XLOC_016334 (mRNA) -

Overview
NameXLOC_016334
Unique NameXLOC_016334
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000316_pilon:30099..40154+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016334 ID=XLOC_016334|Name=XLOC_016334|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10056bp|location=Sequence derived from alignment at sc0000316_pilon:30099..40154+ (Clytia hemisphaerica_ch_hm2_pilon)
AtgaagaaaataatatttttcattcaaattttggtGGTACTTGGCTCAAC CAGTTCGATCAGCGAATTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAA GCAGTCAAAAAGTAAGTTCTTtgaattttactattttcactTAACTCTTT ACcatattcaacctaggcttttaggggcggttcagaactgggggAggggg cttttcctgcaccaccccttaacttttgatctcgtggatctttttggatg aaatttagCACATAAGATCCTTGTctcataaggtaacttttgacaaaaga tttttttgatgacgtcactcatcatgccaaatgtgagcaaaaaccgaaaa tttcctttgtttttataaatagctattgtattctaacaaaggcattagaa aaaagttgcctgagtttaaaatgcttattttatcctaaatattcaataaa atacggtttaaacgatatatttgacattgaaaataaatttgtattggaaa agtgtcaatttttgtgagaccttactgtcagaaatgtcatcatgctcaag gtgtgaaaatatttagttgtcaaatttttttttattttgaagctaaataa aagttaggaatttacagaaaatttcacggcaaaagctctattatttcagg agctattactaatagtttgacctccgaacaagaagagccccccccccata ggccgaatagggttaactGTTACCCTgggtatcagaggttgagtttccAA AGAACTTCAAAGTACCACCAAAGAGATTTTTATTGGGTCTAGGAGCTTTA TGCTACAACACTAAAAGCACATATCAATCTTTCCTAACAATATCCTATTC TTTTTCATTAGAAAACCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCT TGTCGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGACTACCCGGACG AGATGGGGAAGATGGATGCCCGGGACTAGCCGGCAGAGACGGACTACCTG GCGCGACGGGGCCAGAAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCA AATGGAACCAAGGGAGACCAAGGTGTTCCAGGAAAAGGTAAATGTGAAAG ATTCGTATTCTATTGGCCTTAGTATTAGGTGGTAatcgttaaaaaaatga aaggagAACAAAGCTAAAAGAAGAACtaaatttaaactttaaatttgcGT CAGTCTATTTCTgtattaatttaattttttttcctagAGGAGGGGGAGAG GGTTATCAGAAAAGAGTTCGCACACAGAAGGAGGGAGGTACTGTCAAAGC GTACGCAAGCGTTTAAGGGGGAGTGGGGTCGAATTTTACTTACTTTTGAG CGTTACGTACTTTTTGACCAGCccctttttgagttttagaaaccTAATTG ATTGATTAGTAGGTTCTATGAAGGATCTTTAAATTTAACTAAATgtgaat caaaaatttgaatggctaaAGCCTATTAAATTCATTGTATTTCTGAACCC AGTTTTCCGAATTTGGGGTAATTCTAGTCCGACACGCCAGTTGGGATAga aacggtatcacgcgggaaaagtgagcgtcgGAGTTAGGTAAGCATAGAAA GAtattgtcggcggcaagggctgaaagttgatgttaatcagcagcctctc accaacttttgctcgttctcctacgcagctcttATTCCAGCAAACGCctg ccgcctttatgttcccacCCTGTGACACCCTGTGGCATGATTAATCAACT AGTTTGCTAGTTTAGGGTAAATCTCgaacgggaattttatacacgttaTC ATATCATATCAGAGGATATCTTTTTGacttatcgaccgccggaggcggtt tctttcatagtggtacgctcatctcgttttgccttggctcattacttttt ccGAGCTGATTTAtatattcggaattgaataatcgagacatgaaaaatga ctatattgtaatctgttttcaatgaataaactaaaatgtactggagatga catgtagggcgtttaataatgtgcgcgcgctctttcgcgagcgtgatgcg