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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000342_pilon:92270..96131- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_016578 ID=XLOC_016578|Name=XLOC_016578|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3862bp|location=Sequence derived from alignment at sc0000342_pilon:92270..96131- (Clytia hemisphaerica_ch_hm2_pilon)
ATCGAGCCACGGCAAACGCGTGTCAAAAACGTTCGTCCACAACGTCAAAT
ATCTAGTAGTTCAGATGACGAAGGAACTTATGTAAACCACAGAACTAGTT
TGAATCTTTCACTCGACGACGAAGATCCTTATACCAATCGACCAAGTCCT
TTAACCGCCGCTCCTTCAACGAAACCTAAACTCGTCGCTGACTCTAGTTT
TGATATGAACGTCGTTAACGTTAAAATCTCACACAAACGTCAAGGTTCGA
ATGTTAGTATTGCTTCGCTCACTGAACGATGCCGTGAAATCAAGGGCGAA
GCAATAGAACATAACACGACGCCCAAAAAAGCACCAATCTCCGCTCACGA
TGATAGCTTAGAAGCACATCTTCAACCGCATCACGAACCGCTGACGGTTC
AGCATCATCACAGCGCGGACGAATCAGATGAAGACGGAAAGTTGTACCCG
GTCAGCCCGTTTCCGCCACCGCAAACCACCACACGATCTATATACTCACA
GCGGAGTGTCAGTTTATCAGAACTCTCTTTCGAACATACACAGGACCTTG
GTGACGAGGATGAAAAATTACTCGAAGACATGATGGAATACGATCGAATC
GATGTTCAAAACGATTTAATCGAATCGATCGATTCGATAACGGATATCGA
GGATAACGATTCACCACCGCCTGTTGATATCAACGACCCAGGTTCTAAAG
GTAATTTCTTTAAAGTGATTTTTTTTCAGAAAAGATTTTTGGTGATATTT
TCCTTTTTGAATTTCAAAAAAAATAATGAGAATACTCTCACTTATTCGGA
CTTCTATTATTCGAATCTTTCTATAATTCGAACTTATTTCTAGTCCTCGT
CAAAGAGAAACCCTCTTGATAGAAATACTTTCCATAACTCTAATCTCCCT
GTAATTCGAACAAAAAAGATTCCCTGTTCCAGTTCGAATTAGCGAGTGTC
GACTGTAGAATTTACCTACCTATTCACGTGTGATTCATTCAGATTTTCTT
CTTTTTTTTCTAGCCATCCCTACTCCAAAACGAAAACGAAAGAAGAAAAC
ACGCAACAGTTATCCAAGTTCACCCAGCAGTTCCGATTTGGAAGGACGAC
CGGTCAACACTAAAGATTCCGCCGCTCCGGAAGCCATTCGCGACCGGTTA
CGGTACTTAGCGGACAGTTGGGCTGGTGTTGTTTTACCAGAAAAATGTGG
CCAAATCCAATCACTAGCCTGCTCGTCACAATTAGTTTGGTTGATTGACA
ACCTGGATCAAGTCTATTACTCGCCTGCTGTTTCCACTCACGTGTACACG
TGGAAGAGACTGGATACTAAAGACAGTAAAGCAATGCATATCGCAACCAA
TCAAAATGGATCTATTGTGTGGTGTATTGACCGAAACAATGTGGCCCATT
ATCGTGTTGGCATCAAAGAATCAACACCTCAAGGTCAGATTTAAAGATTT
TCTTTTAAATACCTTTTTAAAGATGCAATTACAACCCAAACATCATATTT
CGTACGGGCTTTGTCTCGATTGCCGATACCAAAATTTCGGGACAAGCTGG
ATTTTTCACAAGCTGGAGTTTGATTTGGTTGGTCGTTAACCTGTAATAAA
ACAATTTTGTTACTTTTTCTAAAGAACGCGTCATCTCTATTACTTCAAAT
