XLOC_016632 (mRNA) -

Overview
NameXLOC_016632
Unique NameXLOC_016632
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000063_pilon:1504539..1512361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016632 ID=XLOC_016632|Name=XLOC_016632|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7823bp|location=Sequence derived from alignment at sc0000063_pilon:1504539..1512361+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCGGGCGTTCCTTCTTGTCTCTCAATCCACGGTAACGGTGCTCACGT CGAAGAGCATGATGATATCATCGGTCGAAGCGTCAGgtattcagtttttt ttgttttaaatcaactacaaatatacagttgacactctctaattcgacct tcccttattcgataagctcccttattcaatgaaactccaattccccttga agatcgaattagagagcgttaacTGTACTTTATTCAATCAAAGACTCAAT GTCTGGAAAAGAAGAAACAAACCTTTTCTTTTAGCCAGTTATGGTGGTAT TTTAAGAGCGTAAATCATTTACAACCATGTCTAACCCAAAAAACGTTAAT TTGTTGATTCAGAGAGATTGCATACGAGAGAGTTGGAGGACGTCGTATCA TAACCAGAGCTGATCCACAACGAAGTGGAATCACTTACACTTACAATGGT ACTATCGATAAACATCGTCCTGAAGGGATATATCCAACCTGTTACCGTAT CGTCACTGCGTAAGGCTCTTTTTACTCTTGTGATACTTTTCTGTCTCGCT TAAAAGGAAGAAAGAAATCCCAGTTAGGGCAATAAGCTAACGAAGAAAAT TCCAGGTTTTCTAATTCAACGTTTCCCCTCGTTTATATGACGTATTTCCT CCGAAAAACGCCGCCAGGATCTTAGGTAAAATGTTCGTTAGAGGTCTGCG TTCATAAAGGATTGCTATATTTAAATGGTGGCCGTTTGGGAGTTTTAAAC GACACCACAAATATTGCAAACAAACATTCGAATaggcttttccaaaaaag attttacccccactgttgaggctattgatttttcgaagtgtttagccccc tggatatcctctcttataaagatgcttacccctggatatcgtatttttta cttgaaaagacaactttaccccctggatatccgcccccttgtagatattt aaccccctggatatccacttttgaacaaaaattgttaacCCCCTTGGATA TCTGATATCTTCaacacggactatttctggaaaagcccaatatagATAAG ACCTGATCAATTCGCAATGATTATGCTTGTATACACAAACTGAGAAGAGT CCCTTTCTTCTTTATAGAGATCCCGAAAACAACTACATATATTCCAAACA AGTTTGCACACAAGTCTCAACTCTTAAAGGTAGGTTTCCATTGACAGTTT GAAAGGTAAGGTTTAGTTTATAGTAGCAACGGCATACTTTAAGACGACtt tttttCCACTGGGACGTCTACTTATGTTGCACttatattacacgtttttt tttgaaGTAATTTTCATATAAGCGTTCAAGGCCTATTTTTCTCGTCCAAA GGTAACAAAAATTTCGAATTGTTGCCCATTGTAGTGAATTAGTTTTGAAA TGTTTCCTTATCATATTTTCGGCAGATGGTTTTGCTTTGAAGACAGAATA CAACTACCCAAAACACGGGGGTAAAGCAATGGTTGATGACGTCAAAACTT TGAATGTAGTCGTGCATGGAGCTGTAAGTTGTTGGTTCATTCAACGAATA ACTAATTTAGAAAATTGCAACTCTTTATTAAACATGACAACCTGGTTAAA TTGATCGAAATTAAAAAGAACTTAAACAAATTTATTCAAGAAGAAAGGCA GATATTTTTCACGAGGAATCTCCTCACTAGATCCCATACTATCAGCTGCA