tgatgggaGGCGGttgtttcagtgtggtttagatccacactgtgacctag ttcgTACTACTCTTTGTATAACatatactaggtcacagtgtggatctaaa ccacactgaaacgccCGCCTTCCTTCACGCATCAcgcacgctcgcgaaag agtgCGCGCACATtgttaacgcctacatgtcatctccagtacattttaga ttattcattgaaaacagattacaatatagtcatttttcacgtctcgatta ttcaattacgaataaaagacattcagggaaaaaaaagagaaacacctggg taatctagttaaaaaaacgaaagtaaatggtagacaaagtaatgagccaa ggcaaaacgagattagcgtaccactatgaaaaaaaccgcctccggcggtc gataacaTTCCGTTATACGAAAAGTAATCCAAATTAATTTCTTTATTAGA TGGAAAAAATGGTATCAATGGAGCTCCTGGGGTAAATGGAAAACCAGGCC TTCCAGGCCCTCCTGGAAAAGGTTTGTAAagatttcctttatttttctgt taCATGCATAGCATTTATAGGcaaaaaacagttcttgatcAAGCATCAAA ACCCTTAGATcttagattttcatcgaataagggagcttatcgaataaggg agcgtcgtttatgagagtttctagtTGATggggtttttaaatttcatcga ataagggagcctatcgaatagtagaacgttaGACCATGGCCAGGTAcctc aaaacgtttcactttttttcaaaatgtcggtgaataaacttttgatatct ttcttggtcaatttgaaggtgctgattcggaatttgaatgttaccaagct tgaaaacccgcagtttttacgtaatttgcgattttttgcgtttttaggca aaactGTAAGCCCctgaaaatttatgattttggggggggtcttcaaaatc aaaaaagacctataccacgtgatagagctcttcaaactgagcagaaaaat gtattatatctaagtctcaacttttcttaatcaaaagttatgggcgtttt tgtggtaaaaaaatgctataattttgcataaattatgcaaattgtgggga aattccctgttttcaatcaatttttgaccataaaatcgtctataactttt tatctaaaaaagttgagactttgatataatacatttttttgctcagtttg aagagctctatcacgtggtataggtcttttttgattttgaagacccccca aaaatcacaaattttcagggcttacaattttgcctagaaacgcaaaaaat cgcaaattacgcaaaaactgcgggttttcaagcttggtaacattcaaatt ccgaatcagcaccctcaaattgaccaaggaagatatcaaaagtttattca ccgacattttgaaatttttatttatttttgaaacaataacaatccactgg ccacggcctacgtcaaattagagagcgtcaactcgTCAACTGAATGTATa ttgcagtgccgtagcaactggggggcaagccccccccaataattttttca aaaatagttattttgcaaaatgcaaagtttttcttttttaatttgtcata attgtcttttaagtgcatgttatgagtgcattttcaagcaatctaaagtc tattcacgataagtgtgcactcttttttcttttacctataacttttgaag gaattcttcaatcttcataaatttggtatcgttggagagatatttgtgag tggaacaatttaaaatcaaaaagtcttttaaaaaattctaaaaatgaaga tgaaaatgaagaagaaaaaaatgaagatcttgtagaaaagtgctataacT TTCATTTTCACTGGAGAGATTCTTTGATCTTAGGAGGTCATCACTGTGAA GAAATTTCACTGGAATATTTATTCAATATAAAGTTATGATACAAAGTTAA TAAGTGATTGACCCCAAAAAACAGCGGAAAACAGCAGAAAACAGGGTTTT TAGACGTTAATCAGCTCATAACTTTGTTTGATATCTTTTGACTGAATTAT TATTTTTTAGAATTTTTTTCACAGTGATGACGTTCGATGATCAAGGATTC ATTTAAGTGAAAATGATGgttatagcacttttctacaagatcttcatttt tttcttcttcattttcatcttcatttttagaatttttttaaagacttttt gattttaaattgttccactcacaaatatctctccaacaataccaaattta tgaagattgaagaattccttcaaaagttataggtaaaagaaaaaagagtg cacacttatcgtgaacagactttagagctcaaattttcaaaatttccccc ctggttggccctcgcggtgtcactaaacttcagcccccccaatatgaaaa tgctttcTACGGCACTGTAGTAGAAAAGTAAACTAGACGATGAAATCGAC ACCATTGGAACGATAATAAACGCAGGGAAATATGCATGCGTGCAGTTAAC ATCCATTACGGTAGTTTACGGAAAAATCGGCTGTAGAGTTTAGCCCTGGT GTAGATGATAGGACTGTCTaagtttaagggctctgaccatagtcggaaaa