AACCAATTAGTGAAGTCTCTTGTAAAAACTCCAGCCCATCCCAAAATTTC
ACTTCGTTATAAGATCAATCTTCATATGGTGTTTGCCTTCAAAAAATATT
CTAAGAAAATTTGGCGAATTTTTAGTAAAAGTCATTTTGAAATCCTTTTG
GACCTTTTAAACATTAGTGTAACGTTTTGAACACAATCTCCAATTCTACT
ATGTCAGGTGTTCAATGGGAGCCTTTCGAGAAGAACGTCCATTACATAGC
AGTCGACAAAGATAGCGTGTGGATGATCAAAAAGAATGGAGATGTCTTTG
TACGCACTGGTGTTTCCAACCAACGTCCATCGGGCACTACTTGGATAACC
ATCAAAGCTAACAGTGATCTTGTACAAATCTCTTGTACTGATGGTATTGT
TTGGGCGCTCGACATCTATAACCATGTACAAATTTTCCAAGGTATGGTAC
TATATACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCCCGATTTT
GGCGTGTTTTAAACCTCGCAAAAGTAAATGTTTTTGAAAATTCTTGGAAT
GGAAGGGCTTATGGGGGTTTATGCTCGCGAAAAATGCTTGACGTTTTTCT
TTTGTGGTTTTTCGACCTCGCGAAAGTTTGTAGTTTGTAAAGTATACAGC
TCATAGTATCAAAGTTCTTGCAGCTCAAAGAATTTACTCATCTAAATGTA
AAATAACTAATAATTTTTGTTCTTTTATTCCATTTGTTTTCTTTCCATTC
TATTAATTTGGTTAAAACTACTGAGAAGTTCTCATGAAAAGGATTGCTTA
AAGAAGCTTCTGCAATCTTTGGCACATGTTTATACAAGATTTTTGTGTAT
CTACGGTGTGTCGGAAATCAAGAAGGATTATTCTACATTGATTAGCAGTG
CTTTTTTGGCAGTTCAGAACCTGTATTCACACTGTCTATAATGTATCTTT
CAGGTGACTTACGAACATTGAGTGTGTCCAACCCTGCCGATCATGATTTA
TCATGGGTCGAACTACCCGGAATCGCCGCTAGCCATGTCACCTTAGGATC
GAAGGCTGTTTGCTGGATCATTGATAAAGACAATCAAGTCTGGTTCAACC
AAGACGTCTCGCGTGAAAACCCGGCTGGTGGAAATTGGTACCAACTCTCT
TTGGGGGAGAACAGATCAGAGAGCGCGGATTGGTTCTCTTCAGTTTTGTC
CTATTTCACTAAGGGCAACGAGCCAAAACAAATCATGGCCAATGACATGG
CTGGTGTCTTGATTCTCGGCAAACAAGGTTCAATACATGTTGCTCATGGT
CATTTATTGGGTACCACATGGCAATCTGCAGTTCCGACACAAATCAAATC
GAGCGGCTGTTGGACCTGTATTTCAGCTGGTGGAGCTGATATGAATAAAG
GTTACGTATGGACCTTACAACCGAACGGACAACTCGTATGTTTCAAGTCC
GGTCGACAAACTTATAATGTTCATCCGCCGAACCGTGTTGTGTTGAAGTA
CTGTTCCGCTGGTCCGCGTTCGCTGTGGGCTTTGACTTCCGGACAAGATG
TTTATGTCCGGTTAGGTATTTCGGATACTTGTCCGCAAGGTTTGAAGTGG
TTGAAAGTTGACATGTTAGCGCAAGGAAACCGTCGTCTTATGAACATATC
AGCTGGAAATCATGTCGTATGGGCGGTCGATTTCGAAGGAAACGCTTGGT
TCCAGATGGGACGTGAGGATCGGCGAGGGGCGGGTTACGCCCCTGCTTGG
GTTCCAGTCGAAGGATGTCCGCTTGACGGAAGCAAATTTACAAAGATTGT
TGTAGGGCCGGATGATTTAATTGTATGGGCGTGTGACAACAAGAATAACG
TCTATGCTAGGAAAGATATTACGGAAAACTTTTGGGTCGGTACTTCTTGG
GAGGTTGTGTCTGGTACCAGTGGTAAGGACATAGCTATCAGTAATAACCA