GAAAACCTGTCGTTATTccgaatacaccttttcaaccgtagccgccAGTT GCCGTGCGGGTATTTTTTGTTTcgccaccctaaactcgatccaatccttt ttttgacacatttttctattgtctatagatgcaaaaaaggactgggatgg ttttagggtggtaaaacggagcAAATAGTGTCGAAaaggttgaaaaggtg tattatctTCCCATACTAATGAACTTCCACATTGGGAAATAAATTCATTG GCTAACAACACCACGGTTTTCAAATCATCGAGCTCAAATCCGGAAGGGCT AAAAGTGAAATCTCTTTCGTGGAAAATAAAGCCACATAAAATTCATTGTC ATAGTCTGTGTCAGATTCGTAGCAACCGTAGTGGTAGAAGGTTGTGggtt cataccaaagatttccaaatggtacttggtgcctctctgcttgatgctca tgCAGCAATTAAGACAAgagtcaagggtaagtggagcaatccagggagaa agagtggcgccctcccctaccttcaagtagataactatcaaaagaggagc ctccgggccgcctccgactgcggtcgcagactatGTCACATTTAAAATAT ATGTAaggtgaaaacaaacaaaaggcTAGATCCAATCCGTCATTCTGAAT ACGGTGCAAATTTTAAGGTGGTAATATATCTTGCGATTATTGTCTTTCTT TCAGATGAAGGAACCAACAACGTTCAGTGTCGCCATCTTGGAATATGAAA CAGACAGATCAGTTTATTCTTTCGATTACAACGAACGTAACATAAAAGAA CATTACAAAACGGAAAACGATCCTATAAAATTGTTCATCACAAATATCAC CATCACTCTCCCCTACATGACGTCATTGGTGGCTAATCGAAAGTATTACG TCATCTTTAACAAGTATCCCTACGCACTACCAGGGTGTAAAGATCACCAA CGAGATTCACCAATGAACAAAGATGAATGGACATTCACTACTGAAAGTAA GaccttttcacttttctttctGATATCTTACtaattcataatatgcacca ttacaatgtcttccacagacacaacagctgattggttgaaagtgacgtat tgactgattttacgtcacttacaaccaatcagctattgggtccatgatat aatgtcagaagacattgcatccATATCATGAATAACTAGAAGCAGATTTG GTGCCAGATGTGGAGCtttttttttCCTACATACACCACCAGATCCGAAG GTGAGGAAAGTGTTAATATTTTGAAGGTGTGAATAATGGAATTCAGCCAG GACACCATTAGAATTTTTGAGGATGCCTACCTATGAAgcaaaaaagaagt aaatttcaaattttcaaatgaacaTATAAAGAACATTGATAAACCAatca attcttgatatgcgtaagtcaagatgacgtcatattttcaaCGGAAACGC CCaaaaaaaagccggattttgacctccgtgtttctatttttagtagcAGA GAGGGGTCACATCCCGGatttttttgggtgtttccgcttgaaaaatgact tacgcatatcaagaattcaaAACACgtgagatgtttttttttctttcagc gGTGTCGAACAACCCACCCATGCCCATCGATGGCGGAGAGATAAAGCATG AAACAGAGTTGATGTGTAAACACGATTCTTTTAGCTTCACTTTCAAACAA CTTCACAATTCCACGTATGTTGTCTcgttcagttttttttttcaatttga tacaacacccctgtgtcacagacccgctgggaccccagcaccattggaaa atttggcaaaaaattcgTCACCATTGGGAGAACACCCTGAAATTCCACCC CCACTGagaaatttactttgatttcatccctatccgaaattcaatgttta aaaatgacACTCCAAAACTATTCCCACTGGAATTTGTGaccttagaacaa tagaatttctatccccattggaatttcaataggaatttttatcttcAGTG AGGTAAAATTTCCACCGGGGCTAGGAGACAGGGGTGTGCTATAATTTTGA ACTGTAACTTTTGATGTGTTTATACCGTTTTTTGACGTTTACACAAGGCT