XLOC_018103 (mRNA) -

Overview


Name	XLOC_018103
Unique Name	XLOC_018103
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000660_pilon:36699..43945+
coding sequence from alignment at sc0000660_pilon:36699..43945+

mRNA from alignment at sc0000660_pilon:36699..43945+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_018103 ID=XLOC_018103|Name=XLOC_018103|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7247bp|location=Sequence derived from alignment at sc0000660_pilon:36699..43945+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAAAGGCTGCCGAGATTTTCGACATGACAGGACTGCTTACTCCTATCAC
AGCGACGTTCAAGCTGGACATTCACGATCTCGTTCAACGCAAATTAGCAT
GGGATGACGAGTTACCAGCCAACCTTCGTGACATATGGATCAATCATTTC
GACCTCATGGAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCC
ACAAGATGCAACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCA
GTCCATCAATGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGAT
GGCTATTCTTGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATAC
AACACAACCAAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAG
AGGTTGTTCGAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACT
GACAATCAAATTACACTCCATTGGATTTGCAACGAAAGTCGACCACTCAA
GGAATGGGTTCGGAATCGGGTTGTGGAAATCCTACGCTTCACCAACAAGG
ACAGCTGGAAGTACATCAAATCAACAGACATGATAGCTGACCTTGGTACA
AGACGTAATCATCACTAGATCTGATCAAACCAGATTCACCTTGGTACAAC
GGATATGCATGGATGAGGAAACCATCATCAACGTTCCCCTCGCTGTCACC
AGAAGACATCTCACTGGATCAATCTGAACTCCAACAAGCATCCAAAGAAG
TACGTGCTGCTCAAGTGCATCACATCTCATCCAATCAAGACCAGCTTCAG
AGGAGGTACGTATTTTCTCCTATCTTATTGATCCAAACAAGCACAAATTC
AGTACAATCGTTCGTATTGGCGCTAGTCTTCAAATTCATCGATATCATCT
TCGATCCAAAAAGGAAACAATCTATTTCTTCTCGTACACGATCAAAATGT
ACAAACACTTCACAAAAAGCTTTAGTTATTTCAGATTCATTGCTTCGACG
AGCAGAGCAATATTTCTACAGGAAAGGAACATCAGAAGTCAAAGAGTTCG
TATCATCATCAAAGTATTCAAATACCTCAATCGAAAAGGATAGAATTCTC
ACATACACAGGACGAATTCTACCAACTGATTCTGTTACCATCATTGGGAA
GGCTACACAACGAATGCTAGATCTTCAATCGACGTCATTCTGTGTCCCAA
TCTTGGAGAAGTCATCACCAATCGCCTACAGCATCGTCAACGACATCCAT
TGGAACCACATCACTGCTTCACATTCTGGTGTGGAGACCACTTGGAGATA
TGTTCTTCAGAAAGTTTTCATCATCGAAGGAAGGAGCCTGGTCAAGTCAA
TTCGATCAACTTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCATCGAC
GTATCAATGGGACCAGTATCACCTGACAACCTGATGATTGCTCCAATCTT
CTACGTATCTCAAGTCGATTTGTGTGGTCCATTTGAATCATACTCGTATC
ACAACAAGAGGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCTGTGCT
ACTACCACCACCATCAGCATCAAATGCATGGAGGATTACTCGACAAACGC
ATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTTGGGTATCCACGTC
GACTGCTCACTGATGAGGGCAGCCAACTCGTCAAGGCTTGCGAAACActt
