|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000124_pilon:173914..183236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_015554 ID=XLOC_015554|Name=XLOC_015554|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9323bp|location=Sequence derived from alignment at sc0000124_pilon:173914..183236+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCAAGAACGTTCAggactgaaaaaaagaagaaagtaggTATCGTATTT
TTCATATTTAACGTTTTCTTGATATTAGATTTTGTTCATTTAGCGATTTA
GCATTTCTTGAAGAAGAATCACATATTCGTGAATTTTTCCCCTGTTCATT
GAATAGAAGATAGCATGTAACAGatacacgaatcctatgaaataggctga
TGATTTTTCTTCCAAGGAGTAAATTGAAAGCTATACGTAGACTTGTTgtc
atttttgaagaaaaaccaTTTACATagtataacacccctgtctcacaacc
ccggtggaacttttttcctcagtggggacaATTTGTATTGAAATCTCAAT
CAGGATAGAAATTCTAGTGCTCCAAGGCCAGTGGGAgcggttttggagtg
caatttttaagcaCTGAGTTTTGAGCAGGGATGAATTAAAACCCAATTTC
CGAGTGGGGCTGAgattccagggtattCCACTGCAAAATTTTTGTCTCAT
TTTCTAGTGGGACAGAGGGGTGTCCTATATTTCAGAAACGCGGATAAAAA
AGTAATCTGATTCagatatacacattttttatgagaacatccaaaacttt
tgtctgtacacaaacccaatatctacggctaatttcaaaattcattgccg
tagagaactacgctacgataatcgtgagatacactctggtacagagtacc
aAAACTTACGATGCCTTCGGTTTCTTAGCtttctgagttttaagcctaga
aatcttttttttattttcaccatattttttgagtatttatgtccattttg
tgttttAGAGttcgcgaagccttaaaatgttcgtaacttgttcttaatat
ttggccgttgaagccttatgttcttatatagcttgttcttataaaaacct
gTACCAAGCCTCAGATCTGTAAGGTTATGAACAAGGTTATAAATTGCGTG
TGTGAATTCTGAGCTTATAAAATCTTTTCACCATGACTGAAAACAAGAAA
TTTACTGAAAAGCGGCCCCTGCCCTGTTCGTTATTGTTCGCTTTTTCAGC
CATGGTGGAAGGTCAGTGCAGTGCAGTACATGCTCGCTTTTTTAAAGGGT
GGGGTTGGCCTTCACTAATGTACAtctctctcaaaaacaaattcatGGAT
GGGATTGGTTGTTACAGATAAAAATTTTCGGCTTTCGATGTTTGTTTGTG
AAAGGAGTCCCAAgagaaggaagaaaaaaatcatcgcGATATGACAAAGG
AGAAGAAAGTTTGCATACCATTATATCTTTTCACACATTTTGGTGAAAAA
GAAACTATAATATTTTCTACTGATGCCATCTAATTTCTCGCAAAATCATG
TTTTGTTTGACTCAGCTGCCAGACGCTAGTTTGCAAGGTTGCATATCCAT
GAcgaatttaaaagtaatttttcgctagttttctcaattttttcgaTCAC
CAAATTTTAATGAACTGCGTTTTGATTAGTCAAGGGTGAAAAATTATTGC
TTCAATTTTAACCAGAACACTCAGAAGTTTCAGAGTCTACAAAGAGTATT
GATTACTCTTTTCAATCTCTGGTATAACATGATTTCTAATCATGTTTTTT
AATCAGCTACACCCAGTTTCGATATCTCATCATCATTCAAGGTGGAGGCT
CTTTAGTTCAGCAGGCGGAAGACATCTCATTATGTAACGTGAGCTGTTTT
TAAACCAAACTTGTTAATTTCTATACTAATTTGTTGATTGATGATTAAAA
TTGAGGAGATAATCAGTGTTGGTGAGATTTTACACCGAAATGTTTAGTTG