CGTGTGGAGCTTATGTCCTAACGGGGACGTCTTATGCAGGTTTGGCGTGT
CACCTAACAACGTTTGTGGTGACTACTGGAAAAAGGTTCCCGGAAATTTC
GAGAAAATCAGCGTCAGTGCTAATGATGAATTATGGGGTATCGATCGCTT
TGGACATTTATACCAACGCGAGACTTTACTGTTTTATGGAAACTCTCTTT
CATGTCGGGCACCATCTTATGATGATCTGTTCTCTGATCATAACGATTGG
GAATTCATCTAA Coding sequence (CDS) from alignment at sc0000342_pilon:92270..96131- >XLOC_016578 ID=XLOC_016578|Name=XLOC_016578|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5226bp|location=Sequence derived from alignment at sc0000342_pilon:92270..96131- (Clytia hemisphaerica_ch_hm2_pilon)
ATCGAGCCACGGCAAACGCGTGTCAAAAACGTTCGTCCACAACGTCAAAT
ATCTAGTAGTTCAGATGACGAAGGAACTTATGTAAACCACAGAACTAGTT
TGAATCTTTCACTCGACGACGAAGATCCTTATACCAATCGACCAAGTCCT
TTAACCGCCGCTCCTTCAACGAAACCTAAACTCGTCGCTGACTCTAGTTT
TGATATGAACGTCGTTAACGTTAAAATCTCACACAAACGTCAAGGTTCGA
ATGTTAGTATTGCTTCGCTCACTGAACGATGCCGTGAAATCAAGGGCGAA
GCAATAGAACATAACACGACGCCCAAAAAAGCACCAATCTCCGCTCACGA
TGATAGCTTAGAAGCACATCTTCAACCGCATCACGAACCGCTGACGGTTC
AGCATCATCACAGCGCGGACGAATCAGATGAAGACGGAAAGTTGTACCCG
GTCAGCCCGTTTCCGCCACCGCAAACCACCACACGATCTATATACTCACA
GCGGAGTGTCAGTTTATCAGAACTCTCTTTCGAACATACACAGGACCTTG
GTGACGAGGATGAAAAATTACTCGAAGACATGATGGAATACGATCGAATC
GATGTTCAAAACGATTTAATCGAATCGATCGATTCGATAACGGATATCGA
GGATAACGATTCACCACCGCCTGTTGATATCAACGACCCAGGTTCTAAAG
ATCGAGCCACGGCAAACGCGTGTCAAAAACGTTCGTCCACAACGTCAAAT
ATCTAGTAGTTCAGATGACGAAGGAACTTATGTAAACCACAGAACTAGTT
TGAATCTTTCACTCGACGACGAAGATCCTTATACCAATCGACCAAGTCCT
TTAACCGCCGCTCCTTCAACGAAACCTAAACTCGTCGCTGACTCTAGTTT
TGATATGAACGTCGTTAACGTTAAAATCTCACACAAACGTCAAGGTTCGA
ATGTTAGTATTGCTTCGCTCACTGAACGATGCCGTGAAATCAAGGGCGAA
GCAATAGAACATAACACGACGCCCAAAAAAGCACCAATCTCCGCTCACGA
TGATAGCTTAGAAGCACATCTTCAACCGCATCACGAACCGCTGACGGTTC
AGCATCATCACAGCGCGGACGAATCAGATGAAGACGGAAAGTTGTACCCG
GTCAGCCCGTTTCCGCCACCGCAAACCACCACACGATCTATATACTCACA
GCGGAGTGTCAGTTTATCAGAACTCTCTTTCGAACATACACAGGACCTTG
GTGACGAGGATGAAAAATTACTCGAAGACATGATGGAATACGATCGAATC
GATGTTCAAAACGATTTAATCGAATCGATCGATTCGATAACGGATATCGA
GGATAACGATTCACCACCGCCTGTTGATATCAACGACCCAGGTTCTAAAG
CCATCCCTACTCCAAAACGAAAACGAAAGAAGAAAACACGCAACAGTTAT
CCAAGTTCACCCAGCAGTTCCGATTTGGAAGGACGACCGGTCAACACTAA
