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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000257_pilon:140010..145884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_017783 ID=XLOC_017783|Name=XLOC_017783|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5875bp|location=Sequence derived from alignment at sc0000257_pilon:140010..145884+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGTCTCATTATAGCTCAGTCAAACTAACAGAAAATAGAGTCAAAAAGTT
GTTGACGGTACCCTCGAAATGGGTTATGGGTAAAAATCTATACTATCCAA
AAGACAAATTCAGCGAATTAAAACTATCGAGACAACTCGCTGATCCCCAG
GCAGACTGGAAAGAGATTCCAATCGAACAAGAACTCATAAGATTTCGTAA
GtaaccttttagtttcttccaGTTTTTTCCCTTTTGGATATTTAAGAAAT
TTAAGTCAACAACCACTGGGTTAGCCGGGAGACATATCAGATACGCATAA
CCACCATTATGACAGGATCATCTATTAAGCTCAAAATATTAACTGTATAG
AAAAGAGTGGACTTAAGTGACTATCTCGACCGCGGTccaaagatgatgat
gatgatgatgatgatgatgatgatgatgaagtgACTTTTTATTCCGTTCG
AAACCTTTTGAAAGCTTTGAAGTTTTCTATTcgtaaatgaaacaaaaaac
aaaaaatatttcaaaaaatgagcaaagacgttatttcaatttttgttgaa
tattttagGTACAATGGAAGAATGTCATGCTGTAAAAAGCGGAACAGAAT
ATGATGACACGGATCAGGAAATCGGCAATTCACTGTCTCATCAAAAAGTT
ACTGTTAAGCGAAAGTaagaattttttgcatattCTTGATTCTCTGAACT
GAACTAAAACAAGAGTCGTAAAGGAAAGTGAATGGGAAAAGTCATATCTA
AATCACTTTTCATGGATTGAAGCTAGCTATTTGTACACTGCTACGCGCAT
AAGAAAAACAGGGTCATTCTTTTCAATATTGGAGTGTGTTTTATTTCAAA
GGTCATgtcaagaagaaaacaaaacacaaacatCCTTGCCTGGTGGAATG
ACTCCTGATTCAAATAGGTACacacttttttaaataagaattaTCTTCTG
CAAGAACATCAgggcaaatatttttttattattatatgcCATGCGGAGCA
GCACCAGTATACTCTGCTGCACATGGCAACGCAAATTTTGCCATAATATG
TGCTTGTGATTAGGACAGTTTTTGGAAGAATTGCAGAGTTATTTTTAGGA
GGTGACCCTAGAAGATAGACTTGTAATTAGTAGAGTTGTAGATAGGAGAT
TTATATACAGGAAAAATCAGAGTGTGGAGattggtaagagaaacagaggt
gGTAGGTTGTGGCAGAAAAGTTATGTAACAAATCAGAGTGTTGAGATTGG
TATGAGGAACAGAGGTGATGAGTTGTGGCAGAAGAGTTATGTGACAAAAC
AGAGTGTGGAGATTGGTATGAGAAACAGAGGTGGTAGGTTGTGGCAGAAA
AGTTATTTAACAAATCAGAGTGTTGAGATTGGTATGAGGAACAGAGGTGG
TGGGTTATGGCAGAAGAGTTATGTAACAAATCAGGGTGTTGAGATTAGAA
AGAGAAACAGGGGTGGCGAGTTGTGGCAGAAAAGTTATGCAACAAATTGG
TATGAGAAACAGAGGTAGTGGTTATTTTTTCAACGAGTCGAGAAGTGTGA
CAATGGAAGAAGAGAGCTTTTGCTATAGATGGCTGCTTGAAGGAACGACT
AGTGACAACTCCATGCCTTGGCATCTAGATATAGGAAAAGCCCTAGGCCA
CATTAGCTCAGAGCTAGAACTAGCttttttttttGGCGCCTACAAGCCAC
CCAATATTTGCCTAAACGATAAGATTACTCTAAGAGTACCATCCAGGGTG
GATTATACAGAATTTTATTATAATATAGTTGTTTTCTATTTGGTAACAAA
GATGACTTGGTTTTTTGTTCgacttgaattgaaattttactATACAAATA
TTATCTTAGCTGCAAATGTGGACTTGATAGTTAACTCTCAAAAAGgtcat
ttcttttgtttgtatAAAGGTCAAGAAAACGTTAAATATTTATCAACCTG
aattttagtaatttcttaggaatacttgaccctcagtcCaaaaaaaGTGT
CTTAGCTTTTAATTCAGAAACCTACTATGACTGTCTATTGccccccTGAA
TACTTTTTTATGGAAGGTTGATAATTCGCCGGCTTtttctattattattt
ttatcattttcagacGAGAGATTGTATCCAGCAGcagcgaaaaaaaacaa
aggctTACTTCGAAAAGGTTTGTATTCTCCCTTTATAACTTCTCAGATAG