ttgattttagtatttgaacataaaagttatgttttaggttcttttaaaca cttttaacaaagaattgcctttataaattgctttttaatcaaatcccttc agagtaattaagaatttaattgcagaaATGACGCTATGAACTTTAACTAG CTAATAGCCAAGGCTATGATGCGCCCGTTGCAATGTTTTTCTGGGAAACT GACGTCGGTTAGTGATAACCAAGGAAACAAAAAGCAGGAGGCCCAAATAA TTACAGTTTCTGTAAACCATTTCAATGACATGTTAAATGAGTCAGAAAGT TGcaataaaatttgcttttttaagttttatttataagaactgcaaggaaa atgtgtaaaaacaaaacaatatatagttttcttaaaaatcacacAAGAAG TTTTCTTTGCCACTCCTTTATGGTccttgtacacaaaaaataaatttagc agCTTCCAAGTgtagaacacctaaaatcaatatacaacaacagaacaaca aaaatcaatattttttttttaaacataattcACTCAAAGTCATCTAGAAG AAATTTAGTTCagtaaaacataaataaaatataaaaaaaagataaaatcg attATCGATTTCAATCAATGAGTAATCTATAAAATATTGATTGCATTGAT ACATAGTTTATTGAAACAATTGTGAGTATATATTAATTATCTATCGATTG TGTTAATGTATCAATTAGTTATTAAGTCAGTAAAAATCAATAGGTAATCG ATGTAATGTACTTAAATTGATACTGATCGACTGCAATCGATATTTAATCa taattgattatttatcaatCATAATCAATAATCGCACCAtctggattttt gtccataatttgttgaaaaatactttggtcttacttaaatcaaattccag taacactttatcataataaatgatctaaaagttcatcaaaCCACCCATTG TCTTCAATAGCAAATCGCAGTGGTGAAAAACTCAAACCCATGCATCAATC GCAATCGCAATTAATAACCACAAGAACTGgattttgtccataatttgttg aaaaatgcttTGGTCTTACTTAATCAAATTCCAGTAACACTTTATCATAT AATAAATGATCCaaaagttcatcaaatcatCCATCGTCTTCAATATCAAA TCGCAGTTTGGTGAATAACTCCAAGGcgacaatcaaaaatatgttccgtt cttGGCAGACAAAAATTCCTAGTCAGACGAGTCAGAAAATTGTCTGAATT TTTCATCAAGCGAACGAATAAatactttgaaaccattttccaaaaaacct gacagttacatcaatatgccttcttacctgtctttaaaaatataaataaa agtaatcacggaaaaggacgcgaaaaaaaaagacataagtgtgagaacag agtaatcaaactcgttagaaaaagtaccattagaagtcataaaaaatcaa cctgaataaatgcaatcgaaatcccagagaacttcataattccccaaaca acattacattactatgtcaaactcccattacataaattttacaattacgt cagagtagactacgctcgccaccgaagaggtttatttggaaagggtaatt acattttattgttcgcttcttttttaaagattggccgggttggaaaagta tgaatttctttgtacatattttacctaccccaaatatttaggaggctgag ttttaaacaaatggtcaagttgaaacgaacgataaatgtatcaaggtctg ttttatttaccccctggtgacttaacaaaagagacttaactcgatgttac aatccaattactGGAAGTTtttctcggcctttttataatgagcgagacat acgttctctgattacgcaattttcatattgacattttcgaggcattttga tgtaactgcctgactaaatttactaccgaccgaccgactcaattttaaga agatttttgacgcgaacggaacatattttcgaTTGCCGCCCAAACCATGC ATCAATCAATCGCAATCACAATAATTAATAATCGCAACgtctggattttt gtccataatttgttgaaaaatactttggtcttaCTTAATCAAATCCCAGT AACACTTTATGATAATAaatgatctaaaagttcatcaaatcatCTATCGC ATCATCGTCTTAAATATCAAATCGCAGCAGTGGTGAAAAAACTCCAATGC ATCAATTGCAAATCGATAATCGCACCgtctggatttttgtccataatttg ttgaaagatactTTCAACTTACTTAATGAAATTCCAGTATACGATCTAAA AGTTCATCGAATATTGTTCATCACATTATCGTCTTCAATCGATTTGCAGT GAAAGCCGCCATAATTTGTTGGTGAAAATTACTtctctcttcttcttcat tacATTTACATAGGAAATGTATACGTTAGGATATTTCATCCAATAATCCA TCCATAACTTTCTCCAAGCCCAacaggaaaatatgttttttattgcaatc aacCATCGCATCATCATGGAATGTCATGGAATCATAAtaacaaacaaacc