AGACAAAAACAAGGAAACGGTTTAACTTCATTCGAATATTAAACTGTTTT
AATTTGTCCATAGGCACTTTCCTCGAGGAAATGACACTGGCATAAAAAGT
GATGCAACCTTTCTCCATGCAAAATGTGTGAAAAGATATATTGATATGCA
AATTTTCTCCCCCTTTATCATATCGCGATGATTTTTTCTATCTTCTCCTG
GGACTCCTTTCACAAACAAACATCGACAGCCGAAAGTGTTCATCTGCATC
GACGATCCCCTCCAtgtgattttgtttttaaagaaaagtagTGAATTACT
CTTGGCTAAAGCATGGGGAGCTTTACGGTAGTATGTAGATTTGCAGAGAA
CTGTCACAATCAAGGGACTTTAATAATCTTTTATTTAAGTCTCTTGTCAC
AACTGAGATAGAATTACAAAGTGAAGAAAGtCTCCTGGGTTTTTTTTTTC
ACACAAGACGTAAGATGTGGTTGAATATAGCAGATTTGCAAATAAATTTA
TTGCAACGAATGTCGGTGTTTAGGAATTGCAAGGCAGAGAGGATTTTTAT
TGATTCTGTTTCGCTGTTAGTATAGTACACGTTTCCTTTTTTGTTGGCTT
TTTGTTTAGTTTTTGGAGAAGAAGAGCGGGCGCGCCATTTGTTGGTTTTC
TGTTTCTCGTGTTTGGCAGAATGCGCGCTCATTTAaagttcttttgtttc
aaatttatgCCGAATATCTTTTTCGCGTTAATATGTTAGTTATTGATCGA
TTAACGGTTATGCTATTATGCTGCACATCAGCCGTAAACTTTACCTCGCT
GAGCGCCATTTTGTAGGCTGCTTTGCGTTGCAGTTGACAACAAAAAGCGA
TTCTCCAATTCTCTTTGTTTTGTCAAGATTCTAAACTGATTATTTGGTgc
tttttgtcttttgaactattctactacacgTTTtttttttataaggaacc
ttaactttgctctgagcctggagttccttatttttacagagaatttcagt
ctcaaagttccttatcgagttccttactacataggaaattttgaactttt
tgccccttgaaagatcaaatttggtcaaattagtcccAataaggtacaTt
attttcaaatccacttattctcagcctgagcagttccttaacaattcctt
atttttttaaccattttcagcctcgagttccttataaacgtgttccttat
aaaaaaaaaaaacgtgtagtctcaATGTGAAAGATTGGGGATTGGATTTG
AATAACGTCATATTTTGGTTGTAAAGGttatttttgttcgattttcgCGC
CTTTGCGAGTTGACGTTCTTTTACTATACATCAAAGTCGTAAACCAATTA
CAAAAGTTTACGTGCGGAGACAAAGGGTAACTTTTCTCACGACCATCCCT
CATATGCTGCAcaagtcaaattttcaaaagaaaaataatttttacaaaag
tttgTAACTTTTCTTGGTATAATTTACAAACTTTATAAATGTTGttcaca
aaaaaacaaatttcataacaTGAAAAATACTGCCTgcagaaaattttcat
tatttgcaaaatttgcTCATTTCGGAAAAATTCCTGTTTCGACAAGCAAA
GTAAGGCCACCTGAATCTTTTGTAAACCCTAAAGGTTTGGACGTCACATG
GCTGCCATTTTGTAATGAcgtcagtcctaaaaaaaagaaaaacaaaaagc
tcACACTGCTTCACATTTTCCCATGGCAACTggctttatttataagaatt
cgAATAGTTGGCAAACGGAGCAAGACCCTCACCGCACCCAAATATATACA
AATCTAAAATCCCATTGACCTTAATAAATGCATTTCCCTTTATTAATCCA
TGCTACAAGCCAGTCAAAGATTTTATCTTTTCATGATCTTTTAAATCAGT
ACTTTTTTGTGGATGTCGAGGAATCGATatttatatgttcttataaaaaa
tacttttgttCCAACTTGTAGTCTTGGCCCAGGCGTGTTGGAAAGCTGAC
ACTAGTCGCTACGTAAAGTTTGTTTGAATTGTGGGGGAGGTAGGTAAACA
ATACTTCAGTGGGCGAAGAATTCATTTTACGAAATTTTGGAAGAAATAAA