CACAAAGTTCATGTAACGCTCGATGAACGCTGAAACACAGCTTGTTTGTG GCAGCTGGATTCTCTCTCTTATGAagaagacacccccttctcacagacgc TGTTGgatcccttcccactggaaaaatgcccaaaaaatcgtccccagtgg aaaattatactgcGAATATTGGCTctatttaaaatattcaaataaactaa tcctcactgcaaaatattatatgCTATGTTTTGTATCCCCACTGAACTTg gtgacttgaaaacaatggaatctAAATATCCACATCGAGTTTCGGTCCGt tattttacccccactggctgagaAAATCCTACCGTTTCTGTAAGAATGGG GTGTAAGAAGTGCCACTAAGAGTGGTTTCGTTACCCCAGTGCAACTTGTG AGCGCTgttagaatcataaaaaaaaacaaacgagGGGTCTGTGTATGAGT TTTGTTACTGGTATTCTGGGTGGCAAGTTACTGGGAGTAGAGAGTTGTGT GACGCTCCATCTCAGCATTTGATGTAAAATGTCTAGCGCAAAtggaaaag gggatagactccctcactctcTCACTCTatgctccgccgacagccaccag atgaatatagttatttactttactttttatcaatttacaGAATGCCAATC AAAAAAGTGACTTTGTTGAAGGATGATTGCGAGATGAGATACGATCGAAT GAGCAACATATACGACGCCTTGAACATCATGTTCACGAAGTGCGGCACAC AAATGAGTGAAGACGAACATCACATTGTCTTCAGCAATATCGCACGTGTC TATTACACTAATAGAACGACCTCCAATTCACTCATCACCCGAACCAAAAC CATGAATATCAAGTAAGCTTTTTTATGACATCGCCTGTGCGCCTGAGATT AGATTGttattgttttctgcacaccacgcggATCTCTAAAGAGATGTATG AAAACCACTGACCTTTGTATATCCCTTGACCAAGTCACTCAATGCTGGCC aaacaaaatattatgatcagagtttttttgaaattggtacccacGGTGAG AGCGCTAGATTAGTTTCGTTTGTACACTAATGATGTAGCACCGTTTGTCT Ttaaggcaaagtttcaaaccctacaatagcttctttgcgggtaccaactt TTAAAagaacttcgatcaaagatggcggatatagcttggtccagggatat ataaaactcagtaatgaaaataaaccaTTTCTCAGGAGTAGGAATGAACA CGGAGTTGCGTAACGACAATTGAAATAGAGCGATGTATATTGGAAACAAG ATAAAGTTTTAACATCCCGCTTGAAACAAGATTTTTGTAATAGAAGTCAC TATTATACTCAGATAGTtcattttcaagcgcctttataggtttaccgtgc acgtaagaaagtTGTTGCAATCTGTTATCAGAATACCATTTTCTAGATCC TATCGGACTTCTTTTACTTCAGTCGGCAGGGATTTTAAGCTTAAATATAT TCAATTGATTCGGGAACAGGCttatatatttcaatttttttaaaaattta aaaacacacTACTGCCAGTTTCACATTTAATGCGAACATCAGGTATAAAA ATTCTCTGTACAATATGGTATAAATACTTATTCTACAGGGTGtccagaaa aaaagtaaatgaagacttttacgaagaaaagtttttgaactttgaagagc ttattctttctttcatttatGTAGACTTGAGTGTCGTTTACCAAAGACAC AAATCAACACGTTAAGAGGAAAACCAACCAGGAATGCAACGGACGGAGGA GACGGTTCTGGACCTGAGGGAATCGTTGTTGGTCCACAGTTTATCGAAAT TCACGACACTGCACGTATGTCCATCTCCTTCTTTCTATGAagtgttttat aagaaaattcatcccagctggcacacaacgttgtatcatctaacgttata tggacgttgtgaacgcatctaacgttatatggacgttatatggacgttag ataaacgttgaaacaacgttgtgtgccagctgggtaaagCTTAGAACCTA TTACTGCACCTCCGTGTAGTCTCCTTCCTGTTGTTTTCTCCCTTTGAGTC