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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000343_pilon:175728..182846- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_016407 ID=XLOC_016407|Name=XLOC_016407|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7119bp|location=Sequence derived from alignment at sc0000343_pilon:175728..182846- (Clytia hemisphaerica_ch_hm2_pilon) CAACTGAGAAATTTCACATTCAAACTCGCCATTCCAACAAATCAAACACT
TTGCTCGGCCAATGCAACAAATTTGACCTCATCAACAAACTCAAATTTGT
TTCCTAACTGCACGGATAACTTAACCGTCAAATCTACCCCTAACCATCCA
ATCTTAACACCCAACATGGATGCGAAGACCGCTATTGATGCTTTGTTTTG
GATGAAAACAGTTTCAATGGTGTTAGGGATCATCTTCAATATTTTGGTGA
TTGTGGTACGTGGCAACAAATTTGTGAGACAGCGCAGAATCTCTTCCTAC
CACTTCATTATTCTACAGGTATAAGCTTTTCTAACAGTAATGAACACTCC
TGTCTCACAGCCCCGGTGGAACCTTCATCTTCAGTGGGGATAAAAATCCC
TATCGAAATCCCAATGGGTATAGAAATTTTATTGTTCCAAGGTTAAACAA
ATCCAGTGGGGATGATTTTGGAATGCACTTTTCAGACATTGACTTTCGAG
TGGGGATGAAATCAAAGTTAATTTCTTGGTGGGGCTGAAATTTCCAGTGG
GGATGGGGTCCCAGTGGGTCTGTGACACGGGTGTTAATGAGTGCTTGAAG
TTGTTTCTCCAAAAATTGAAAATAATAGAGGAATTTTTGTGAGCACTAAC
TTTGGCCAGTAACTAGCTTCGACCTAACTTTTATATTTTTGCGAGAACTG
ATTTTGGAAAATGACAGGTCTGATTGTCTACACAAGATCAATAAAAAAGG
AAATAGTTTAGGAGGCGGGAAAAATTTGAAAACGGCGGAGTATAAGCAGT
GGAGGAGGTGTTTACAGTGTTTGTTCCAAACTCTATCGCCACTTTTTCCC
GCGTTTACTGACCTTCTGACGGACAATAGCAATACTTGCATTAAAAACAA
CACACCAAAAATAGTATAAATACTTTGTTAACAGGTTGAAATATATTTAA
TCATTTCAATCTTTGAAAATTATATCAATAATCTCAATCGTTTATTTTGA
ATGATTTCAGATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTT
TCGAAGTTGAGAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCA
GCGTGTCGTATTGTGTATCCATTGTCGGCAATGTCTGCAGGTGTCCCGAT
CCTCCTCATGTTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATG
CATTAACTCACAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTC
ATTTGGGTTTTTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAA
GATTCATGATCAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGG
ACAAGGTGGTTACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTG
TTGCTAAGCACTTTATTCCACTGTCATATCTACCATTTGTTCGACGTCAC
ACGAAGAAAATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATT
GAATAATAACAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCA
AGACATCGTCCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAA
ATGCAACTGAGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAA
TGAAGAATTGTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTA
AAACTATCCGTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTA
CGACATCGCTTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCG
TTTAAAAGTACAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCA
ATCTACCAACACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCC
CTTCAAACAAGAATCTACATGATTTTCATCACTGGCTTGGGTTCAATGCA
TTGTTTTATCAACGGTATCATATACAGTTTAATGGATTACAAATTTCGCA
AAGAATTCCGTCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAA
AAGAAATATCAACAAAAAAGACATTCCTACCCTTCCAAGAGCACTCAAAT
GCATTCTGTCAGTGGGAATCAGTGTTGAAGAGGAGAAAATATAATCTGGT
TATCCTGGTAAGATAGTTGAGTGACTTAGCGAAAGATATAGAAAGGCTAA
GATACGCCGGGAAAGATATTCGAAAATTGAGAAAAATGAGACATTTTGGG
AGAGACGTTGTTGAGTTACGACCCCTCTTATTATTCTAAAATATTGATAT
