ATCTCAAAGCAATATTTTAGCAATCACCGAACATAACGCACACAGTGAAC
ACGGTCGCACACCACATAATACTGCTGATATGAATGAACTTTGTCAAAAC
CAGCCAGACGAAAATGGATCATATCTTTCCGACTCATACAACTATACTAA
TGAACAACCCATCAAGCATGATAACGCAGCATCGACTCAAGCAATAATCA
AAATCTTGTTCAATTTTTACCAAATGGCTGGATTAATTTTACTCCAAACA
CCAGTGCAGTCAAGCAAACTCATACCTACGAATATCTTCATCACCTTATT
CTCGCTCAAGCTACAACTACCATCTTTACCATGGAACGCTTGTCCGTTTC
AAACACGCGACATATTTCTTATCGAATTCATAAAAATAACACCTCTTCTG
TTAACAATAGCACTTTTGTTCATCATCTTAACCCTATTGACTGTTTTTCA
GCGCATCAAAAGAGTGAGTAAGCCAAACGAGGAAGAAGATTTCCACCAAC
ACGCAGACGGATACAAGAAACTCCCTTTGACAATGCGTTTAAAATGTGTC
TACGCCCAACTCTTATGTTTCGGTCACACCTCTATAACACTCCTTTCATT
TCAATTTCTTCACCGTGTGACCATTGATGAGCAGCAATATCATTTCATAG
ATGCCACAATCCAATTTACGTACGAAAGCCATATAACCATGGCCTCACTC
CTCATCTTACTTCTATGGTCTATGCCGTTCATCTTTGTTCTTTACATTGC
ATCCATATGGCTTGAAGATTGTAAAATAACACCCAATCAATTCTTGATCA
TCTTAACATTTCCGCCCTTGGTCATCTTATGGTGGTGTTACAACAAAAGG
ATCGTCCAAAACGCCCAGTTAAACGCCCGAGACGCCAAGACCGCCAAACA
CTTGCTAGATATAATCCATCGACCATGCACCCTTCAAACGAACAGTGATA
AAGGAAAAATCAAAATGGTCACTGAAAGTTTTTATCTAACATCTCGGTTC
CTGTTAGTTGTTGCTTGTACGTTTGCCATACGTGCTGAAGATCGTTTATG
GTCCGTTACCGTGTGTCTTTTAATGCACCTTGTTTGTGTCCACACCTTGA
ACCCGTTCGTCACCAAACCTCTTAACACGTTCGAATCCACGTGTATTATG
AGCCTCGTTTTGATGAATATGACGTCATACATTATTCAAAGTTCTTTAGT
CGAGCATATTGTTGTTGGTGCGATTAGTGGGACTATTGTTTTATCTTTTG
CGCCGTTTAATGTTTACGTTTTGGTCTGTGTTGTGGATTTCATTCACGAT
AAGGGAATTGATTTTTACATCAAGAAACAAAATACGAAATAA