TTGTTAAACAAATATGTTACCttcaaaatttagtttaaactaacttgttt
ttgcattttttcttGAGCTGGCGTAACGACTAAAATTTGCGAAATGTGAC
GCATGACGTATATAAAAGGTTGGTTAAATGTAcaaattcttttgttattg
TTCAAGTTCTTCAGAAAGGCCTTCAATATGGCCCAGTCAGGACTGGGGAC
TAGATTTTGCTTAGGTAATCTTCGAGGCTTTTActatttgtaaaaagttt
tgttttttacacTTAGGTCCTCACATTAGTAAAATGTGAAAAGTATTTAG
TAAAGCAATGCTGAAATTTGGTCACGATAAGTGTAAGTGTCGAGTCACGC
AAAGATGTTTTCTCTTGCACATGTCTGAGATTTCTATTTGCTGGATTGGA
CTgtatgaaaattaattttgaatttttgtgcaTGCAAAATAGTAATTTTT
GAGAGCCTTGGTCATACCAATGTAGACGTAGTTGTATTTCGACTGAATTC
TAGGCCTGGGTTCGAAAGTTTGTATGGGTCCTTCTTGGTTTAGTAGGCAA
GGGTATCATGATTTGTTTGCAACGAGGCAGGAGTGTCTTGAGTTGTCTTa
aaagagacaggggtgtcatgGATTGTTCTTTAGAGAGACAGGAGTGTCAT
AAATTGTTTTGCAGTCAGTCAGGGGTGTCATAATTTGTTTGtaacgagac
aggggtgtcatgGGTTGTTTACAGTATGGAGGTAAGAGTGTCACGATTTG
TTttactgtgagacaggggtatcaTGAATTGTTCTTTAGAGAGACAGGGA
TGTCATAATTTGTTTCGCAGTCAGGCAGGGGTGTCCAGAATTATCTAATG
TGAGGTACAGATGTCATTAATTGCTTACAGTGAGTCAAAATGATTTGTTT
TACtgcgacacaggggtgtcttgaatttttttaagtgagGAGTGTCGTAA
TTTGTTTTGCAGTCAGGCAGGGATGTAATGAATTATTTACAGTAAGGCAT
GGGAGTCATGGATTGTTTTATCAGGAAGTGTTGGTGTGTGATTACACATC
GTTGCATAGCTGGCCAAGCTCAATTTGTGTCTTCAGAAGGCGGAAGGCGT
TTTCTTgtaagaaaaactttttgtaaGAACAGTAGTTTCTCAGATTTTGA
ATGCGGAATAATTTGAGAGATTTTGTGTAAATTTtacatatttcattttt
catttagtgTACCTACTTCTGAGTATATTTTGAAGTATCGTGTTCTCTAA
GggttttttgagaatccattTCTTCGAAAACCATCTTATATTATTTGAAT
GTGCTTATCTACAAGATACATAGACACTATCAGAAGTGTGTAGGCTGTAG
TGATATTAAAAATGATCGGTCGAGTTGATTACACAATCACATATTATAAC
TGTCACATTTAAATTTGATTATAAATGGTTTGAGTATATTGTATCATCCT
TAATGAAGATGTTTATACTGATTTCAATCTATGTGTTGATGAAAGTTCAA
TTTTCAATCATCAGTTGGCAGTTGACATGTCCAGGTGGCTGGCTCATGTA
ACTTTGTTTATTATTGACGATTTTGTGTCttgttttcatattttaatTCT
TGATGGTATTGTGATGTGATCGCTATCGATGTCTTTCAGTCTTTTTTATA
CTGAAGCATATAGCTGAAAGCCGAGGTGCGAATGAGAGACCAGCAAAAGA
TACAGAGGGTTTTCACTGTAAGGAATCGCTATAGaaaaaaaGCGCCAAAT
CTCGGTGACGCAATGTTGTTTGGAGCGGCTGCCTTTGTTCCGTTTATCCG
CCTTTCTGTATGGCGTAACTTCTCTCATGTTTCGGTTAAGGGtgctttct
tttatattttccctATCGGCTGCGCTTTTTCTAATGTTTTTGGGCTTTAG
GGCTTTatcagttttttaaagtttaaatgGATGGTAAAGGAAGATAAGCC
TTTGATGTATCCAATAGTTTgtttaaatcttttaaatttttcaacaatGT
TTCCTTTATTCTTTTACCCTTTGGCGAAGTTGCCGCAACAAAGATCTTCg
cattttttgaatatctttcttttcaaattttacaaaattcttcattttaa
agcttttttctatcatttgtgtaaaatttgatcaaatttttcatgtTATA