caaattgattttcaagACATCCAACGTCGTCTCTTCAAAGAATCCAATGT
CGATTTCAACACTTGTCCAGTTGGAGGCCACAATATGAATGGTCTCGTAG
AACGAAAAATTCGTGAAGTCAAGAAGTCCATCCAAAAATCAGTCTCCAAT
CAACGACTATCAATCATGCAATGGGAGACATTCGCATCTCGAGCAGCAAA
CAGCATCAATGATCTACCATTAGGCATTCGTGACTACGATGGAGACTTGC
AATCATTGGATATCATCACACCAAATAGACTGAGACTTGGACGAAACAAC
GACAGAAGCCCAACCGGTGAATTCAGATTGTCAGGAAATTCATCAAAGAT
CATTCTACAAAATCAAGCAATTTTCGATTCTTGGTTCGAGCTATGGTTAA
CCTCACACGTCCCAGGACTTATCGCCAAGCCAAAGTGGTTCAAATCAGAC
ACCAGCTTAAAGAAAGGTGACGTTGTTCTATTTACCAAGCAAGATTCACC
GATACGTTCAAATTACCAGTTTGGAATGGTCGAATCCGTTGAAATCGATC
GAGACGAGAAAGTTCGAAAAGTTAAGGTTCGTTATCAAAATGCTTCAGAG
AATACTCATCGTTTTACATTTCGTTCGGTTCGAAATCTTGTGGTGATTCA
TCGTGTGGATGAAACCTCTATGATGTTGTACCTTTATAATGCTAACCAAT
TTGCCACCTGTGGTGGGGCAGTGTAGGGTGAACTGCACcctaattCaatt
AgatttaattactttaacaaaacattcaaaatacaaaaagaactTAACGT
AGgacaattatatttttattgcaTCGCAAATGACTTGTACATATTCCCTA
GGCAATTATCGTAGGCAATTATCGCTagattatatcaattttttacaatt
tcaatTCAACTCAATCATTCAATTCTGAAACTTACACAAGAAGGATGTAT
GTGGAAGATGTTGAGATGCGTTTTTAGATACAAGTTTTAGAGTTCAATAT
TTCAAGTTCAATCTTTGTCAATCATTTCATGTACCTGTATTCACTTGCCT
TCAAATTGGCATGTGGCTATCCGGTACgtttgcctctttgtttgcctttg
ttgtctttctttgtttgctttgtgcctccttttCATGCACATTTAGGTTG
GGTCCGGTTTAGGTCTGGACATTAGGCTAGGTCATTTTTAGGCATGTTTT
TTGTTAGTCAAATTTAAGTTCATTTATTGCATTcaattattgtcaataat
caatttctctagtttattttctaattgtaatttttcaatcaatttttcag
tttgaacataatcAACCAGTTCCAAACGGAAGCTGATTCCAATCTTTGCT
CAAATTCCCCAACAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCGCTATTCGATCTCAAGAAGAGTTTCATCTTAGACATCA
ATGATGAGCTTGCAGCCAGAGACATCGAAAAGAGTCGCGATTTCAATCGT
TCTCGACTAAACATCAAAATCGAAAAGTTCTCCGGATACGACAGTAAGAT
CGATTTCTTTACCTTCCGTACGAACTTTGAAAAGCTCCATCTGAAGACAA
CACCAAAGCAATTCTTACCTGCGCTGTTAAAGAACAACTTCCTCACAGAC
CACGCCCTTAACTTAGTTCGCAATCTTGATGACATCGACATCATATGGGA
GAGATTAAAAGGTGTCTATGGTAACCCAAAGATGATGCTATCCAAGAGGC
TTCTTCAACTTCAAACATTGGACGTCAGCAAATCAACGAAACCTGAAAAA
GCTATCGACAGTCTTACCAAAGTCATCAACGTGCTTCAAGATTTGATGAG
ATTAGCACAAGAACACAACATTGAAGAGTACCTATACTATGGTGAAGGAC
TCAACACCATCTACCAGCTGATCGGTGATGTACAAACAACGAAATTCCTA
GACACCATCTGTACCGACGACCTCGAGCAACAAGAAATCTGGTCAAAACT
CATATCCTTCCTGGACCATCAGAAGAGGATTCATCAACAAAGACTTATGA
TCCAAGGACCAACACCAGATCCACCCAAGAGAGATCCTCCAAAGAAAGAC
TCACCACCATTCAGACGAGGTCCATCATCACACCACACTGATGGTCAACA
GAATCGTCGTCCACCTgatcaactcaactgcttcatATGTCAAGCCACAA
ATCATGTTGCAACCAATGGACCACAAGGAAGCAAGATCGTCCAATACTTC
GCATGTCCAGTATTCGTCAACATGACTCCTATCGAACGTTTCAATGCACT
CAAATCCAAAGGACTCTGTTTCCAGTGCTTGTATCCTGGAGCCAAGTACG
ACCAAGGGAAACATAAGGAGGGACGTTGCCAAAAGATCTTCTGCTGCAAA
GATACTCTCCATGACAAGTTTACTCACAAGAAACACGTGCTGGTTTGTGA