AGATTCCGCCGCTCCGGAAGCCATTCGCGACCGGTTACGGTACTTAGCGG
ACAGTTGGGCTGGTGTTGTTTTACCAGAAAAATGTGGCCAAATCCAATCA
CTAGCCTGCTCGTCACAATTAGTTTGGTTGATTGACAACCTGGATCAAGT
CTATTACTCGCCTGCTGTTTCCACTCACGTGTACACGTGGAAGAGACTGG
ATACTAAAGACAGTAAAGCAATGCATATCGCAACCAATCAAAATGGATCT
ATTGTGTGGTGTATTGACCGAAACAATGTGGCCCATTATCGTGTTGGCAT
CAAAGAATCAACACCTCAAGCCATCCCTACTCCAAAACGAAAACGAAAGA
AGAAAACACGCAACAGTTATCCAAGTTCACCCAGCAGTTCCGATTTGGAA
GGACGACCGGTCAACACTAAAGATTCCGCCGCTCCGGAAGCCATTCGCGA
CCGGTTACGGTACTTAGCGGACAGTTGGGCTGGTGTTGTTTTACCAGAAA
AATGTGGCCAAATCCAATCACTAGCCTGCTCGTCACAATTAGTTTGGTTG
ATTGACAACCTGGATCAAGTCTATTACTCGCCTGCTGTTTCCACTCACGT
GTACACGTGGAAGAGACTGGATACTAAAGACAGTAAAGCAATGCATATCG
CAACCAATCAAAATGGATCTATTGTGTGGTGTATTGACCGAAACAATGTG
GCCCATTATCGTGTTGGCATCAAAGAATCAACACCTCAAGGTGTTCAATG
GGAGCCTTTCGAGAAGAACGTCCATTACATAGCAGTCGACAAAGATAGCG
TGTGGATGATCAAAAAGAATGGAGATGTCTTTGTACGCACTGGTGTTTCC
AACCAACGTCCATCGGGCACTACTTGGATAACCATCAAAGCTAACAGTGA
TCTTGTACAAATCTCTTGTACTGATGGTATTGTTTGGGCGCTCGACATCT
ATAACCATGTACAAATTTTCCAAGGTGTTCAATGGGAGCCTTTCGAGAAG
AACGTCCATTACATAGCAGTCGACAAAGATAGCGTGTGGATGATCAAAAA
GAATGGAGATGTCTTTGTACGCACTGGTGTTTCCAACCAACGTCCATCGG
GCACTACTTGGATAACCATCAAAGCTAACAGTGATCTTGTACAAATCTCT
TGTACTGATGGTATTGTTTGGGCGCTCGACATCTATAACCATGTACAAAT
TTTCCAAGGTGACTTACGAACATTGAGTGTGTCCAACCCTGCCGATCATG
ATTTATCATGGGTCGAACTACCCGGAATCGCCGCTAGCCATGTCACCTTA
GGATCGAAGGCTGTTTGCTGGATCATTGATAAAGACAATCAAGTCTGGTT
CAACCAAGACGTCTCGCGTGAAAACCCGGCTGGTGGAAATTGGTACCAAC
TCTCTTTGGGGGAGAACAGATCAGAGAGCGCGGATTGGTTCTCTTCAGTT
TTGTCCTATTTCACTAAGGGCAACGAGCCAAAACAAATCATGGCCAATGA
CATGGCTGGTGTCTTGATTCTCGGCAAACAAGGTTCAATACATGTTGCTC
ATGGTCATTTATTGGGTACCACATGGCAATCTGCAGTTCCGACACAAATC
AAATCGAGCGGCTGTTGGACCTGTATTTCAGCTGGTGGAGCTGATATGAA
TAAAGGTTACGTATGGACCTTACAACCGAACGGACAACTCGTATGTTTCA
AGTCCGGTCGACAAACTTATAATGTTCATCCGCCGAACCGTGTTGTGTTG
AAGTACTGTTCCGCTGGTCCGCGTTCGCTGTGGGCTTTGACTTCCGGACA
AGATGTTTATGTCCGGTTAGGTATTTCGGATACTTGTCCGCAAGGTTTGA
AGTGGTTGAAAGTTGACATGTTAGCGCAAGGAAACCGTCGTCTTATGAAC
ATATCAGCTGGAAATCATGTCGTATGGGCGGTCGATTTCGAAGGAAACGC
TTGGTTCCAGATGGGACGTGAGGATCGGCGAGGGGCGGGTTACGCCCCTG
