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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000066_pilon:1229463..1237159+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_015309 ID=XLOC_015309|Name=XLOC_015309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7697bp|location=Sequence derived from alignment at sc0000066_pilon:1229463..1237159+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGCGGAAGTGTCTCACGAATGGTACATGGTCTTTACCGGATACTTCGAA
CTGTACGCGATCTTCGGTAGTTGGTTTTCGTGAGAAGTTGTATAGAGGGA
TGGAAAAAATTGCCATTAAAGTAAGTTTGAAATTCGTTCCGTCTAAAAAG
CACTAGATCCCAAAAATTAGTTTCACGGTACTGCAAAGCTGTCCTCCATC
GGATATATATATGGTCGGGGAAATGGGAGATATATAGGTAGAATCGATAT
TTCATATGAATTAACTCAATAATGTAGGGCTTTTAGACAGCCTTTCGTTT
TTATAGGGTCCACGGCCAGCTCGTTCCGCTATCCATGAACCCAATGGATG
GAGTTTTGGATAGAGCGGGTATTTGACGAGCattcagtgattcaagcttt
taAGGGAGTACCTAAATTTGCTCAATTAAGCTTTTACCTCTATAAAATTG
CAACCGTCCTATGCAACCGACTGCTTCCTTCATGCCTTCTTTTTCAAACC
AGTCGTTTGTTGTAATTGActtaaatttcaatattttttaaacatttaga
TTTACGCTGAACTGACAACAAAGGTCGTAAATATGACAACATTGAAAGAT
TTTACCATACAATACAGAAACGAATGCTTGAATAAAGCtaccaaaatcaa
aaacttaAGTAAGTctccttaaccctattagccccaggggggggatagaa
tctaccacgctggagttcttttgtttatatctcggagaaaaatttttcaa
acgacttgaaactttctgacttttaataaaatcttattaagagtacttgt
acaaatttttagggtcataggttgtccaaatcaggttttatgactttatt
gtgaaacatgacataaaacccagctaaaatccttaaaactcaaaatttta
aagtgctgataacttctaaactatttattcaatcattttcaaattttgac
acgtgataggcattgataataaaaatttaaaaaatctaaagaaaTTtttt
gaaaatgatgacgtcatcatttatgacgtcatcaaattttgaaaatttta
ctcatcttcagcatagattttaagaaaaaatcttcatggaaattaaaaaa
actggcaattatgttaaagaatagtcttttacctttcagaatcttcaaac
agaattgaaatatctgtattggttcgactgtaatagacacttttgtaaac
catatatttgggcttttttccgacaggtggaaattttgtgatgacgtcat
cagtttttggatgacgtcatcaattttttttttcttcctggaaaattgta
tcatgatggagaacatctgtaccaaatttcgtggccatagctcttctaga
tcgaaaataatcgagggtggtagattctaccccccccccctggggataca
aaagtcaaaaaagcttggggctaatagggttaaaccaAATTGATCTTTAC
AACCGCAAGGTACCTGAAATAACAACCTGGTGCACATAATATTGTTTTAG
CGTCCAAATAATTACGTTAGATAGATATAAAACCAAAGTTCGTACATAAC
AACACCCCTGTCGGATAGCCCCGGTGGGAACGTCTTCCcacagtgaaaat
gaaaattttttttctgatccAAATGGGGATGAACGTTCCATTGTTCTTAG
GTaaaaaaaaTCGGTTTGGAATGGTTTCGgagtgctattttttccattga
attttaaatcGGGACGAAAAAATAGCCAATTTTCCACTGAGACTGAAACT
ATAGGATATCTTTCCCACCAAGGACAAAATATTGGCCAAATTATCAAGTG
GGCAGAGAGCCCACCAGGTATTGGACACAGTGATGCATAGCAGACCCAAA
