XLOC_016407 (mRNA) -

Overview
NameXLOC_016407
Unique NameXLOC_016407
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000343_pilon:175728..182846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016407 ID=XLOC_016407|Name=XLOC_016407|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7119bp|location=Sequence derived from alignment at sc0000343_pilon:175728..182846- (Clytia hemisphaerica_ch_hm2_pilon)
CAACTGAGAAATTTCACATTCAAACTCGCCATTCCAACAAATCAAACACT TTGCTCGGCCAATGCAACAAATTTGACCTCATCAACAAACTCAAATTTGT TTCCTAACTGCACGGATAACTTAACCGTCAAATCTACCCCTAACCATCCA ATCTTAACACCCAACATGGATGCGAAGACCGCTATTGATGCTTTGTTTTG GATGAAAACAGTTTCAATGGTGTTAGGGATCATCTTCAATATTTTGGTGA TTGTGGTACGTGGCAACAAATTTGTGAGACAGCGCAGAATCTCTTCCTAC CACTTCATTATTCTACAGGTATAAGCTTTTCTAACAGTAATGAACACTCC TGTCTCACAGCCCCGGTGGAACCTTCATCTTCAGTGGGGATAAAAATCCC TATCGAAATCCCAATGGGTATAGAAATTTTATTGTTCCAAGGTTAAACAA ATCCAGTGGGGATGATTTTGGAATGCACTTTTCAGACATTGACTTTCGAG TGGGGATGAAATCAAAGTTAATTTCTTGGTGGGGCTGAAATTTCCAGTGG GGATGGGGTCCCAGTGGGTCTGTGACACGGGTGTTAATGAGTGCTTGAAG TTGTTTCTCCAAAAATTGAAAATAATAGAGGAATTTTTGTGAGCACTAAC TTTGGCCAGTAACTAGCTTCGACCTAACTTTTATATTTTTGCGAGAACTG ATTTTGGAAAATGACAGGTCTGATTGTCTACACAAGATCAATAAAAAAGG AAATAGTTTAGGAGGCGGGAAAAATTTGAAAACGGCGGAGTATAAGCAGT GGAGGAGGTGTTTACAGTGTTTGTTCCAAACTCTATCGCCACTTTTTCCC GCGTTTACTGACCTTCTGACGGACAATAGCAATACTTGCATTAAAAACAA CACACCAAAAATAGTATAAATACTTTGTTAACAGGTTGAAATATATTTAA TCATTTCAATCTTTGAAAATTATATCAATAATCTCAATCGTTTATTTTGA ATGATTTCAGATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTT TCGAAGTTGAGAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCA GCGTGTCGTATTGTGTATCCATTGTCGGCAATGTCTGCAGGTGTCCCGAT CCTCCTCATGTTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATG CATTAACTCACAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTC ATTTGGGTTTTTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAA GATTCATGATCAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGG ACAAGGTGGTTACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTG TTGCTAAGCACTTTATTCCACTGTCATATCTACCATTTGTTCGACGTCAC ACGAAGAAAATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATT GAATAATAACAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCA AGACATCGTCCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAA ATGCAACTGAGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAA TGAAGAATTGTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTA AAACTATCCGTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTA CGACATCGCTTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCG TTTAAAAGTACAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCA ATCTACCAACACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCC CTTCAAACAAGAATCTACATGATTTTCATCACTGGCTTGGGTTCAATGCA TTGTTTTATCAACGGTATCATATACAGTTTAATGGATTACAAATTTCGCA AAGAATTCCGTCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAA AAGAAATATCAACAAAAAAGACATTCCTACCCTTCCAAGAGCACTCAAAT GCATTCTGTCAGTGGGAATCAGTGTTGAAGAGGAGAAAATATAATCTGGT TATCCTGGTAAGATAGTTGAGTGACTTAGCGAAAGATATAGAAAGGCTAA GATACGCCGGGAAAGATATTCGAAAATTGAGAAAAATGAGACATTTTGGG AGAGACGTTGTTGAGTTACGACCCCTCTTATTATTCTAAAATATTGATAT TTCAAGAAGAAAACAAAATCAAAACAATATGAATACAATGAACGATTCAC ATCACTGGGTTGCACCATTTGGGGATTGAAGTGTCACTGGATAAATTTAG ATTTCTTCTTGAGATCATCGTTAACTACAAAGGACTACAGATATCATTTC ATTGAATGTATATTTAAAGTATTCTAATTTTTAATGAAAATATTCTATAT GACAAAAATTCAAAGTTTCTCCAAGATTTCTTTGTCTAAAGGAAAATGTA CGTGTACGTCTGGTTACCCAACTTTATTGGCAAAGAAAAATCGAAGATTC CAGTAAAATATTGACAAGACTTTGTAGGGGGGGGGGCATATCATCACCTG TTTAGATATTTCTCAGTGCATCGTACTCTCCAAGCTGGCACAGAGCGTCA TAACGACGTCAATCTGACGTTTCAAACGTTCAATTATCGTTAGACAGATG TTAAAATAACGTTTTGTACCCAGTGAGTATTTTAAGACGGTTCGGATAAA ATAAAGGTTTTAAATTGCTATATTAGGATGGTAAATTTTTGATGGGTGAG GATTTTAGATACTATTGTTTGAGGCTCAGAAATTCAAGAGATCATCTCTT TTGCACTTAGGGTGATAAAAATCCCTATCGAAATCCCAATGGGTATAGAA ATTTTATTGTTCCAAGGTTAAACAAATCCAGTGGGGATGATTTTGGAATG CACTTTTCAGACATTGACTTTCGAGTGGGGATGAAATCAAAGTTAATTTC TTGGTGGGGCTGAAATTTCCAGTGGGAATGGGGTCCCAGTGGGTCTGTGA CACGGGTGCTAATGAGTGCTTGAAGTTGTTTCTCCAAAAATTGAAAATAA TAGAGGAATTTTTGTGAGCACTAACTTTGGCCAGTAACTAGCTTCGACCT AACTTTTATATTTTTGCGAGAACTGATTTTGGAAAATGACAGGTCTGATT GTCTACACAAGATCAATAAAAAAGGGAATAGTTTAGGAGGCGGGAAAAAT TTGAAAACGGCGGAGTATAAGCAGTGGAGGAGGTGTTTACAGTGTTTGTT CCAAACTCTATCGCCACTTTTTCCCGCGTTTACTGACCTTCTGACGGACA ATAGCAATACTTGCATTAAAAACAACACACCAAAAATAGTATAAATACTT TGTTAACAGGTTGAAATATATTTAATCATTTCAATCTTTGAAAATTATAT CAATAATCTCAATCGTTTATTTTGAATGATTTCAGATCGCGTTGGCAGAT CTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGAGAAGCATTTGAATAA CTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTATTGTGTACCCATTGT CGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATGTTGTTACTCGCAATC GAACGTTATCTTGGAGTCATCAATGCATTAACTCACAAACTCCGAACTCG AAGCATTCTTCTAGTTGGTATATTCATTTGGGTTTTTTCGTTTATTGTAA TCCTCCCCATTCTCTTTTCACTCAAGATTCATGATCAGTTTGGCGCATGC