CTTGGGTTCCAGTCGAAGGATGTCCGCTTGACGGAAGCAAATTTACAAAG
ATTGTTGTAGGGCCGGATGATTTAATTGTATGGGCGTGTGACAACAAGAA
TAACGTCTATGCTAGGAAAGATATTACGGAAAACTTTTGGGTCGGTACTT
CTTGGGAGGTTGTGTCTGGTACCAGTGGTAAGGACATAGCTATCAGTAAT
AACCACGTGTGGAGCTTATGTCCTAACGGGGACGTCTTATGCAGGTTTGG
CGTGTCACCTAACAACGTTTGTGGTGACTACTGGAAAAAGGTTCCCGGAA
ATTTCGAGAAAATCAGCGTCAGTGCTAATGATGAATTATGGGGTATCGAT
CGCTTTGGACATTTATACCAACGCGAGACTTTACTGTTTTATGGAAACTC
TCTTTCATGTCGGGCACCATCTTATGATGATCTGTTCTCTGATCATAACG
ATTGGGAATTCATCTAAGTGACTTACGAACATTGAGTGTGTCCAACCCTG
CCGATCATGATTTATCATGGGTCGAACTACCCGGAATCGCCGCTAGCCAT
GTCACCTTAGGATCGAAGGCTGTTTGCTGGATCATTGATAAAGACAATCA
AGTCTGGTTCAACCAAGACGTCTCGCGTGAAAACCCGGCTGGTGGAAATT
GGTACCAACTCTCTTTGGGGGAGAACAGATCAGAGAGCGCGGATTGGTTC
TCTTCAGTTTTGTCCTATTTCACTAAGGGCAACGAGCCAAAACAAATCAT
GGCCAATGACATGGCTGGTGTCTTGATTCTCGGCAAACAAGGTTCAATAC
ATGTTGCTCATGGTCATTTATTGGGTACCACATGGCAATCTGCAGTTCCG
ACACAAATCAAATCGAGCGGCTGTTGGACCTGTATTTCAGCTGGTGGAGC
TGATATGAATAAAGGTTACGTATGGACCTTACAACCGAACGGACAACTCG
TATGTTTCAAGTCCGGTCGACAAACTTATAATGTTCATCCGCCGAACCGT
GTTGTGTTGAAGTACTGTTCCGCTGGTCCGCGTTCGCTGTGGGCTTTGAC
TTCCGGACAAGATGTTTATGTCCGGTTAGGTATTTCGGATACTTGTCCGC
AAGGTTTGAAGTGGTTGAAAGTTGACATGTTAGCGCAAGGAAACCGTCGT
CTTATGAACATATCAGCTGGAAATCATGTCGTATGGGCGGTCGATTTCGA
AGGAAACGCTTGGTTCCAGATGGGACGTGAGGATCGGCGAGGGGCGGGTT
ACGCCCCTGCTTGGGTTCCAGTCGAAGGATGTCCGCTTGACGGAAGCAAA
TTTACAAAGATTGTTGTAGGGCCGGATGATTTAATTGTATGGGCGTGTGA
CAACAAGAATAACGTCTATGCTAGGAAAGATATTACGGAAAACTTTTGGG
TCGGTACTTCTTGGGAGGTTGTGTCTGGTACCAGTGGTAAGGACATAGCT
ATCAGTAATAACCACGTGTGGAGCTTATGTCCTAACGGGGACGTCTTATG
CAGGTTTGGCGTGTCACCTAACAACGTTTGTGGTGACTACTGGAAAAAGG
TTCCCGGAAATTTCGAGAAAATCAGCGTCAGTGCTAATGATGAATTATGG
GGTATCGATCGCTTTGGACATTTATACCAACGCGAGACTTTACTGTTTTA
TGGAAACTCTCTTTCATGTCGGGCACCATCTTATGATGATCTGTTCTCTG
ATCATAACGATTGGGAATTCATCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000342_pilon | genome | sc0000342_pilon:92270..96131 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1357-2613:1258 |
| Aaloc | 1123-1353:2004 |
| Aaloc | 703-1119:2848 |
| Aaloc | 1-699:3863 |
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