CGAACATAAATTTACCCAGGAGAACAAAGATCTGTTTGACTTCTACAAAT
CAAGATGCATCAGCAAGATCCAACAGTTAGAAGCCTTCACCAAAGACATG
CGTCTCACCTATCACTTCACCCCAGACGAACCAGAGCCCAATGATCATCA
AGCCATCTACGTGTTGCAAACGATTGAAGTTGACCAACAGCAATTCACTT
TGTTCTACGACAATGGATGCAAGAATTCTGTCATCAAGTTTGATGCAACC
AAACGACTGGGTAGCAATCGAGCCAAACAGATCATCTCAAGACCAATTCC
AGTTGGTGGCGTTGGAGGTGTCACAACACAATCAACACATGGAATCTATA
CCTTCTCGTTACCACTGGCAACCAACAATGGTGCAGAGATGACTGGAGTT
TGTCTCGACACACTCACTGCGACCTTTCCCTTCTATCCATTGCAAGGAAA
AGTGGAGAACGACATTCAGCACAGTTGGGAGGACTCTGGCCACGACATCA
ATCATCTTCCAAGACTGCCACCAATGGTTGGAGGAGACGTCGACGTGATG
ATAGGTATACGTTATCTTCGTTTCTTTCCTAAATTCATCCACCAGTTACC
TTCTGGCTTGACCATCTACCAATCACAATTCAAGAACATCGATGGATCTT
ATGGGGTGATCGGTGGTCCCCATGAGGTATTCACAAGTATCGAAAATCAT
CATCACTCAACTTCGTCACAGTTTGTAGCAAGTCAACTGGAAGCAGCAAA
GTTCGGGTTCTACATTGATCCAGACATTCGATTACTTGGATCAGCTACCT
TCAGTGAGGTTCGACATGACTTGTATTTCACTAACAACCCAACTTACCAA
ATCAACAACGACGAATCTGAACCATCAACTTCATACATCACCAATCTTAA
TGAGAAGTTCGAATCAGTTGGTACAGACCTTAACTATCGCTGTGTCAATT
GTCGAAAGTGTTTAACCTGTAAGAACCATTCTACAGAAGATTCCATTAGC
ATCCAAGAGGAGGTCGAGCAAGACTTGATTAATCGCTCCATCACTATCGA
CCCATCCAATTGTTCATCGATTGCTAATCTTCCACTAATACACGACCCTC
TGGTCAAACTGGCACCAAATCGAGACATTGCACTTCGCGTTTACATACAA
CAGCTTAAACGTTTGGAAAAGCATCAAGACGATAAGGACGACATCCTCAT
CTCAGAGAAGAAACTGCAACACCTGGGATTCGTCGAATATGTCAAGAATT
TGCCCACTGACATCCAAAAGCAACTATCAGAATCTCAGATCAAGAATTTC
ATACCATGGAGGGCTGTATGGAAAGGCTCTTCTATATCGACACCGTGCAG
AATTGTCTTTGACGCTTCCATGCCGACATCGACTGGATTTTCACTCAATG
ACGTTCTAGCAAAAGGAAGGAACTCAATGAACAAGCTACTCGAAATTTTT
CTGAGGTGGAGAGGACATCGCATCGCATTTCATACTGACGTACAAAAGAT
GTACAATTCCGTTAAGCTTAGAGAATCAGACTGGTGCCTTCAACGTTACC
TATGGCAAGAACACCTTGATCCAAGTCAACCACCAGAGGAGAAGGTCATC
ATGACACTGATATATGGTGTCAAATCATCCGGAAATCAAGCCGAAACAGC
ACTTCGAGAAACCGTCAAAATACATCGCAAAGACGAACCAGAGGTCGCTA
GAGTCATCACTGAGGACGTTTACGTCGATGATTGCCTGTCTGGGGGTGAT
CAAATCAGTACCATCAAACTTCTATGTCAATCAATCGATCAAATTCTATC
GTATGGTGGATTCACATTGAAAGGATTCACAATATCTGGAGAAGAACCGA
AAGACTCTCTAACAGCCGATGGCACCACAATCTCAGTCGCTGGAATGAAG
TGGCATCCAAAGAATGACCTCATATCCTTCGACATCAACCTTGACTTCGC
CAAGAAATATCGCGGTAAGAAACTTGGTGAATGCAAAGAAGTACCAAAAC
GACTCACCAGAAGAATCTGTTCATCAAAGGCTGCCGAGATTTTCGACATG
ACAGGACTGCTTACTCCTATCACAGCGACGTTCAAGCTGGACATTCACGA
TCTCGTTCAACGCAAATTAGCATGGGATGACGAGTTACCAGCCAACCTTC
GTGACATATGGATCAATCATTTCGACCTCATGGAGGAGATCAAGACGATC
ACATATCAACGAGCCATTGTTCCACAAGATGCAACATCACTGAAGATCGA
CACCCTCGACTTTGCTGATGCCAGTCCATCAATGATCTGTTCAGCAATCT
ACGTTCGATTCCCAGTACCAGATGGCTATTCTTGTCAACTCATCTTTGCT
CGATCAAAGTTACTAAACGATACAACACAACCAAGAGGAGAGCTGGC