aaaacaaagcaaaaaataagtctcacttttggtaaaaaatagttcataaa aatcaacgaaaaCTAGAGCAAATAAagtctttacacgatgcaaaaAGGCA TGTCCCTGATGCAAGAATTAATTTGCCAAGCTAGAGCTAATTCAAAAAGA TGAAACTTGCAATGCCAGCATGCAAATGATCAAAAACACTATCGCTTcgt aatattatgataatcgtttattcatttgttctttagttctgtaataattt ttcagtttcttctaggttccccattgtattagagaaatctattttttttt ttgtaaggggttatcctgctgtgttgcagcgaaaatatattcaattcaaa ttcaattcaattcaattcggTAGCCATCTTGAATAACCTTTTAATGaatc cgatcggaagaaagataggaaatcggggaaatactACGAAAAGTAGTTTA ATCGAGCAAGGCTCTTGTCTCTGTTAACATTAACATGCgtgaaaaaaaca caaaataaaaaatgaatgatcGAGAACAAACATGAATAATCGAGCCGGAA AACTGAATCGTGAGATTTTCCCTAGGTACTCCTCATTAAGGCGCCCTTGA CGGGCgcaaaaagacgttaataatatgttgcatcaccttcttttataaaa agtgctaagttttaatgggtaattaacctttttgtttcaaaatttcttta cactgtctgcaaagaattgaactattttaaattttgcggaaaatttttct aaaaagacgtgtcaaaagttatgactgttttttttaagcaaaatccagat gaaaaattgatgaaaagccactattttgaagatttcgagacaaagaagca tttacaaaaattttccgcaaaattttttattgttcagtaaaagatacacc atctactgccaaaaatttttcaaaatgttttttcgtcgccgaaactaagc tcttcaaagttgaaatactcttcctcgcaaaagtcttcattttcttcttc atcaaattttttcattgcaatttttgaattttcagattcaggaatagttt gtctaacagaaaatgtataccatgctatagttttgttggttacatcagtc agaaaacacattttaaacacggcaattatgaaaaattcactaaactttcg caaatcgtTGTacacataaaaatgaaatattaacaTCAGCATAAAAGTGA CAAACTTATAATAAGAAGCCCCCAGCGGTTGGTTTCCaggagcagccacc ggctaggaagtatgaaatatctgttcttgaggtccatttctcctggaaaa aactatctgttctgtatcctgggctttcctggattatatcatctgttctg ggaaaaaaataagactcctcgaaaatgtatatctgttctctagaaatatt GTGTTCCTAGAAAAATATGACAGCTATTctctaaaaaagttaaaatgctt ttagaaaatgagaccttttaagaaaattatgaagctccctggaaaaaaat ctggcatctgTCTGTGTTTTTCACAGtttagctcctggattttttgaaca gattgtcCGCTAGAAAAATTATATgtctttttccttaaaatgtgctcctg gatttcAAGAACAGATGTTTTTaaggcgacccctggattttacctgggtg ttttgaggaaagactctcctagatttatccataaaatttactcttctgga aaaaaagaacagatatttcaaaaaagtccgccggcggctgctcttggGTT TCGTGGTCCGTTATGAcatgaatttttgaaacataTGACGCAATGGCGTG AAATTAAAAAGCGGCGTGGTCGTGTAATAGAGATCTTTAAGGTGTGAATT CTGAGGCCAATAGCTGTTTCTATTTTTGTGATTTCAGATGGTTCAATTGG TGGCAGAAACTTTAAACAATGTGCCTGGGATTTTACATCATCTAAAGATT CTGGCTTGCTTAAGGTATGGCTTTTTTCAATACGTTAAAAACTTTCAAGT ATTGACAGTAACCATAGCAGAGCATTTAGTGCAATATCACCTTATTGCGA ATCCTCTGAAAATACCCAGCTTTGGGGCGTACCAGTTTGTTGGTACGTGT CGGTATTCACCTTTTTTGTGTCGGTATTTTGGTTTTTGAGATGATTTTCG GTGATGGAGAATGTGAAATTTTCACTGATACGTTAATTTTGCTTAAACGT CGGAGAAACGGTGCTAAATAAAGGACTATTTCTAAGAAATTCGTCTTATT CTCTTATCGCATATTAGaactaaaaaaaatatgaaaatatgtcgGTGTCA GTATTTCGTAAAAAGATGTGCCGGTATTGCGgtgatttattttgataaat ttctttgaaaacaacaagaacgacaaaaaaagcaaaatttgaaagcaaaa ctaaagaaaatttttaccgTGGTAGAATAGTCATGGTAAAGCAGgcatta ttcaatggctgtttttgcctacaggtttataataattacttataacttct ttttcaatcttttaaaTGAACAGGCTTGCAttttcacaaaatcaaaaacc gACTCATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAAGGC TAGAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTC CTCACCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCTGAG TATATCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGGCAT TGTGAGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACATTG GTGATGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAAGAG CTCTaa