TTCAAGAAGAAAACAAAATCAAAACAATATGAATACAATGAACGATTCAC
ATCACTGGGTTGCACCATTTGGGGATTGAAGTGTCACTGGATAAATTTAG
ATTTCTTCTTGAGATCATCGTTAACTACAAAGGACTACAGATATCATTTC
ATTGAATGTATATTTAAAGTATTCTAATTTTTAATGAAAATATTCTATAT
GACAAAAATTCAAAGTTTCTCCAAGATTTCTTTGTCTAAAGGAAAATGTA
CGTGTACGTCTGGTTACCCAACTTTATTGGCAAAGAAAAATCGAAGATTC
CAGTAAAATATTGACAAGACTTTGTAGGGGGGGGGGCATATCATCACCTG
TTTAGATATTTCTCAGTGCATCGTACTCTCCAAGCTGGCACAGAGCGTCA
TAACGACGTCAATCTGACGTTTCAAACGTTCAATTATCGTTAGACAGATG
TTAAAATAACGTTTTGTACCCAGTGAGTATTTTAAGACGGTTCGGATAAA
ATAAAGGTTTTAAATTGCTATATTAGGATGGTAAATTTTTGATGGGTGAG
GATTTTAGATACTATTGTTTGAGGCTCAGAAATTCAAGAGATCATCTCTT
TTGCACTTAGGGTGATAAAAATCCCTATCGAAATCCCAATGGGTATAGAA
ATTTTATTGTTCCAAGGTTAAACAAATCCAGTGGGGATGATTTTGGAATG
CACTTTTCAGACATTGACTTTCGAGTGGGGATGAAATCAAAGTTAATTTC
TTGGTGGGGCTGAAATTTCCAGTGGGAATGGGGTCCCAGTGGGTCTGTGA
CACGGGTGCTAATGAGTGCTTGAAGTTGTTTCTCCAAAAATTGAAAATAA
TAGAGGAATTTTTGTGAGCACTAACTTTGGCCAGTAACTAGCTTCGACCT
AACTTTTATATTTTTGCGAGAACTGATTTTGGAAAATGACAGGTCTGATT
GTCTACACAAGATCAATAAAAAAGGGAATAGTTTAGGAGGCGGGAAAAAT
TTGAAAACGGCGGAGTATAAGCAGTGGAGGAGGTGTTTACAGTGTTTGTT
CCAAACTCTATCGCCACTTTTTCCCGCGTTTACTGACCTTCTGACGGACA
ATAGCAATACTTGCATTAAAAACAACACACCAAAAATAGTATAAATACTT
TGTTAACAGGTTGAAATATATTTAATCATTTCAATCTTTGAAAATTATAT
CAATAATCTCAATCGTTTATTTTGAATGATTTCAGATCGCGTTGGCAGAT
CTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGAGAAGCATTTGAATAA
CTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTATTGTGTACCCATTGT
CGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATGTTGTTACTCGCAATC
GAACGTTATCTTGGAGTCATCAATGCATTAACTCACAAACTCCGAACTCG
AAGCATTCTTCTAGTTGGTATATTCATTTGGGTTTTTTCGTTTATTGTAA
TCCTCCCCATTCTCTTTTCACTCAAGATTCATGATCAGTTTGGCGCATGC
ACAGAAGAAATGGACCCATTATTGGACAAGGTGGTTACTATTTTCTATTG
GTTGTATTCATGTTGATCCCACTGTTGCTAAGCACTTTATTCCACTGTCA
TATCTACCATTTTGTTCGACGTCACACGAAGAAAATGTCGATGCACGTGC
AAAGTAAAACGCCACCCGGCCAATTGAATAATAACAGGCTTGAAGGAAAT
ACTTCCGTCGCGTCCTTGATCACCAAGACATCGTCCGTCGCTGGTGATTG
CGACACGTACCTTGTGACGGAGAAAATGCAACTGAGTAATAAGCCAAGCT
CCGTTGGAAGTACTTGCGATGAAAATGAAGAATTGTGTCCTCAGTCAAAG
AAATCAGTCTTGAAAATCGTGGTAAAACTATCCGTAAGATTTGTCACAGT
GGAACTACCATGTGCTACAAGGTACGACATCGCTTAACTGGAATCCGTCA
CCAGCGTAAAGAGAAAACCAGGCGTTTAAAAGTACAAATTCTGCTGGCAA
TCACTGTCTGTTTCCTTGTTGTCAATCTACCAACACATCTCTGGCACACT
TGTAATCTTTACTTCAAATTCTCCCTTCAAACAAGAATCTACATGATTTT
CATCACTGGTTTGGGTTCAATGCATTGTTTTATCAACGGTATCATATACA
GTTTAATGGATTACAAATTTCGCAAAGAATTCCGTCTATTGGTTAAAACA
TTGATCTATGGGAGAGCATACGAAAAGAAATATCAACAAAAAAGACATTC
CTACCCTTCCAAGAGCACTCAAATGCATTCTGTCAGTGGGAATCAGTGTT
GAAGAGGAGAAAATATAATCTGGTTATCCTGGTAAGATAGTTGAGTGACT
TAGCGAAAGATATAGAAAGGCTAAGATACGCCGGGAAAGATATTCGAAAA
TTGAGAAAAAATGAGACATTTTGGGAGAGACGTTGTTGAGTTACGACCCC
TCTTATTATTCTAAAATATTGATATTTCAAGAAGAAAACAAAATCAAAAC
AATATGAATACAATGAACGATTCACATCACTGGGTTGCACCATTTGGGGA
TTGAAGTGTCACTGGATAAATTTAGATTTCTTCTTGAGATCATCGTTAAC
TACAAAGGACTACAGATATCATTTCATTGAATGTATATTTAAAGTATTCT
AATTTTTAATGAAAATATTCTATATGACAAAAATTCAAAGTTTCTCCAAG
ATTTCTTTGTCTAAAGGAAAATGTACGTGTACGTCTGGTTACCCAACTTT
ATTGGCAAAGAAAAATCGAAGATTCCAGTAAAATATTGACAAGACTTTGT