Coding sequence (CDS) from alignment at sc0000660_pilon:36699..43945+

>XLOC_018103 ID=XLOC_018103|Name=XLOC_018103|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000660_pilon:36699..43945+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAAAGGCTGCCGAGATTTTCGACATGACAGGACTGCTTACTCCTATCAC
AGCGACGTTCAAGCTGGACATTCACGATCTCGTTCAACGCAAATTAGCAT
GGGATGACGAGTTACCAGCCAACCTTCGTGACATATGGATCAATCATTTC
GACCTCATGGAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCC
ACAAGATGCAACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCA
GTCCATCAATGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGAT
GGCTATTCTTGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATAC
AACACAACCAAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAG
AGGTTGTTCGTCAAAGGCTGCCGAGATTTTCGACATGACAGGACTGCTTA
CTCCTATCACAGCGACGTTCAAGCTGGACATTCACGATCTCGTTCAACGC
AAATTAGCATGGGATGACGAGTTACCAGCCAACCTTCGTGACATATGGAT
CAATCATTTCGACCTCATGGAGGAGATCAAGACGATCACATATCAACGAG
CCATTGTTCCACAAGATGCAACATCACTGAAGATCGACACCCTCGACTTT
GCTGATGCCAGTCCATCAATGATCTGTTCAGCAATCTACGTTCGATTCCC
AGTACCAGATGGCTATTCTTGTCAACTCATCTTTGCTCGATCAAAGTTAC
TAAACGATACAACACAACCAAGAGGAGAGCTGGCAGCTGCAGTTCTCAAT
GCCCACACAGAGGTTGTTCGATGGCTATTCTTGTCAACTCATCTTTGCTC
GATCAAAGTTACTAAACGATACAACACAACCAAGAGGAGAGCTGGCATGG
CTATTCTTGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATACAA
CACAACCAAGAGGAGAGCTGGC

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_018103	XLOC_018103-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000660_pilon	genome	sc0000660_pilon:36699..43945 +

Properties


Property Name	Value
Aaloc	427-501:7173
Aaloc	16-423:1

You are here

XLOC_018103 (mRNA) -