CAAACTTCATCTATGTACTGTTTGACCAGTTGCAAATCAACTTTAGATCT
GATCGCAGCAATGTcagatattttttcatgaatatttttaCAGTAATCCT
TATAAATCTGGGTTTAATAGGATTTTCGTACGCGCGCCTTTGCACGCGTT
GCTACGAGATCTAAAGTTGAAAAGTTCGAGCTAAAGTGAAGAATTTTTCc
gttatttcattttttgtcgTGTTATTTGCATATTTGCTAACGTTATGAAA
GCCTCATGAGAAAACAATGAAGAAGAATAAGAAatttcgtttgtggaaaa
tttttgttttctttttacattatgaagatttcttttcaacattttttgat
gGGAATATTTATTAACTCTATGTCTGGTTGTTATGTTCGCAGTTTCCAAA
CttttttttGCAACTGATTCTCTGTATGGgggtgaaattttgaaaattct
aaaccCGTAATCATAGAGAAAGATCATTGCACTTCATCTGAGCTCATGCT
CTGTATAACtctcttctgattggttctCACACGACctctattttcatttt
ccaaccACTCATAATAgctcattttcaaaacaactaaTCTGattggataa
ttttttttgaactcGCCCTCTGATTGGCTggcttttattaattttctttt
gattctaTTGTTAAATCAGCTGATCAGttttttttGTTCCCTgtgatttt
tcttataagctgtttaaaatttcattttcgttgtgcttttgttttgatct
ttgaAATGAAAAGAACCCACCATTTCCATCAGACGCTTGTAGGAAAGGTG
CTTCTTCAAATAAGTTGCTGGACAACTTATGAGAACCAATCAAAAGTAGA
GCTGGCTTTACTTTTATGATCCTACTTAACCAtccttcattttgttttga
ttcaaaaGCATcaacagaaacaataacaacaacaacaacaacaacaaaat
gccTTGCTCATGTCGACAACAACAACGAAGAGCCAGAATCACATCTACAT
CAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAATCAAGCCTTCCC
GAAGAATTCGATTGCTCTTTCTCAAGTGATGAcgtattttatcaaaacaa
aacaatgacTTTACAAATGGGACGTTTATTAGGGTCCGGTGGATTCGGCT
CTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCTGTCAAGAAACTA
CACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATCTTTCCACGCTGA
ACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTCGAGTTCTCGCCA
CCACTATGCATTCAAACATCTTCCAATCGTCGTCAGATCGTTTTGTTATT
ATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATTAAACGATGAAAA
AATACGAATCACTCGATACGATCGATTACGATACGCAACGGACATTGCAA
ATGCATTGCATTATATTCATAAATTGAACATTGTTCATTTGGACATAAAA
CCAGCCAATATCATCGTAACCATTAAGAACACTTGTAAACTTGGTGATTT
TGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGATCTCCCACAACTC
CCACAAACTCTAGTTTGACAGGAACATTGGCCTACACAAGTCCTGAACTA
CTTAAAGGTATGTTAGTAATTCATAcgtctttttctgtttttttttattc
tagcAAGCATGATATGTCTTTGATCATCATTACTCTGATTCTAacctttt
tgtaaaatttgatattcttataaaaaacagatATAAACTATCAGTTTTCG
GGCTCAACATTTAGAAGGGGATTAATCAACAAAAGGTTTTACGAATCTTT
ATCTAGCCAAATTAATCTATACAAAGCTTTCTGTGCAATGTGTAGTTTGA
TGAGCAATAAAGCCTCTTGCAGCTAGTTGGGGCGGCTGCAAAATTCTCAG
TCTTCAAAAGTTCTTTactttttcaatcaaaagatttAGTAGCTCAGCTG
GTTTTCAcaatgaaatttcaaacttttcacaaaagttttttaactcaaac