TTTCCTCGTGTGAGTCTCTCACAtcaaaagtctttgaaaaagTTGTCCAA TTTCTCACCGGACAGAATCAACTTCCAAACAGGATAACTTACGAACTTGA ATTTGAAAGCcataaaaagagaaatatttcaTTCTGACTGGCAAAAACTT CCACCAGATCATTGAGACAGGGTGGTATTCTTAGGTGTCCAATGAATACC CCAACTGCTtataaattttcgattttcggggATATTTATATCTGACAAGT AAATACTCCTCGCTTATTAAGCACGTGAGAGTAAGTTTgtaaaacgataa aaatattttgtacaattattaTTAGGATCAAACGCTTCATTCCGCATCGA TTTCCAAGTTTACAAATCACTCCAATACGGTCACTCATACGGCAGAGAAG AGTTTCCAATCTATTTGGCTGTCAGTAACAGAATCTACTTCGAAGTTAGC ATcgataaaaaagatttaagcATCTTACCAAGAACCTGTTATGCTACCAA AACACAGAGTTACCAAGATGAACAGAGATATCATTTGATCCAAGATAGGT AGATACCCTGATTTGAACCTCTACATTATGATAACTGGCATCTCATGAAA GAGGATGCCTGAGTCTGTATTGAGTGGTCTAAGAATTGTCTCCTTTTTAA TCGTCTAAACTGTAGTTTATAGTACCTACAAGCTTGtttttttGATCAAG TGCGTTAATCCGACGTGAACCACTAGGGAACAAGGCTAGCGCATTTCCAC CACGATGTAGTGTGAAATCAATGACTAGCACAGTAACTGATAATACTTGA GTTTCTGTCCACCCAATTCCTAATACACACAAGATGGATAGGCGAACTTG TTTGTTTCTCGATATTGGGAGTAGTCTAAAGCTTTGGCTGATAGGAAAAC ACTTCAGTTTGAATTTAGTTCTTACAGTCCGAGTCAAAGCTGACTCTTTT AGTTTAGCTAACCGttgcataaaaatattttctttcctcTCGACCACAGT TGTCCTAAAGACCAGACGTACGTCATGCACAATGACAACATCGCTAAAAA CAAATTCCGCTTCAGCGTCCAAGCATTCAACTTCAAAGATGGCGGAGATA GTATTTTCGTACACTGTCATACGTATGTATGCAAAAATCAAACGGATGAA CAATGTCAATTCGGCTGCCATAACAATGGAAAACGGTCTCGCAGAAGCAT CGAGTTGAAAGAAGAGGTTGAAGGCTACATGACCTCTACACTAGAAATCA AAATCAAGGGTAAGTTATACATAGTAACTACCCTTTTATAATTTCAACTA GGTTAAAGCATGGTATAAGAAAGCCGTatggttaaaggttttatttttaa ataagtgtTTCCGAATTCATATTAGatacatattttatatcaggacagtg tctgtctattgttatattatgcagatataagcaaaaaatatttttctttt cctctttctgactaatcttgctccactccaaatgtgaaaaagctcgtaat taaaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaaac cttaaACTCGACTCTATTCAAATCTTGATTAAAATAAGCCAAGTCTTTCC TTGCCTTGCTTCTTTAAGCAATTTTGAAGGGCAAAAGTATTTTCACAATC ACTTTACCAACACGATTCCtttattcaaaacatttttgttcTAATCACCT AGGCGACAAGATTGCAGTTATCCACAACAGATCATCCAGTGATGATGAGA CAACAGACGATCAAAGCAAGACTATGTTGTTGTACCTTCAAATCCCTGTG GCCATCGCTGTCTTCGGTCTCCTTTTCTTCGCTTACAAATGTCTCCAAAA GAGAAATGCTTCTTCAAATGGTGGTGTCTTCTTTGAAGAAGAAATGaagt tgaagaaaaatgaaatgctGTAA

Coding sequence (CDS) from alignment at sc0000063_pilon:1504539..1512361+