AGGGGGGGGGGCATATCATCACCTGTTTAGATATTTCTCAGTGCATCGTA
CTCTCCAAGCTGGCACAGAGCGTCATAACGACGTCAATCTGACGTTTCAA
ACGTTCAATTATCGTTAGACAGATGTTAAAATAACGTTTTGTACCCAGTG
AGTATTTTAAGACGGTTCGGATAAAATAAAGGTTTTAAATTGCTATATTA
GGATGGTAAATTTTTGATGGGTGAGGATTTTAGATACTATTGTTTGAGGC
TCAGAAATTCAAGAGATCATCTCTTTTGCACTTAGGGTGATAAAAATCCC
TATCGAAATCCCAATGGGTATAGAAATTTTATTGTTCCAAGGTTAAACAA
ATCCAGTGGGGATGATTTTGGAATGCACTTTTCAGACATTGACTTTCGAG
TGGGGATGAAATCAAAGTTAATTTTGGTGGGGCTGAAATTTCCAGTGGGA
ATGGGGTCCCAGTGGGTCTGTGACACGGGTGCTAATGAGTGCTTGAAGTT
GTTTCTCCAAAAATTGAAAATAATAGAGGAATTTTTGTGAGCACTAACTT
TGGCCAGTAACTAGCTTCGACCTAACTTTTATATTTTTGCGAGAACTGAT
TTTGGAAAATGACAGGTCTGATTGTCTACACAAGATCAATAAAAAGGGAA
TAGTTAGGAGGCGGGAAAAAATTTGAAAACGGCGGAGTATAAGCAGTGGA
GGAGGTGTTTACAGTGTTTGTTCCAAACTCTATCGCCACTTTTTCCCGCG
TTTACTGACCTTCTGACGGACAATAGCAATACTTGCATTAAAAACAACAC
ACCAAAAATAGTATAAATACTTTGTTAACAGGTTGAAATATATTTAATCA
TTTCAATCTTTGAAAATTATCAATAATCTCAATCGTTTATTTTGAATGAT
TTCAGATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTTTCGAA
GTTGAGAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCAGCGTG
TCGTATTGTGTACCCATTGTCGGCAATGTCTGCAGGTGTCCCGATCCTCC
TCATGTTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATGCATTA
ACTCACAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTCATTTG
GGTTTTTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAAGATTC
ATGATCAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGGACAAG
GTGGTTACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTGTTGCT
AAGCACTTTATTCCACTGTCATATCTACCATTTTGTTCGACGTCACACGA
AGAAAATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATTGAAT
AATAACAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCAAGAC
ATCGTCCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAAATGC
AACTGAGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAATGAA
GAATTGTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTAAAAC
TATCCGTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTACGAC
ATCGCTTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCGTTTA
AAGTACAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCAATCTA
CCAACACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCCCTTCA
AACAAGAATCTACATGATTTTCATCACTGGTTTGGGTTCAATGCATTGTT
TTATCAACGGTATCATATACAGTTTAATGGATTACAAATTTCGCAAAGAA
TTCCGTCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAAAAGAA
ATATCAACAAAAAAGACAT Coding sequence (CDS) from alignment at sc0000343_pilon:175728..182846- >XLOC_016407 ID=XLOC_016407|Name=XLOC_016407|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2764bp|location=Sequence derived from alignment at sc0000343_pilon:175728..182846- (Clytia hemisphaerica_ch_hm2_pilon) CAACTGAGAAATTTCACATTCAAACTCGCCATTCCAACAAATCAAACACT TTGCTCGGCCAATGCAACAAATTTGACCTCATCAACAAACTCAAATTTGT TTCCTAACTGCACGGATAACTTAACCGTCAAATCTACCCCTAACCATCCA ATCTTAACACCCAACATGGATGCGAAGACCGCTATTGATGCTTTGTTTTG GATGAAAACAGTTTCAATGGTGTTAGGGATCATCTTCAATATTTTGGTGA TTGTGGTACGTGGCAACAAATTTGTGAGACAGCGCAGAATCTCTTCCTAC CACTTCATTATTCTACAGCAACTGAGAAATTTCACATTCAAACTCGCCAT TCCAACAAATCAAACACTTTGCTCGGCCAATGCAACAAATTTGACCTCAT CAACAAACTCAAATTTGTTTCCTAACTGCACGGATAACTTAACCGTCAAA