ATctatgtaaaatttgaaaattcattgccgtGCTCTTCGATATACGTGAG
ACACTCTGGCACAGTAGCTCGTTTGTTACCGTAAACATTATTTCAATAAC
GAAATTCATGGAATATAACTAAATCGATCGTAACATAAAGGTAGatcatc
cagctacggtgcatTGGAATCTCGACCGGGCCAAAATAGAGATGCATCTC
TGCTTTTTGCTACGCACTTTAAAATGGGTTACGGGTAAGCAGGGAAAACC
AGTCTAAGGAGTGCCCCCCTTCCCTACCGTTAGGTAGACAACTAAAGAAA
AGGGAGCCCGCAGGTTGCCTCACTGCGGTCGTAAACATATTCAAGCATGC
ATATCGCCACACCAGCACATATTCTTCAATTACGGGCTTCCATGATATtg
atattgaaaatttatatcGGTTACATTATGAGATACGATGAACAAAGGAG
GATACTTGTCGCTTTAGTAAATTATATATATTGTCGGACAAGGTCCATTT
TAAATTCATCAGAACAGTCTCTGGAGTTTGTTAAGGTCCATAAATAGAGA
AttctttttgcactttttttctATATACCTGATGTTTTTTCTCTATTAAT
CTTATATATAGACTTTTCTGTAATAATCAATTTTTAGACTCGAGACAGAA
ATGTGGACCAGACATGGAGCTCCGTTATCTTCAATGTTGGTCAGAAACAC
CGAGTGATAGCACAGCATCGATTCCATGCCAACGTCCATTTTTTGTACCA
TTTCAAGGTACGGCTTtgttgaaatcgttattttttcGGCAAATTCAACA
AATTGTAAAGCTAAAGCtttttttGCTATAGTGCACAAGCTCATCGGTTG
AACCACTAGCGGGGTCATTGAAAGAGCTTTAAAATTATTACTTGGTtgct
tcttcaaaaattttcaatagttttaaaGCAGAGAAAACTGCCTGTCTTTT
AATCTTTGTTTTGCCAAAATCCGTCGTTTTACTGGAttctcttgtctccc
gaatagacggggggggggggtccgaataagcagggggtaggaaaattttc
taaattctaataggCGGGgtggatggaataagagggggggtaattttttt
taactgatatcaatttcaacaacaaaagtgAACCTTTAACAAATTAACAC
GTaaaaaaagaaccaatactaacaaaaaggaaaattttaacaagtttaag
gtctatctacactgtaataaaaaattaattattcaaatttaattagcggg
gggtcttaataagagcggggggggggggggtggattttttttgctcttaa
caattagcgggggggacgtctattggGGAAACAAGAGTATTCTGAAAGTT
TTAGCCCTCCCTTAAATCAGATATATATCGTAAAGAGCATCTCCTTCTAC
TTTACAGGCTCAATAACAAGACGATGTTTATCAAATGGGACCTGGGAGCG
ACATTCGAATGCTACACAATGCATACGGTTACATCCTGGACAGTTATGGT
GGCGTTTAGAAGATCTGTTGAATAAATACGGAGTCTATGTATGTAAAATT
TCGTCTTTATCAGGGGGTTCgactttgtttttattagtCCAATCAATGAC
AGTCCGGCTAATACTAGATTGTAGGCAAGTTCTTGATAAATGCTTTCATA
TGAATGTGTTTGGGCCAGTCGACAAGATATTTGACCGGCGAAtcgtaatt
tttattttgtcttaGCGACAAAGTTCACCTTTCCCCCCGATGAGATGCCA
AAATAAGACACCCTCCCTACCGTTAAAAATTCTCAACATTATGCATaagc
aaactttttgaaaagaacTGAGTAGCTTTGAAATTACATATGATAAATGT
TTGCTTATTCTAATAGCCAGATAAAATTTTTACTGGAATagaattcaatt
ttctttttttctatagaGAGTAATGCCTGCCTATGTCAATACCACAACGG
AACCAGAAGTGagtatttttcgaaaaaattagcTCCTTTAAGACTTTTCA
TTTAACAATACCAGGCCGAGAGATGGACTAGGTTTGGAAGGTGACGggcc
aaagtttgaaaattattcctttgagagactgaatttcgaaagttttgccc
attttattttctaattctgGTCCAATTATGGAAATATATGACCCTATGAG
AGATTTTgtgaccctttcagagactcaATCGCTGTTTTATATCACATACC
TGACACCGATTTTGCCTAAGTCATCCCCCTCCATCTAAATAATGACGCAT