Coding sequence (CDS) from alignment at sc0000023_pilon:2106720..2109161-

>XLOC_019142 ID=XLOC_019142|Name=XLOC_019142|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4884bp|location=Sequence derived from alignment at sc0000023_pilon:2106720..2109161- (Clytia hemisphaerica_ch_hm2_pilon)
AGAAACTATGCTCCAGTGAAACCAGGAAATAATCTTGACATCACCAAGGA
ATTTTCGACAGAAATTACAGACGAAATGAAACTATACTCTGAGAAAAGTA
TAGTACACATTGTTAACACAAATAGCATCACAATCATCGGTTGTCAATTT
CAAGACAATTATGCTCCAATGACAGCTGGCAATAACTTGTACATTGCTAA
CGAACACTCTGCAGAAACAACACTGGATTTACACGCGGTAATGATTTCAA
ATTCGTTTCCCGATCAATATTCTTTGATGAAAATCAAAAACATTACAATA
CAACCCGATGAAAGCTGGACATTTGATTGCCCACCGAACACAGAGGTCCA
GTATAGATATACAAACACAATATTCGAATATTTTTGTTTATCTATGAAAG
ATGGAATCTACTCAACGCAAAAATCGACTCTCAGTTGGAGCAATGGTTCA
TTTCATGTAGAAAACGTACCGATATTCGAGTGTCCCAACGAAGCCGAATG
GACGACAAAAGGTATCAAAAGTAAAGGCAATTATTGGGGATATATAAACA
ATCAGACGGGAGAAATCAATTTCCTAAGATGTCCTTCAACTTATTGTTGC
AAATCTTTGGGGCACTGTACGTCTTATGATACTTGTCGGAATGGGAGGAC
TGGTCAATTGTGTGGCTCTTGTCCAGAAGGGACAAGCATCTCTATATTCG
ATGGATTGAGGTGTACTGGTAACTCCTGCGATAACCAAATGATCTGGATA
GTGATTGCGATAGACTCGGTTGTTACATTATTGATATTCATTTTCTCGCA
CAAAATTTTCAGTATTTTCAGTAGCCTGGGACGTGAAAGGAAATCCTACA
AAGCGATGAGACCGAGAAGATATCGACCATTGAGGAACATTTCCGATAAT
GACCAACCAATAAAACAAATAGAGGGCCCTACCAGTAATGATGATCAGAG
ACATCAGATCGAAGGGAGCAGACAAAATGATCCAAACAAAGCACAAAGTG
TTGAACAAAATCTTGAAAACGAGGTATCAAGAGAGCAAAGTCTACCAAAA
CATGGACAACCATTGAAAGATTACTCACTCGAAAGCGATAGCGAATCTGA
ATCTCAAAGCAATATTTTAGCAATCACCGAACATAACGCACACAGTGAAC
ACGGTCGCACACCACATAATACTGCTGATATGAATGAACTTTGTCAAAAC
CAGCCAGACGAAAATGGATCATATCTTTCCGACTCATACAACTATACTAA
TGAACAACCCATCAAGCATGATAACGCAGCATCGACTCAAGCAATAATCA
AAATCTTGTTCAATTTTTACCAAATGGCTGGATTAATTTTACTCCAAACA
CCAGTGCAGTCAAGCAAACTCATACCTACGAATATCTTCATCACCTTATT
CTCGCTCAAGCTACAACTACCATCTTTACCATGGAACGCTTGTCCGTTTC
AAACACGCGACATATTTCTTATCGAATTCATAAAAATAACACCTCTTCTG
TTAACAATAGCACTTTTGTTCATCATCTTAACCCTATTGACTGTTTTTCA
GCGCATCAAAAGAGTGAGTAAGCCAAACGAGGAAGAAGATTTCCACCAAC
ACGCAGACGGATACAAGAAACTCCCTTTGACAATGCGTTTAAAATGTGTC
TACGCCCAACTCTTATGTTTCGGTCACACCTCTATAACACTCCTTTCATT
TCAATTTCTTCACCGTGTGACCATTGATGAGCAGCAATATCATTTCATAG
ATGCCACAATCCAATTTACGTACGAAAGCCATATAACCATGGCCTCACTC
CTCATCTTACTTCTATGGTCTATGCCGTTCATCTTTGTTCTTTACATTGC
ATCCATATGGCTTGAAGATTGTAAAATAACACCCAATCAATTCTTGATCA
TCTTAACATTTCCGCCCTTGGTCATCTTATGGTGGTGTTACAACAAAAGG
ATCGTCCAAAACGCCCAGTTAAACGCCCGAGACGCCAAGACCGCCAAACA
CTTGCTAGATATAATCCATCGACCATGCACCCTTCAAACGAACAGTGATA
AAGGAAAAATCAAAATGGTCACTGAAAGTTTTTATCTAACATCTCGGTTC
CTGTTAGTTGTTGCTTGTACGTTTGCCATACGTGCTGAAGATCGTTTATG
GTCCGTTACCGTGTGTCTTTTAATGCACCTTGTTTGTGTCCACACCTTGA
ACCCGTTCGTCACCAAACCTCTTAACACGTTCGAATCCACGTGTATTATG
AGCCTCGTTTTGATGAATATGACGTCATACATTATTCAAAGTTCTTTAGT
CGAGCATATTGTTGTTGGTGCGATTAGTGGGACTATTGTTTTATCTTTTG
CGCCGTTTAATGTTTACGTTTTGGTCTGTGTTGTGGATTTCATTCACGAT
AAGGGAATTGATTTTTACATCAAGAAACAAAATACGAAATAAAGAAACTA