TCTACCCCTAACCATCCAATCTTAACACCCAACATGGATGCGAAGACCGC TATTGATGCTTTGTTTTGGATGAAAACAGTTTCAATGGTGTTAGGGATCA TCTTCAATATTTTGGTGATTGTGGTACGTGGCAACAAATTTGTGAGACAG CGCAGAATCTCTTCCTACCACTTCATTATTCTACAGATCGCGTTGGCAGA TCTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGAGAAGCATTTGAATA ACTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTATTGTGTACCCATTG TCGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATGTTGTTACTCGCAAT CGAACGTTATCTTGGAGTCATCAATGCATTAACTCACAAACTCCGAACTC GAAGCATTCTTCTAGTTGGTATATTCATTTGGGTTTTTTCGTTTATTGTA ATCCTCCCCATTCTCTTTTCACTCAAGATTCATGATCAGTTTGGCGCATG CACAGAAGAAATGGACCCATTATTGGACAAGGTGGTTACTATTTTCTATT TGGTTGTATTCATGTTGATCCCACTGTTGCTAAGCACTTTATTCCACTGT CATATCTACCATTTTGTTCGACGTCACACGAAGAAAATGTCGATGCACGT GCAAAGTAAAACGCCACCCGGCCAATTGAATAATAACAGGCTTGAAGGAA ATACTTCCGTCGCGTCCTTGATCACCAAGACATCGTCCGTCGCTGGTGAT TGCGACACGTACCTTGTGACGGAGAAAATGCAACTGAGTAATAAGCCAAG CTCCGTTGGAAGTACTTGCGATGAAAATGAAGAATTGTGTCCTCAGTCAA AGAAATCAGTCTTGAAAATCGGTGGTAAAACTATCCGTAAGATTTGTCAC AGTGGAACTACCATGTGCTACAAGGTACGACATCGCTTAACTGGAATCCG TCACCAGCGTAAAGAGAAAACCAGGCGTTTAAAGTACAAATTCTGCTGGC AATCACTGTCTGTTTCCTTGTTGTCAATCTACCAACACATCTCTGGCACA CTTGTAATCTTTACTTCAAATTCTCCCTTCAAACAAGAATCTACATGATT TTCATCACTGGTTTGGGTTCAATGCATTGTTTTATCAACGGTATCATATA CAGTTTAATGGATTACAAATTTCGCAAAGAATTCCGTCTATTGGTTAAAA CATTGATCTATGGGAGAGCATACGAAAAGAAATATCAACAAAAAAGACAT ATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGA GAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTA TTGTGTACCCATTGTCGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATG TTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATGCATTAACTCA CAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTCATTTGGGTTT TTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAAGATTCATGAT CAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGGACAAGGTGGT TACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTGTTGCTAAGCA CTTTATTCCACTGTCATATCTACCATTTTGTTCGACGTCACACGAAGAAA ATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATTGAATAATAA CAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCAAGACATCGT CCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAAATGCAACTG AGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAATGAAGAATT GTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTAAAACTATCC GTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTACGACATCGC TTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCGTTTAAAGTA CAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCAATCTACCAAC ACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCCCTTCAAACAA GAATCTACATGATTTTCATCACTGGTTTGGGTTCAATGCATTGTTTTATC AACGGTATCATATACAGTTTAATGGATTACAAATTTCGCAAAGAATTCCG TCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAAAAGAAATATC AACAAAAAAGACAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000343_pilon | genome | sc0000343_pilon:175728..182846 - |
Properties
| Property Name | Value |
| Aaloc | 1120-1389:271 |
| Aaloc | 325-1116:1065 |
| Aaloc | 7-324:7120 |
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