ATACCaataaagaacaacatttcAATGTTTGCAGCGAACAATAGGCTAAT
AGGAAGCTACTCAATAGAAAGATATCCCagataaataaaatgaaatgtta
TCATGTAGAAACTGTTGTATTttgttacacccctgtgtcacagacccgct
gggaccccagccccactgaaaaattaatcaaaaattttgtccccagtggg
aaaatacccttgaatttcagccccactgggaaattgacttttatttcatc
cccactcgaaattacatgtttaaaaattgcactccaaaaccatcctcact
ggcattttttaaccttggaacaatagaatttctatccccattaggatttc
aattggaatttttatccccactgagggaaaaagttccaccggggctgtga
gacaggggtgttttgttAAAGAGACTTAACtaacttttctttttgtatAG
CCTCCAAAACCTGTTCCATTTAACAAAACCAGCTTTCAGAAAACTGTCAC
CATTCATGGACATAACACTACGCAAAAACTGCTAGGTAAGAAAATTGTGT
TGCTTAGAATAAATTGCTTTGCTCATTAGTGGTGACTCGCAATgttcatt
ttacattttatgtCAGTTTATGTCAGTGTACCGTGACTTCGGTAACTTTG
TCAATGAATTTTGTGAAAAGCAAAAGCGGTTTTGAAGGTGATGGAAATTC
ATGGAAGATAAAACTAACCTCCTTTTTACGATAATCTTCCTTATTCAAAT
ACGAGTTaaagttttctaattttttgactCCTTAGGAGTGGAGGTAGTAT
GTCCAGCTACAGTCGATCCTTACTACCAATACTGGCCGGATGGTCTTGTT
AATTCCACACTGGTGCAACCCTGTAACCGAAATTTCTTCGAAAACGGTAG
GTATCTACGAAGAGTAAACCACTCAAAAAAGTTCCAATCCAAAATTCCTT
TTGGaatcaaaagaatattttcacgAAGATCATATCACTCATcccaaaag
ttttttgatagtCAATAATGTTATTCCTTATTCGTCTCATTTTCTATCTT
TGAGGAGACGCCAGCTTGATAATGTTTGATATTCGTTTTTAGGCCTAACA
GAAAGATCGTGTGGAAGCAATGGTAAATGGGTTTCTAGGGTTGATACGTC
AAATTGTGTTAAAAGATCCAATGGAACAGCTATTGCTTTACATTTTCAAA
CGTTTGTTGGAAGATTTGGGTATGAGGTAGGTTTCTGAATATTTTCTCTG
GCACTATCCGGTCTGAGTAGGATTTTGAGCATACAAGCTTCAGTCTGCAA
ATGACAGATCCCCTAGATTTAGTTGCTACCTTCATTCTCAATTTTAGACC
GATTTATATACGACTGAAAGTTTTTTGGCAAAGACAGGTCTTTTCAATGC
TTCCTCATCAGTAAGACCAAGCTCCAACGCAACAACCACAAAATCCATCA
CTTTCACTACAAGTATAGATACTACAAAAACTCCGAATAAAACGTCGGCA
TTTTCAAATACCACTACATCTCCCTCTGCTACAAGACTCTCGAGGGTAAG
TGTTTTTTCACTGACGGCTTAAATTAACAGGATTAATGAAGcttttaacc
tttcaaagccgctaacttttttgaaaaaggccaaaaatttcatcattttt
ttctggaaatttattctttcaaaggccatttctcgaccaggacaaacgat
tcaggtatcaactttggtatcgttagaaagccctttctctcagctacaaa
aaatagcagattttttttctctgaatctcaagtggtcaggagttatgacc
aaaagactgtgtatcggtaaaatggccgtatataatatatatatacgtat
tctggcttctaagggttaatgGAACGAGGAATAGCCCAAAGTATTCGTAT
AATTTTTGGATAAAAAGATATGGTTGcccgtttttttgttttttttttca
gcagtATTTCCCAaaagaaggaaagaaagaatCGTCAAATCTTTCGTgtt
ttgcatttattttttaatccaTTTGATCTTGGTCGAGGGAATGTTTGAGG
GAAAAAAGAGCGAGGAGAAGCGGAAAGGGGTATACAAAAGATTTTTCGAT
CCCCCCTGTGTTGATGTGGGGAAAAATTGAAACGAAAACATCAACGTGTA
ACCATCTTGTTTCATTTACAAtggtgaaatttgtcgttcttttttaaatt
tgtcgTTCTAAGCATAATGAGCCTCGAACCGATTTTCTCGTATGCTTAAA