aagaaaaagaatttgaattgattttatttttctaaaaaatattttactag
tTGGTAATAAAATTTTCGGGGACTcctcaaatatcaaaataacgaaataa
tatcaaaacaatTCGCTGTttgccttttttcaaaaatatcttttaaagcT
ACCATGTTAATATGTATTCAAATAGGGTTTGAAGATTTTCTAAACTGTAT
GGCACATAGAGCTTTGTTTTGTCTTTTCGAAATCACATAGAGCTGTTCAT
GGATTGAGAAATCTTCTTTTTTGCGGTATCTaacgaaagagaaaatttgC
GAAAAGAAAACAATCATAGAAACTTGTTGATTGTCTCCTTAACGAACGAA
ATTACATAGCTTCATTTTGCATCATCATTAATTGTGCGaaaaaaaCAACT
CATTGAAAATCAAGCTAATTACACTTGTTATGATATAATCATGTTTGTTG
ttatatgaaaatttaaccaCAATTGAAACCTATTACAAcatattacacca
aatattatCACATACTATCACTTCTCCCTTTTCCACGTTATATCACAAAA
ATCCTACTCAATTCAATATTTGGAtacatttatatatttttttgacaaCT
CCACCCAATTTTTATACCTTCCCATGAGAAATGTTGCTATTTTTAACTCA
GCAGAATTCAAcaatttacaaaatgaatcCAATTTTCACAACGCGTTTTA
CATATTTTTGTATGATACATAATAAGTCAGCCTAAAAAGTACCCTACAGG
CTATCTTCCAATATGTTATCACAATGAATAGCTGAAATAGAAAACTATTG
TATAGGGGAGTGTATTTCCTTTCAGCAGTGGCTGAATAGATAACTTATCT
TCAGTTACCACAACAATGAccaatttaattcaattttcaattgttttttc
cTTCAGGTGAATTTCCAACCAGCAAAGCTGACATGTACTCTTACGCCATT
TGTTTATGGCAACTACTATCACGTGAAAAACCTTACGGTAACGAAAACAT
GTATGTCGTCATCTTTGGCGTTGTGTCTTACAAATTACGCCCAAAAATCA
CGCCCAAACAACAAAGAGACAATAAAGCTTACATTAATTTGATTCGCTCT
CTTTGGGCAGCTGATCCAGAGCAACGCCCTTCCGCAAAGCAAGTCATGAT
GAAATTACGTAATCTGCGAAAACAACCAATTAAAACTGTCAGTAtcagaa
acaaagaaagatgGCGCATTTGA Coding sequence (CDS) from alignment at sc0000124_pilon:173914..183236+ >XLOC_015554 ID=XLOC_015554|Name=XLOC_015554|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2202bp|location=Sequence derived from alignment at sc0000124_pilon:173914..183236+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCAAGAACGTTCAggactgaaaaaaagaagaaaAACCAAGAACGTTCA
ggactgaaaaaaagaagaaaCATcaacagaaacaataacaacaacaacaa
caacaacaaaatgccTTGCTCATGTCGACAACAACAACGAAGAGCCAGAA
TCACATCTACATCAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAA
TCAAGCCTTCCCGAAGAATTCGATTGCTCTTTCTCAAGTGATGAcgtatt
ttatcaaaacaaaacaatgacTTTACAAATGGGACGTTTATTAGGGTCCG
GTGGATTCGGCTCTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCT
GTCAAGAAACTACACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATC
TTTCCACGCTGAACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTC
GAGTTCTCGCCACCACTATGCATTCAAACATCTTCCAATCGTCGTCAGAT
CGTTTTGTTATTATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATT
AAACGATGAAAAAATACGAATCACTCGATACGATCGATTACGATACGCAA
CGGACATTGCAAATGCATTGCATTATATTCATAAATTGAACATTGTTCAT
TTGGACATAAAACCAGCCAATATCATCGTAACCATTAAGAACACTTGTAA
ACTTGGTGATTTTGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGAT
CTCCCACAACTCCCACAAACTCTAGTTTGACAGGAACATTGGCCTACACA
AGTCCTGAACTACTTAAAGCATcaacagaaacaataacaacaacaacaac
aacaacaaaatgccTTGCTCATGTCGACAACAACAACGAAGAGCCAGAAT
CACATCTACATCAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAAT
CAAGCCTTCCCGAAGAATTCGATTGCTCTTTCTCAAGTGATGAcgtattt
tatcaaaacaaaacaatgacTTTACAAATGGGACGTTTATTAGGGTCCGG
TGGATTCGGCTCTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCTG
TCAAGAAACTACACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATCT
TTCCACGCTGAACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTCG
AGTTCTCGCCACCACTATGCATTCAAACATCTTCCAATCGTCGTCAGATC
GTTTTGTTATTATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATTA
AACGATGAAAAAATACGAATCACTCGATACGATCGATTACGATACGCAAC
GGACATTGCAAATGCATTGCATTATATTCATAAATTGAACATTGTTCATT
TGGACATAAAACCAGCCAATATCATCGTAACCATTAAGAACACTTGTAAA
CTTGGTGATTTTGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGATC
TCCCACAACTCCCACAAACTCTAGTTTGACAGGAACATTGGCCTACACAA
GTCCTGAACTACTTAAAGGTGAATTTCCAACCAGCAAAGCTGACATGTAC
TCTTACGCCATTTGTTTATGGCAACTACTATCACGTGAAAAACCTTACGG
TAACGAAAACATGTATGTCGTCATCTTTGGCGTTGTGTCTTACAAATTAC
GCCCAAAAATCACGCCCAAACAACAAAGAGACAATAAAGCTTACATTAAT
TTGATTCGCTCTCTTTGGGCAGCTGATCCAGAGCAACGCCCTTCCGCAAA
GCAAGTCATGATGAAATTACGTAATCTGCGAAAACAACCAATTAAAACTG
TCAGTAtcagaaacaaagaaagatgGCGCATTTGAGTGAATTTCCAACCA
GCAAAGCTGACATGTACTCTTACGCCATTTGTTTATGGCAACTACTATCA
CGTGAAAAACCTTACGGTAACGAAAACATGTATGTCGTCATCTTTGGCGT
TGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAACAACAAAGAGACA
ATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGCAGCTGATCCAGAG
CAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTACGTAATCTGCGAAA
ACAACCAATTAAAACTGTCAGTAtcagaaacaaagaaagatgGCGCATTT
GA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124_pilon | genome | sc0000124_pilon:173914..183236 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 784-1098:9009 |
| Aaloc | 46-780:6972 |
| Aaloc | 37-45:6960 |
| Aaloc | 1-33:1 |
|