ACAGAAGAAATGGACCCATTATTGGACAAGGTGGTTACTATTTTCTATTG GTTGTATTCATGTTGATCCCACTGTTGCTAAGCACTTTATTCCACTGTCA TATCTACCATTTTGTTCGACGTCACACGAAGAAAATGTCGATGCACGTGC AAAGTAAAACGCCACCCGGCCAATTGAATAATAACAGGCTTGAAGGAAAT ACTTCCGTCGCGTCCTTGATCACCAAGACATCGTCCGTCGCTGGTGATTG CGACACGTACCTTGTGACGGAGAAAATGCAACTGAGTAATAAGCCAAGCT CCGTTGGAAGTACTTGCGATGAAAATGAAGAATTGTGTCCTCAGTCAAAG AAATCAGTCTTGAAAATCGTGGTAAAACTATCCGTAAGATTTGTCACAGT GGAACTACCATGTGCTACAAGGTACGACATCGCTTAACTGGAATCCGTCA CCAGCGTAAAGAGAAAACCAGGCGTTTAAAAGTACAAATTCTGCTGGCAA TCACTGTCTGTTTCCTTGTTGTCAATCTACCAACACATCTCTGGCACACT TGTAATCTTTACTTCAAATTCTCCCTTCAAACAAGAATCTACATGATTTT CATCACTGGTTTGGGTTCAATGCATTGTTTTATCAACGGTATCATATACA GTTTAATGGATTACAAATTTCGCAAAGAATTCCGTCTATTGGTTAAAACA TTGATCTATGGGAGAGCATACGAAAAGAAATATCAACAAAAAAGACATTC CTACCCTTCCAAGAGCACTCAAATGCATTCTGTCAGTGGGAATCAGTGTT GAAGAGGAGAAAATATAATCTGGTTATCCTGGTAAGATAGTTGAGTGACT TAGCGAAAGATATAGAAAGGCTAAGATACGCCGGGAAAGATATTCGAAAA TTGAGAAAAAATGAGACATTTTGGGAGAGACGTTGTTGAGTTACGACCCC TCTTATTATTCTAAAATATTGATATTTCAAGAAGAAAACAAAATCAAAAC AATATGAATACAATGAACGATTCACATCACTGGGTTGCACCATTTGGGGA TTGAAGTGTCACTGGATAAATTTAGATTTCTTCTTGAGATCATCGTTAAC TACAAAGGACTACAGATATCATTTCATTGAATGTATATTTAAAGTATTCT AATTTTTAATGAAAATATTCTATATGACAAAAATTCAAAGTTTCTCCAAG ATTTCTTTGTCTAAAGGAAAATGTACGTGTACGTCTGGTTACCCAACTTT ATTGGCAAAGAAAAATCGAAGATTCCAGTAAAATATTGACAAGACTTTGT AGGGGGGGGGGCATATCATCACCTGTTTAGATATTTCTCAGTGCATCGTA CTCTCCAAGCTGGCACAGAGCGTCATAACGACGTCAATCTGACGTTTCAA ACGTTCAATTATCGTTAGACAGATGTTAAAATAACGTTTTGTACCCAGTG AGTATTTTAAGACGGTTCGGATAAAATAAAGGTTTTAAATTGCTATATTA GGATGGTAAATTTTTGATGGGTGAGGATTTTAGATACTATTGTTTGAGGC TCAGAAATTCAAGAGATCATCTCTTTTGCACTTAGGGTGATAAAAATCCC TATCGAAATCCCAATGGGTATAGAAATTTTATTGTTCCAAGGTTAAACAA ATCCAGTGGGGATGATTTTGGAATGCACTTTTCAGACATTGACTTTCGAG TGGGGATGAAATCAAAGTTAATTTTGGTGGGGCTGAAATTTCCAGTGGGA ATGGGGTCCCAGTGGGTCTGTGACACGGGTGCTAATGAGTGCTTGAAGTT GTTTCTCCAAAAATTGAAAATAATAGAGGAATTTTTGTGAGCACTAACTT TGGCCAGTAACTAGCTTCGACCTAACTTTTATATTTTTGCGAGAACTGAT TTTGGAAAATGACAGGTCTGATTGTCTACACAAGATCAATAAAAAGGGAA TAGTTAGGAGGCGGGAAAAAATTTGAAAACGGCGGAGTATAAGCAGTGGA GGAGGTGTTTACAGTGTTTGTTCCAAACTCTATCGCCACTTTTTCCCGCG TTTACTGACCTTCTGACGGACAATAGCAATACTTGCATTAAAAACAACAC ACCAAAAATAGTATAAATACTTTGTTAACAGGTTGAAATATATTTAATCA TTTCAATCTTTGAAAATTATCAATAATCTCAATCGTTTATTTTGAATGAT TTCAGATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTTTCGAA GTTGAGAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCAGCGTG TCGTATTGTGTACCCATTGTCGGCAATGTCTGCAGGTGTCCCGATCCTCC TCATGTTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATGCATTA ACTCACAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTCATTTG GGTTTTTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAAGATTC ATGATCAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGGACAAG GTGGTTACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTGTTGCT AAGCACTTTATTCCACTGTCATATCTACCATTTTGTTCGACGTCACACGA AGAAAATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATTGAAT AATAACAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCAAGAC ATCGTCCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAAATGC AACTGAGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAATGAA GAATTGTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTAAAAC TATCCGTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTACGAC ATCGCTTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCGTTTA AAGTACAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCAATCTA CCAACACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCCCTTCA AACAAGAATCTACATGATTTTCATCACTGGTTTGGGTTCAATGCATTGTT TTATCAACGGTATCATATACAGTTTAATGGATTACAAATTTCGCAAAGAA TTCCGTCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAAAAGAA ATATCAACAAAAAAGACAT

Coding sequence (CDS) from alignment at sc0000343_pilon:175728..182846-

>XLOC_016407 ID=XLOC_016407|Name=XLOC_016407|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2764bp|location=Sequence derived from alignment at sc0000343_pilon:175728..182846- (Clytia hemisphaerica_ch_hm2_pilon)
CAACTGAGAAATTTCACATTCAAACTCGCCATTCCAACAAATCAAACACT
TTGCTCGGCCAATGCAACAAATTTGACCTCATCAACAAACTCAAATTTGT
TTCCTAACTGCACGGATAACTTAACCGTCAAATCTACCCCTAACCATCCA
ATCTTAACACCCAACATGGATGCGAAGACCGCTATTGATGCTTTGTTTTG
GATGAAAACAGTTTCAATGGTGTTAGGGATCATCTTCAATATTTTGGTGA
TTGTGGTACGTGGCAACAAATTTGTGAGACAGCGCAGAATCTCTTCCTAC
CACTTCATTATTCTACAGCAACTGAGAAATTTCACATTCAAACTCGCCAT
TCCAACAAATCAAACACTTTGCTCGGCCAATGCAACAAATTTGACCTCAT
CAACAAACTCAAATTTGTTTCCTAACTGCACGGATAACTTAACCGTCAAA
TCTACCCCTAACCATCCAATCTTAACACCCAACATGGATGCGAAGACCGC
TATTGATGCTTTGTTTTGGATGAAAACAGTTTCAATGGTGTTAGGGATCA
TCTTCAATATTTTGGTGATTGTGGTACGTGGCAACAAATTTGTGAGACAG
CGCAGAATCTCTTCCTACCACTTCATTATTCTACAGATCGCGTTGGCAGA
TCTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGAGAAGCATTTGAATA
ACTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTATTGTGTACCCATTG
TCGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATGTTGTTACTCGCAAT
CGAACGTTATCTTGGAGTCATCAATGCATTAACTCACAAACTCCGAACTC
GAAGCATTCTTCTAGTTGGTATATTCATTTGGGTTTTTTCGTTTATTGTA
ATCCTCCCCATTCTCTTTTCACTCAAGATTCATGATCAGTTTGGCGCATG
CACAGAAGAAATGGACCCATTATTGGACAAGGTGGTTACTATTTTCTATT
TGGTTGTATTCATGTTGATCCCACTGTTGCTAAGCACTTTATTCCACTGT
CATATCTACCATTTTGTTCGACGTCACACGAAGAAAATGTCGATGCACGT
GCAAAGTAAAACGCCACCCGGCCAATTGAATAATAACAGGCTTGAAGGAA
ATACTTCCGTCGCGTCCTTGATCACCAAGACATCGTCCGTCGCTGGTGAT
TGCGACACGTACCTTGTGACGGAGAAAATGCAACTGAGTAATAAGCCAAG
CTCCGTTGGAAGTACTTGCGATGAAAATGAAGAATTGTGTCCTCAGTCAA
AGAAATCAGTCTTGAAAATCGGTGGTAAAACTATCCGTAAGATTTGTCAC
AGTGGAACTACCATGTGCTACAAGGTACGACATCGCTTAACTGGAATCCG
TCACCAGCGTAAAGAGAAAACCAGGCGTTTAAAGTACAAATTCTGCTGGC
AATCACTGTCTGTTTCCTTGTTGTCAATCTACCAACACATCTCTGGCACA
CTTGTAATCTTTACTTCAAATTCTCCCTTCAAACAAGAATCTACATGATT
TTCATCACTGGTTTGGGTTCAATGCATTGTTTTATCAACGGTATCATATA
CAGTTTAATGGATTACAAATTTCGCAAAGAATTCCGTCTATTGGTTAAAA
CATTGATCTATGGGAGAGCATACGAAAAGAAATATCAACAAAAAAGACAT
ATCGCGTTGGCAGATCTCATCTACGCATGTCTGCTCTCTTTCGAAGTTGA
GAAGCATTTGAATAACTTTGTGTGGGTGCATTCACTGGCAGCGTGTCGTA
TTGTGTACCCATTGTCGGCAATGTCTGCAGGTGTCCCGATCCTCCTCATG
TTGTTACTCGCAATCGAACGTTATCTTGGAGTCATCAATGCATTAACTCA
CAAACTCCGAACTCGAAGCATTCTTCTAGTTGGTATATTCATTTGGGTTT
TTTCGTTTATTGTAATCCTCCCCATTCTCTTTTCACTCAAGATTCATGAT
CAGTTTGGCGCATGCACAGAAGAAATGGACCCATTATTGGACAAGGTGGT
TACTATTTTCTATTTGGTTGTATTCATGTTGATCCCACTGTTGCTAAGCA
CTTTATTCCACTGTCATATCTACCATTTTGTTCGACGTCACACGAAGAAA
ATGTCGATGCACGTGCAAAGTAAAACGCCACCCGGCCAATTGAATAATAA
CAGGCTTGAAGGAAATACTTCCGTCGCGTCCTTGATCACCAAGACATCGT
CCGTCGCTGGTGATTGCGACACGTACCTTGTGACGGAGAAAATGCAACTG
AGTAATAAGCCAAGCTCCGTTGGAAGTACTTGCGATGAAAATGAAGAATT
GTGTCCTCAGTCAAAGAAATCAGTCTTGAAAATCGGTGGTAAAACTATCC
GTAAGATTTGTCACAGTGGAACTACCATGTGCTACAAGGTACGACATCGC
TTAACTGGAATCCGTCACCAGCGTAAAGAGAAAACCAGGCGTTTAAAGTA
CAAATTCTGCTGGCAATCACTGTCTGTTTCCTTGTTGTCAATCTACCAAC
ACATCTCTGGCACACTTGTAATCTTTACTTCAAATTCTCCCTTCAAACAA
GAATCTACATGATTTTCATCACTGGTTTGGGTTCAATGCATTGTTTTATC
AACGGTATCATATACAGTTTAATGGATTACAAATTTCGCAAAGAATTCCG
TCTATTGGTTAAAACATTGATCTATGGGAGAGCATACGAAAAGAAATATC
AACAAAAAAGACAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_016407XLOC_016407-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000343_pilongenomesc0000343_pilon:175728..182846 -
Properties
Property NameValue
Aaloc1120-1389:271
Aaloc325-1116:1065
Aaloc7-324:7120