AAACGAAATGAGTAGtaaataagaaaacaaaatatgagtccatgtcaaat
ttttttttatgtttcagaTAACACCTTCAGAGGAAGAAcacataaaaaac
attttcaccaTTAAATGCAAAGAAATATCTAATCGCACAGGTAATGGTAA
TGGTAAAGTTCTAatattttgatagttttattGAATTCACTCTGATCATT
TACCAAGGTCGAAATTAATATCTTCTGATGAATTGCTTTACAGTATATGA
CTTAAAATAATATTACTAAGGTAGTTATATCTATCAGTAGTCAGTTGCAT
GGAAGCAGGGGAGGGCTGCCCCCTAAACGGCCGATTTTTCGGGGGAAGGC
ACCGAAAGGCAAGGGTCACTAAAAGACACATCTGGTTACTAACCTTTGGG
GCCTCTTTGTATATTTACACCTTAGAATTAGCAGTTTCaaccaaaaagag
aaaaaattccCAAAGATTTTCGTGATCGTTTCGTTCGCGTCATTTCAAAA
GctattttactttcaaaaggGGGCGCTTAAatcccaattttcgaaaatta
ccTCTCCATCTTTGGCCAACCGACCATGCTAATGATGTCTATCATAGATT
ACCCCTGCGCTCTTGGCTAACGAGTTGCCTGAACAAACTTATTCTTCTAA
TAAAGATAAATCGCTATTCAAAGGATATGATAATGTGCGGTGTGTGTATT
TTACGCGCAAGTTATTTGTAAATAGATAAACATTAGAAACTGACTTAATT
GTGAATTAACTTGAAGAAGCCCCCTTCCCTTTTCTCCCCCAGCAATTCTC
GTTATCGTGCACCCAGTGGGCACAAGATGTCCTATGGACGTCCTTAGAAA
GTCCATTTTGGACGGGAGGACGTCTAGAGGAGACGTCTATTGGACGTTCT
ATGGACGTGCAATATGAAGTCATATTCGTCTGTTCGATTTCGGTCCGAAT
AAGACGTCCTTATTTGACGCGAAATGGACGCTATTTGGacgtttctttta
aaatttgacgtcTGAAGGACGTTTTAACGACGTCATATGGACGCCTGAGT
CACTTCATTAATTGAAGTTTTCCAATTCACGATCACAtcacatatttttt
taattttcatgcattcaaataggtaaaaaaaGCCAATTCAAGCAAATCGC
TGGGAAGAGTCCCTTACGGTGTGTACACACAACACAGATCTTCTCTGtta
cttctttttcttttgaaatttacaGATTCATCACCAACCAATATGACATG
TTCCGGTCATGTCGATGAATATTACCATTGTTGGCAAGAAACTCCAGCAA
ATTCAACAATCAGAATCCCATGCATATCACTTTATTTCTATAGTGAT Coding sequence (CDS) from alignment at sc0000066_pilon:1229463..1237159+ >XLOC_015309 ID=XLOC_015309|Name=XLOC_015309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0000066_pilon:1229463..1237159+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGCGGAAGTGTCTCACGAATGGTACATGGTCTTTACCGGATACTTCGAA
CTGTACGCGATCTTCGGTAGTTGGTTTTCGTGAGAAGTTGTATAGAGGGA
TGGAAAAAATTGCCATTAAAGAGCGGAAGTGTCTCACGAATGGTACATGG
TCTTTACCGGATACTTCGAACTGTACGCGATCTTCGGTAGTTGGTTTTCG
TGAGAAGTTGTATAGAGGGATGGAAAAAATTGCCATTAAAaTTTACGCTG
AACTGACAACAAAGGTCGTAAATATGACAACATTGAAAGATTTTACCATA
CAATACAGAAACGAATGCTTGAATAAAGCtaccaaaatcaaaaacttaAa
TTTACGCTGAACTGACAACAAAGGTCGTAAATATGACAACATTGAAAGAT
TTTACCATACAATACAGAAACGAATGCTTGAATAAAGCtaccaaaatcaa
aaacttaAACTCGAGACAGAAATGTGGACCAGACATGGAGCTCCGTTATC
TTCAATGTTGGTCAGAAACACCGAGTGATAGCACAGCATCGATTCCATGC
CAACGTCCATTTTTTGTACCATTTCAAGACTCGAGACAGAAATGTGGACC
AGACATGGAGCTCCGTTATCTTCAATGTTGGTCAGAAACACCGAGTGATA