>XLOC_016632 ID=XLOC_016632|Name=XLOC_016632|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3732bp|location=Sequence derived from alignment at sc0000063_pilon:1504539..1512361+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCGGGCGTTCCTTCTTGTCTCTCAATCCACGGTAACGGTGCTCACGT
CGAAGAGCATGATGATATCATCGGTCGAAGCGTCAGATGGCGGGCGTTCC
TTCTTGTCTCTCAATCCACGGTAACGGTGCTCACGTCGAAGAGCATGATG
ATATCATCGGTCGAAGCGTCAGAGAGATTGCATACGAGAGAGTTGGAGGA
CGTCGTATCATAACCAGAGCTGATCCACAACGAAGTGGAATCACTTACAC
TTACAATGGTACTATCGATAAACATCGTCCTGAAGGGATATATCCAACCT
GTTACCGTATCGTCACTGCAGAGATTGCATACGAGAGAGTTGGAGGACGT
CGTATCATAACCAGAGCTGATCCACAACGAAGTGGAATCACTTACACTTA
CAATGGTACTATCGATAAACATCGTCCTGAAGGGATATATCCAACCTGTT
ACCGTATCGTCACTGCAGATCCCGAAAACAACTACATATATTCCAAACAA
GTTTGCACACAAGTCTCAACTCTTAAAGAGATCCCGAAAACAACTACATA
TATTCCAAACAAGTTTGCACACAAGTCTCAACTCTTAAAGATGGTTTTGC
TTTGAAGACAGAATACAACTACCCAAAACACGGGGGTAAAGCAATGGTTG
ATGACGTCAAAACTTTGAATGTAGTCGTGCATGGAGCTATGGTTTTGCTT
TGAAGACAGAATACAACTACCCAAAACACGGGGGTAAAGCAATGGTTGAT
GACGTCAAAACTTTGAATGTAGTCGTGCATGGAGCTATGAAGGAACCAAC
AACGTTCAGTGTCGCCATCTTGGAATATGAAACAGACAGATCAGTTTATT
CTTTCGATTACAACGAACGTAACATAAAAGAACATTACAAAACGGAAAAC
GATCCTATAAAATTGTTCATCACAAATATCACCATCACTCTCCCCTACAT
GACGTCATTGGTGGCTAATCGAAAGTATTACGTCATCTTTAACAAGTATC
CCTACGCACTACCAGGGTGTAAAGATCACCAACGAGATTCACCAATGAAC
AAAGATGAATGGACATTCACTACTGAAAATGAAGGAACCAACAACGTTCA
GTGTCGCCATCTTGGAATATGAAACAGACAGATCAGTTTATTCTTTCGAT
TACAACGAACGTAACATAAAAGAACATTACAAAACGGAAAACGATCCTAT
AAAATTGTTCATCACAAATATCACCATCACTCTCCCCTACATGACGTCAT
TGGTGGCTAATCGAAAGTATTACGTCATCTTTAACAAGTATCCCTACGCA
CTACCAGGGTGTAAAGATCACCAACGAGATTCACCAATGAACAAAGATGA
ATGGACATTCACTACTGAAAcgGTGTCGAACAACCCACCCATGCCCATCG
ATGGCGGAGAGATAAAGCATGAAACAGAGTTGATGTGTAAACACGATTCT
TTTAGCTTCACTTTCAAACAACTTCACAATTCCACcgGTGTCGAACAACC
CACCCATGCCCATCGATGGCGGAGAGATAAAGCATGAAACAGAGTTGATG
TGTAAACACGATTCTTTTAGCTTCACTTTCAAACAACTTCACAATTCCAC
AATGCCAATCAAAAAAGTGACTTTGTTGAAGGATGATTGCGAGATGAGAT
ACGATCGAATGAGCAACATATACGACGCCTTGAACATCATGTTCACGAAG
TGCGGCACACAAATGAGTGAAGACGAACATCACATTGTCTTCAGCAATAT
CGCACGTGTCTATTACACTAATAGAACGACCTCCAATTCACTCATCACCC
GAACCAAAACCATGAATATCAAAATGCCAATCAAAAAAGTGACTTTGTTG
AAGGATGATTGCGAGATGAGATACGATCGAATGAGCAACATATACGACGC
CTTGAACATCATGTTCACGAAGTGCGGCACACAAATGAGTGAAGACGAAC
ATCACATTGTCTTCAGCAATATCGCACGTGTCTATTACACTAATAGAACG