Coding sequence (CDS) from alignment at sc0000316_pilon:30099..40154+

>XLOC_016334 ID=XLOC_016334|Name=XLOC_016334|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000316_pilon:30099..40154+ (Clytia hemisphaerica_ch_hm2_pilon)
AtgaagaaaataatatttttcattcaaattttggtGGTACTTGGCTCAAC
CAGTTCGATCAGCGAATTTGGAAATGAAGAAGCAGTTTTAGACGCGAAAA
GCAGTCAAAAAAtgaagaaaataatatttttcattcaaattttggtGGTA
CTTGGCTCAACCAGTTCGATCAGCGAATTTGGAAATGAAGAAGCAGTTTT
AGACGCGAAAAGCAGTCAAAAAAAAACCCTCGCTGAATCGGATTCTTCCA
CTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGA
CTACCCGGACGAGATGGGGAAGATGGATGCCCGGGACTAGCCGGCAGAGA
CGGACTACCTGGCGCGACGGGGCCAGAAGGTCCCCAAGGTATTCAAGGCC
GTCCGGGGTCAAATGGAACCAAGGGAGACCAAGGTGTTCCAGGAAAAGAA
AACCCTCGCTGAATCGGATTCTTCCACTTGTCAGCCTTGTCGAAAGGGTC
GAGACGGTCGTGATGGCTTGAACGGACTACCCGGACGAGATGGGGAAGAT
GGATGCCCGGGACTAGCCGGCAGAGACGGACTACCTGGCGCGACGGGGCC
AGAAGGTCCCCAAGGTATTCAAGGCCGTCCGGGGTCAAATGGAACCAAGG
GAGACCAAGGTGTTCCAGGAAAAGATGGAAAAAATGGTATCAATGGAGCT
CCTGGGGTAAATGGAAAACCAGGCCTTCCAGGCCCTCCTGGAAAAGATGG
AAAAAATGGTATCAATGGAGCTCCTGGGGTAAATGGAAAACCAGGCCTTC
CAGGCCCTCCTGGAAAAGATGGTTCAATTGGTGGCAGAAACTTTAAACAA
TGTGCCTGGGATTTTACATCATCTAAAGATTCTGGCTTGCTTAAGATGGT
TCAATTGGTGGCAGAAACTTTAAACAATGTGCCTGGGATTTTACATCATC
TAAAGATTCTGGCTTGCTTAAGGCTTGCAttttcacaaaatcaaaaaccg
ACTCATACTTAATGGTGACAATCTCTTCAAATGTATATCAAGGAAAGGCT
AGAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCC
TCACCCAATAGACCATGTGTTTTACAGGGGCTACAAGGGGCAATCTGAGT
ATATCCCCTTCACAATGAATGGTGTTTGCAAAATCAACAAATCAGGCATT
GTGAGTGTTGGATTCAACGTTGGGAAATGTAAAGCTATTACGAACATTGG
TGATGCGTACACAGGATTCAGATCAGTGACACGCATTGTCATCGAAGAGC
TCTaaGCTTGCAttttcacaaaatcaaaaaccgACTCATACTTAATGGTG
ACAATCTCTTCAAATGTATATCAAGGAAAGGCTAGAGCATGCAGTCGATG
GTTTGTCACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGACCATG
TGTTTTACAGGGGCTACAAGGGGCAATCTGAGTATATCCCCTTCACAATG
AATGGTGTTTGCAAAATCAACAAATCAGGCATTGTGAGTGTTGGATTCAA
CGTTGGGAAATGTAAAGCTATTACGAACATTGGTGATGCGTACACAGGAT
TCAGATCAGTGACACGCATTGTCATCGAAGAGCTCTaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_016334XLOC_016334-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000316_pilongenomesc0000316_pilon:30099..40154 +
Properties
Property NameValue
Aaloc487-819:9724
Aaloc412-486:9090
Aaloc340-408:2502
Aaloc112-336:862
Aaloc1-111:1