GCACAGCATCGATTCCATGCCAACGTCCATTTTTTGTACCATTTCAAGGC
TCAATAACAAGACGATGTTTATCAAATGGGACCTGGGAGCGACATTCGAA
TGCTACACAATGCATACGGTTACATCCTGGACAGTTATGGTGGCGTTTAG
AAGATCTGTTGAATAAATACGGAGTCTATGCTCAATAACAAGACGATGTT
TATCAAATGGGACCTGGGAGCGACATTCGAATGCTACACAATGCATACGG
TTACATCCTGGACAGTTATGGTGGCGTTTAGAAGATCTGTTGAATAAATA
CGGAGTCTATaGAGTAATGCCTGCCTATGTCAATACCACAACGGAACCAG
AAaGAGTAATGCCTGCCTATGTCAATACCACAACGGAACCAGAACCTCCA
AAACCTGTTCCATTTAACAAAACCAGCTTTCAGAAAACTGTCACCATTCA
TGGACATAACACTACGCAAAAACTGCTAGCCTCCAAAACCTGTTCCATTT
AACAAAACCAGCTTTCAGAAAACTGTCACCATTCATGGACATAACACTAC
GCAAAAACTGCTAGGAGTGGAGGTAGTATGTCCAGCTACAGTCGATCCTT
ACTACCAATACTGGCCGGATGGTCTTGTTAATTCCACACTGGTGCAACCC
TGTAACCGAAATTTCTTCGAAAACGGAGTGGAGGTAGTATGTCCAGCTAC
AGTCGATCCTTACTACCAATACTGGCCGGATGGTCTTGTTAATTCCACAC
TGGTGCAACCCTGTAACCGAAATTTCTTCGAAAACGGCCTAACAGAAAGA
TCGTGTGGAAGCAATGGTAAATGGGTTTCTAGGGTTGATACGTCAAATTG
TGTTAAAAGATCCAATGGAACAGCTATTGCTTTACATTTTCAAACGTTTG
TTGGAAGATTTGGGTATGAGGCCTAACAGAAAGATCGTGTGGAAGCAATG
GTAAATGGGTTTCTAGGGTTGATACGTCAAATTGTGTTAAAAGATCCAAT
GGAACAGCTATTGCTTTACATTTTCAAACGTTTGTTGGAAGATTTGGGTA
TGAGACCGATTTATATACGACTGAAAGTTTTTTGGCAAAGACAGGTCTTT
TCAATGCTTCCTCATCAGTAAGACCAAGCTCCAACGCAACAACCACAAAA
TCCATCACTTTCACTACAAGTATAGATACTACAAAAACTCCGAATAAAAC
GTCGGCATTTTCAAATACCACTACATCTCCCTCTGCTACAAGACTCTCGA
GGACCGATTTATATACGACTGAAAGTTTTTTGGCAAAGACAGGTCTTTTC
AATGCTTCCTCATCAGTAAGACCAAGCTCCAACGCAACAACCACAAAATC
CATCACTTTCACTACAAGTATAGATACTACAAAAACTCCGAATAAAACGT
CGGCATTTTCAAATACCACTACATCTCCCTCTGCTACAAGACTCTCGAGG
aTAACACCTTCAGAGGAAGAAcacataaaaaacattttcaccaTTAAATG
CAAAGAAATATCTAATCGCACAGaTAACACCTTCAGAGGAAGAAcacata
aaaaacattttcaccaTTAAATGCAAAGAAATATCTAATCGCACAGATTC
ATCACCAACCAATATGACATGTTCCGGTCATGTCGATGAATATTACCATT
GTTGGCAAGAAACTCCAGCAAATTCAACAATCAGAATCCCATGCATATCA
CTTTATTTCTATAGTGATATTCATCACCAACCAATATGACATGTTCCGGT
CATGTCGATGAATATTACCATTGTTGGCAAGAAACTCCAGCAAATTCAAC
AATCAGAATCCCATGCATATCACTTTATTTCTATAGTGAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066_pilon | genome | sc0000066_pilon:1229463..1237159 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1126-1245:7578 |
| Aaloc | 1051-1122:6418 |
| Aaloc | 853-1050:5448 |
| Aaloc | 721-852:5195 |
| Aaloc | 610-717:4888 |
| Aaloc | 523-606:4551 |
| Aaloc | 481-522:3767 |
| Aaloc | 352-480:3260 |
| Aaloc | 232-348:2490 |
| Aaloc | 121-228:550 |
| Aaloc | 1-120:1 |
|