CTTACTAAATTTTAAGTCTTGTCATCGTATTTTGGATAAGAATGACACAT
GTTTTATAACAGTCGATAAGAGTAACCATTGCATTCACATAATTCCAACA
GTGTGAACCTCCGACTTATCAgacttaaaaaaactttatagGGACGGTAA
CAGAATTAGGGCTTAAAGAGTTTGATAAAATGGAAAAGGGATTACAATGT
ATTAGTTATAAATtgtacccctgtctcaatgccccttgtggaaaattttt
ctcagtggggataaatatTTCCATTGTTATAGTAGAGGCCATTATGTAGT
GAAATAGCTTCCCGTGTGAAGCAACTTGTAGAAGATCAAATTTGAGAGGT
GAGACCGGGTGTAACCACCTGTtaccatggaaactgacgtcattggttac
tatggcgaccaaaataaaaagtcgtccaaaatttccatggtgatcaaACC
CGGTCTCACATCTCAAATTTGATCTTCCACATTCAAGGAAGAATAATCAA
TCATAATATCCCTTTATACAaactgctgcacacgggaagataTAGTGTCC
TCTTTTGTATCCCATTGGGAtagaaaaaactatttttgcggaacgaccgt
tttgagggcgcgaagcgcccgaatagggagtgtagcatcctttggcaaga
tctgcgtacgcggggcgtaaatttgtatatgttcgaaAAAGTGTTTCCAA
AACTGCTACCTCCGACGATAAATGTCGACTTTGCTCTGTATTGAAAAATG
GCACCTGTTTAGCCACcgaaaagaagcatttaccTCGTAAAtcttattga
aaattaattctACTAAAACTTTGGttctgtttttgtcattttttttaaaa
atcatacatattttaaaaaaaagtaaaagtgtatctaaaattatatcgag
tttgaatatccaatcaagtgcgagatgtctgtttttgtgtcgttgctgct
actttcacttttgcacacttaagaaacataaacaaagatggcgatttttg
tcaaggcagaatcctgctgattttttaagctaCTGGATGCATCCtttgct
tgtaaaatgacgttgctgctgttcacacttaatggaaattttactcgagt
atcaTTCTAGGtttttttACCCTACCCTCCACTTGCTGATGTGGTGGCTG
TCAACTGCTGaatgaaattttcgataaatggtCACAATGGTCTGATGGTT
GTTTACCTTGTGACATTCAAACTTCATGGTACATTTTTTGTGATAATTTG
ATTGGAGTAACCGTTCCTATTACATCAATTGATCTCagcaaaaaactatt
tttatgacttgatcaaaccaaatcaaacagcagtcaagtcagatttaaaa
caacatttggatttcgaaatattttaacgttatatagactttataatttt
attggaaatgtcaTCGTTAAATTTTACATTCAGCGGGCAttgtcagtcag
gcacatcctggcaaatgaacggggtatttttcacttgcgaccattgcatt
ggcaaatgaacggggtcgaaaaggaaagtgacgtaatagcgccaaatacc
cagtttaattgaaccgggttggaaatattttgcttcatttcaaagaactg
catagatgaaattttttttccatgggtcaattttgtcttcgaagattgaa
gaaacttttaatgaaaaaataaagttcccagttttcttccttttttccct
ttttcagtttgaagttcatttttattcattttcacgcttttagcctgaga
cttcctatctcatttacactgggtgacgaataccccatgcaaatgctccc
cccgttcatttgccaggatgtgcctgactgattgttgccaaacaatgatt
ttttGTCACGTTGCCGTTGTTTAACAATTTGAGGAACGCTTTTACAAAGA
ACATTGAATATTGGGTGATTCAGGTCAGTAATATTCGTTGAGGCGTGGAG
GTACGATGTGAAGAACAGACACAATATTTTcaggagtttttaattattct
acATAAAATTATAAGGACTTTGTTGTGGTTTGAGATCAAGCACATTACAC
GATTCCCATCATCCAGATTCGATAAAATACAATTCGATACCTTGAAAACT
GCTCTggccgaaacatgttggaaatttgtAGCAtataattgtattttttt
ctcgatccTCGTCCAATATATACAATTTCGATATACAATAATGTACGTAT
AATGCAACACAAGAAAGGGGTAAATTGTGAATGTTTGAATGCAATGATTG
CTGCCTTACTACAATCTAATAATGTTTCAAGAGGTTTATATACAAAAGAT
GGGTAAAAGTCATTGCAAGATTTGTTTTTTCGATTGCATGAATTGGatga
atgtatgaaaactagAAAATGTACTGAATTACAGTATAAACTAttgatac
cgtcaactgctctgacttgggacgattggtcgaaacatgggactggttga
tatctggtctgtattttcacttactgttaaatctctttgacaacaaattt
gtttttgtgtattttttaatacgccgttcattaagtcaaatcaaaacaaa
tcaaatgactttggaggttcggtgaaatggtggccgaattgccgtcccat