TGCTCCAGTGAAACCAGGAAATAATCTTGACATCACCAAGGAATTTTCGA
CAGAAATTACAGACGAAATGAAACTATACTCTGAGAAAAGTATAGTACAC
ATTGTTAACACAAATAGCATCACAATCATCGGTTGTCAATTTCAAGACAA
TTATGCTCCAATGACAGCTGGCAATAACTTGTACATTGCTAACGAACACT
CTGCAGAAACAACACTGGATTTACACGCGGTAATGATTTCAAATTCGTTT
CCCGATCAATATTCTTTGATGAAAATCAAAAACATTACAATACAACCCGA
TGAAAGCTGGACATTTGATTGCCCACCGAACACAGAGGTCCAGTATAGAT
ATACAAACACAATATTCGAATATTTTTGTTTATCTATGAAAGATGGAATC
TACTCAACGCAAAAATCGACTCTCAGTTGGAGCAATGGTTCATTTCATGT
AGAAAACGTACCGATATTCGAGTGTCCCAACGAAGCCGAATGGACGACAA
AAGGTATCAAAAGTAAAGGCAATTATTGGGGATATATAAACAATCAGACG
GGAGAAATCAATTTCCTAAGATGTCCTTCAACTTATTGTTGCAAATCTTT
GGGGCACTGTACGTCTTATGATACTTGTCGGAATGGGAGGACTGGTCAAT
TGTGTGGCTCTTGTCCAGAAGGGACAAGCATCTCTATATTCGATGGATTG
AGGTGTACTGGTAACTCCTGCGATAACCAAATGATCTGGATAGTGATTGC
GATAGACTCGGTTGTTACATTATTGATATTCATTTTCTCGCACAAAATTT
TCAGTATTTTCAGTAGCCTGGGACGTGAAAGGAAATCCTACAAAGCGATG
AGACCGAGAAGATATCGACCATTGAGGAACATTTCCGATAATGACCAACC
AATAAAACAAATAGAGGGCCCTACCAGTAATGATGATCAGAGACATCAGA
TCGAAGGGAGCAGACAAAATGATCCAAACAAAGCACAAAGTGTTGAACAA
AATCTTGAAAACGAGGTATCAAGAGAGCAAAGTCTACCAAAACATGGACA
ACCATTGAAAGATTACTCACTCGAAAGCGATAGCGAATCTGAATCTCAAA
GCAATATTTTAGCAATCACCGAACATAACGCACACAGTGAACACGGTCGC
ACACCACATAATACTGCTGATATGAATGAACTTTGTCAAAACCAGCCAGA
CGAAAATGGATCATATCTTTCCGACTCATACAACTATACTAATGAACAAC
CCATCAAGCATGATAACGCAGCATCGACTCAAGCAATAATCAAAATCTTG
TTCAATTTTTACCAAATGGCTGGATTAATTTTACTCCAAACACCAGTGCA
GTCAAGCAAACTCATACCTACGAATATCTTCATCACCTTATTCTCGCTCA
AGCTACAACTACCATCTTTACCATGGAACGCTTGTCCGTTTCAAACACGC
GACATATTTCTTATCGAATTCATAAAAATAACACCTCTTCTGTTAACAAT
AGCACTTTTGTTCATCATCTTAACCCTATTGACTGTTTTTCAGCGCATCA
AAAGAGTGAGTAAGCCAAACGAGGAAGAAGATTTCCACCAACACGCAGAC
GGATACAAGAAACTCCCTTTGACAATGCGTTTAAAATGTGTCTACGCCCA
ACTCTTATGTTTCGGTCACACCTCTATAACACTCCTTTCATTTCAATTTC
TTCACCGTGTGACCATTGATGAGCAGCAATATCATTTCATAGATGCCACA
ATCCAATTTACGTACGAAAGCCATATAACCATGGCCTCACTCCTCATCTT
ACTTCTATGGTCTATGCCGTTCATCTTTGTTCTTTACATTGCATCCATAT
GGCTTGAAGATTGTAAAATAACACCCAATCAATTCTTGATCATCTTAACA
TTTCCGCCCTTGGTCATCTTATGGTGGTGTTACAACAAAAGGATCGTCCA
AAACGCCCAGTTAAACGCCCGAGACGCCAAGACCGCCAAACACTTGCTAG
ATATAATCCATCGACCATGCACCCTTCAAACGAACAGTGATAAAGGAAAA
ATCAAAATGGTCACTGAAAGTTTTTATCTAACATCTCGGTTCCTGTTAGT
TGTTGCTTGTACGTTTGCCATACGTGCTGAAGATCGTTTATGGTCCGTTA
CCGTGTGTCTTTTAATGCACCTTGTTTGTGTCCACACCTTGAACCCGTTC
GTCACCAAACCTCTTAACACGTTCGAATCCACGTGTATTATGAGCCTCGT
TTTGATGAATATGACGTCATACATTATTCAAAGTTCTTTAGTCGAGCATA
TTGTTGTTGGTGCGATTAGTGGGACTATTGTTTTATCTTTTGCGCCGTTT
AATGTTTACGTTTTGGTCTGTGTTGTGGATTTCATTCACGATAAGGGAAT
TGATTTTTACATCAAGAAACAAAATACGAAATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_019142	XLOC_019142-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000023_pilon	genome	sc0000023_pilon:2106720..2109161 -

Properties


Property Name	Value
Aaloc	79-2520:2443

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XLOC_019142 (mRNA) -