ACCTCCAATTCACTCATCACCCGAACCAAAACCATGAATATCAAACTTGA
GTGTCGTTTACCAAAGACACAAATCAACACGTTAAGAGGAAAACCAACCA
GGAATGCAACGGACGGAGGAGACGGTTCTGGACCTGAGGGAATCGTTGTT
GGTCCACAGTTTATCGAAATTCACGACACTGCACACTTGAGTGTCGTTTA
CCAAAGACACAAATCAACACGTTAAGAGGAAAACCAACCAGGAATGCAAC
GGACGGAGGAGACGGTTCTGGACCTGAGGGAATCGTTGTTGGTCCACAGT
TTATCGAAATTCACGACACTGCACGATCAAACGCTTCATTCCGCATCGAT
TTCCAAGTTTACAAATCACTCCAATACGGTCACTCATACGGCAGAGAAGA
GTTTCCAATCTATTTGGCTGTCAGTAACAGAATCTACTTCGAAGTTAGCA
TcgataaaaaagatttaagcATCTTACCAAGAACCTGTTATGCTACCAAA
ACACAGAGTTACCAAGATGAACAGAGATATCATTTGATCCAAGATAGGAT
CAAACGCTTCATTCCGCATCGATTTCCAAGTTTACAAATCACTCCAATAC
GGTCACTCATACGGCAGAGAAGAGTTTCCAATCTATTTGGCTGTCAGTAA
CAGAATCTACTTCGAAGTTAGCATcgataaaaaagatttaagcATCTTAC
CAAGAACCTGTTATGCTACCAAAACACAGAGTTACCAAGATGAACAGAGA
TATCATTTGATCCAAGATAGTTGTCCTAAAGACCAGACGTACGTCATGCA
CAATGACAACATCGCTAAAAACAAATTCCGCTTCAGCGTCCAAGCATTCA
ACTTCAAAGATGGCGGAGATAGTATTTTCGTACACTGTCATACGTATGTA
TGCAAAAATCAAACGGATGAACAATGTCAATTCGGCTGCCATAACAATGG
AAAACGGTCTCGCAGAAGCATCGAGTTGAAAGAAGAGGTTGAAGGCTACA
TGACCTCTACACTAGAAATCAAAATCAAGGTTGTCCTAAAGACCAGACGT
ACGTCATGCACAATGACAACATCGCTAAAAACAAATTCCGCTTCAGCGTC
CAAGCATTCAACTTCAAAGATGGCGGAGATAGTATTTTCGTACACTGTCA
TACGTATGTATGCAAAAATCAAACGGATGAACAATGTCAATTCGGCTGCC
ATAACAATGGAAAACGGTCTCGCAGAAGCATCGAGTTGAAAGAAGAGGTT
GAAGGCTACATGACCTCTACACTAGAAATCAAAATCAAGGGCGACAAGAT
TGCAGTTATCCACAACAGATCATCCAGTGATGATGAGACAACAGACGATC
AAAGCAAGACTATGTTGTTGTACCTTCAAATCCCTGTGGCCATCGCTGTC
TTCGGTCTCCTTTTCTTCGCTTACAAATGTCTCCAAAAGAGAAATGCTTC
TTCAAATGGTGGTGTCTTCTTTGAAGAAGAAATGaagttgaagaaaaatg
aaatgctGTAAGCGACAAGATTGCAGTTATCCACAACAGATCATCCAGTG
ATGATGAGACAACAGACGATCAAAGCAAGACTATGTTGTTGTACCTTCAA
ATCCCTGTGGCCATCGCTGTCTTCGGTCTCCTTTTCTTCGCTTACAAATG
TCTCCAAAAGAGAAATGCTTCTTCAAATGGTGGTGTCTTCTTTGAAGAAG
AAATGaagttgaagaaaaatgaaatgctGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_016632XLOC_016632-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063_pilongenomesc0000063_pilon:1504539..1512361 +
Properties
Property NameValue
Aaloc1648-1866:7605
Aaloc1387-1644:6901
Aaloc1165-1383:6228
Aaloc1024-1161:5526
Aaloc802-1020:4442
Aaloc688-798:3302
Aaloc394-684:2405
Aaloc298-393:1428
Aaloc235-294:1119
Aaloc88-231:364
Aaloc1-84:1