gttttgtcagatagtcccaagttagagcagttgacggtattttggtgaaa
ATGGAATCCACTTTTTACTGTTAGTTAGGATATCCTACTTATCAATAGCT
CTATTTTCTTGATCACGATTTCACCTTGAATATTCAAAAACTACAAcagc
aaaacaatcaaaagaaagACTACATGATGCtttttttAAGacacatcaaa
ttatttttagttcaaaAGCCTTGTATAAAATGCTCTCAATATGAGCTATG
ATGCTAatttttagagttaattagtttttatttttgatattattttttgt
tattttactgTAAGTGTACCCTGAGGAAAGTTGTATTGAGcagatatttt
tgtaattttgatcagcaagattttttaaagctctTATAAAAGTATCACAA
AATCGagtacaaatgacttttcaaataCCCCCAGGTGCTTTTGGAACACC
TCTGTCTTCatacatttaaaatttttcaaacattctcaCTGGCAATAAAT
TCAACGTGAATTGTAatattagtttttcttttttttgtaattctgcAGTA
ATTAATATTAgtacattttgagatttcttcgctttgcgaaaacagaacgc
tcgttccgcaaccccttttatgttgatttatttattttttatttatgtct
CTTTAATCACCAAAAATCTCGGTATATCTACTAAAAATATGtacaagtaa
aaataaaatgttacaacttttcttttttttaaataaaatcaaatctaCTA
ACTATATCATTTTTGTAAAGTCGAAAACCCTATCCTATCCctaataaaaa
aacctttaaggtCGTGATTGTTTTCGAGTGCATTTCTTCCATTTGATTTC
CAACAGGAATAACTAAAGAGAGGTTAAGGCCCCTTATCAAACTACGATCC
AAATGTCAAACTGACCTTGAGAACTGATTTTCACCTATTTGGGTGACATT
ACCAGACCAATGCTCATAACTTGAATTTCGaaatataaatcgaaatttta
catttttggaagtgatttcaatcaaaaacttgatttcttAGGCTTGCTGA
TATAACATCTCCAGTATTAAATGGT Coding sequence (CDS) from alignment at sc0000257_pilon:140010..145884+ >XLOC_017783 ID=XLOC_017783|Name=XLOC_017783|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000257_pilon:140010..145884+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGTCTCATTATAGCTCAGTCAAACTAACAGAAAATAGAGTCAAAAAGTT
GTTGACGGTACCCTCGAAATGGGTTATGGGTAAAAATCTATACTATCCAA
AAGACAAATTCAGCGAATTAAAACTATCGAGACAACTCGCTGATCCCCAG
GCAGACTGGAAAGAGATTCCAATCGAACAAGAACTCATAAGATTTCaTGT
CTCATTATAGCTCAGTCAAACTAACAGAAAATAGAGTCAAAAAGTTGTTG
ACGGTACCCTCGAAATGGGTTATGGGTAAAAATCTATACTATCCAAAAGA
CAAATTCAGCGAATTAAAACTATCGAGACAACTCGCTGATCCCCAGGCAG
ACTGGAAAGAGATTCCAATCGAACAAGAACTCATAAGATTTCGTACAATG
GAAGAATGTCATGCTGTAAAAAGCGGAACAGAATATGATGACACGGATCA
GGAAATCGGCAATTCACTGTCTCATCAAAAAGTTACTGTTAAGCGAAAGT
ACAATGGAAGAATGTCATGCTGTAAAAAGCGGAACAGAATATGATGACAC
GGATCAGGAAATCGGCAATTCACTGTCTCATCAAAAAGTTACTGTTAAGC
GAAAGTCATgtcaagaagaaaacaaaacacaaacatCCTTGCCTGGTGGA
ATGACTCCTGATTCAAATAGGTCATgtcaagaagaaaacaaaacacaaac
atCCTTGCCTGGTGGAATGACTCCTGATTCAAATAGacGAGAGATTGTAT
CCAGCAGcagcgaaaaaaaacaaaggctTACTTCGAAAAGacGAGAGATT
GTATCCAGCAGcagcgaaaaaaaacaaaggctTACTTCGAAAAGGCTTGC
TGATATAACATCTCCAGTATTAAATGGTGCTTGCTGATATAACATCTCCA
GTATTAAATGGT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257_pilon | genome | sc0000257_pilon:140010..145884 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 412-444:5843 |
| Aaloc | 358-408:2115 |
| Aaloc | 292-354:853 |
| Aaloc | 241-288:615 |
| Aaloc | 199-240:561 |
| Aaloc | 1-195:1 |
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