XLOC_015232 (mRNA) -

Overview
NameXLOC_015232
Unique NameXLOC_015232
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000337_pilon:138183..144138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015232 ID=XLOC_015232|Name=XLOC_015232|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5956bp|location=Sequence derived from alignment at sc0000337_pilon:138183..144138+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATCGCATCGATTGTGTTACTTACTTttttaatcatcaaaattgT TACCCCCGGACAAATTATTAAGAATAAACCGTTTCCAGTTGCTATTTTAG TACCAACACCAGACGAAGACGGGGGTTGTACTAAACGAATCATTGAAAAA GCGATTCGTGAGATCAACGAGCAGGATTTCTTATATGGGACTAAATTGAA TACTTATTTCAACCAAACACTAAACCAAACCATTACTTCAAACATCACAA CGCAGTACTATATCCAGCCCTATTTCAAAGAAGTACGGGATGATTTTATC AATACAATGGAACAATTTAATGATTTGTTTACTAAACCACCGTTAAAATC AGTTCTTATCGGAACCCCGCATCGTAGTCAAGCACCATCAGTATTCGATT TCGCATTACAGTACGGTTATTTACAATTCTCCTACGGTAACACAGATATC CCTTTTAAGAACTCTTTACAACATCAAGTCCAAACTCCATTACTACTTAA TGCTTCTTTTGAAGCTGCAGTTAGTCTGTTTATCAAATTAGGATGGCGTG AatacagtctagtttatgactTGGATGATAGTTTTCATCAATCCAGTAAT GTTATATTGGAGAAAATTATAAACACTCGTGTTGGGTCAAACGCCTCAAC TTTACTCACCAAAGGTACCATTTTCTCCAAATCGCATGAAAAAGAAAGCC GTGAAATGATCGAAAAACTTAAACGAACCAAATCAAGAGTTGTGTTCGGG CTATTCAGCATCGCAGGTGCTCGCAATATGTTTTGTAATGCGTTCAAGAC CAAGATATATAAACAACGTATGATTTGGCTTCTGTTTGAACGTTTACCAC AAGATTGGGCTTCTGCCGCATACGATTCGCGTCGAACCGAAGATGGAACT TTTCAAAGAGAGATATCTTGCAGCGAAGAACAATTACACATAGCTGCTGA TGGACATTTATCATTCACAAATACCCTATTGCGTAGAGATGATACAATAT TAGTAAGCGGTGAAACTGTTTCTcagtttaaaaaagattttgatatgATT CAAAAAGCGTCTGGTCATAAATGTAGAGATTACAGTACAGATGTTTACGA TACTGTCTGGGCATTGGCTAAAACGTTCCAACTTGCTGGTAAAGATCGTG ATTTCTTAGATTGCAAGTGTACATTAACGGGAGACTATTCTAGAATTGTT GATGAAAGATTCGCTGCTCATGTAACTTCAAAAGCATCCTCGGTCCGGTT CGAGGGAGCTACAGGGAGTGTTGGATTTTCCAAACTTTATCGAAAAAAGG ACCCGGTGTCACGTAGATACGGAAGTGTAGACCTGTCCGTATTTGATCTG CGTGACGGAACACAATTCGTGACAACATACGACGTTAACCAGCGGAAAAT TCACATTAAAAAAGATACGTTGACTAGATTATTCGGTTCTACCGTGCCAC GAGATAAAGCCAAAACCGCTCACATCACGCTTACGTTTAATTTCACGCTC CTTATCGTGATTTGGGTGTTAGCGATCGGTGGAATCGTGTTAACCTTCGT GTCACTTATCACGTCTCTATCCTCTTCActcaaaggcaatttctttcaac attttgaaacgTCTTTTGATAGTGTTGTATTCCTGGGTTGTGTTTTATGT TATAGCGCCGTAGTGGTATACGGCGTAGATACACGTTTCGTTGGTGAGGA ATACGTTGGTACggtttgttatgttttcataGCGAATCTCATGATTGGAT TTTCACTGACTTTTGGTTCACTTTTCACGAAGATTTGGTTGATCTACAAA CGCAGAGTGGCAACAGGTTATAAATTGGAGAAAGCTTTGAACGTGAGtga catttcttttttgtttcatctGAATTCTCTTTCCATTAGGTTACTTTCCA TTTAGGGGTTGCAAATTACTAGAACTTCTTTATAAAATATCGAATTGata aaattcgttttcataaaaaattttcctagcaaaatacattaaaatatcta tgtataaaaaaCAATTGTATTGGAATGACCAAAAAATCATTCTGATTACC GAGTTTTCACTATCATTATTACAATTAGCGGAAATATGCAAATTGCTCTC TTCTATAAATAATACTTTAAATTATATGCAGGTTTTAGCAGTGAAAATTA TCATCCTGCTTTTAAAGAAGAGGGCTGGAAAGAGACCACTATTTCCTTCC cttgtaaataaaaatgaatctTTTTAACCTACGCAGACAGTTATTGATAT TGGTCCAAGataattaatttttctggaTATTCAAGATCTGATTAAACTTT CCTTCCCTCAAATCATGGAGAAGtgataaatcaaaaaaattgtatagttc gaaattttaaattatACCCTCAAAAGGCTCTTGAAAACTTTCTCTTCCGT cgagaatgggcttttccagaaatacagtagtccgtgccccccccccccct gttgaggatattggatatccaggcgttaaagatttttatccaaaagtgga tatccagggggttgaatatctacaagggagcggatatccagggagtaaag tgtctttttaagtaaaaactacgatatccaggggtaagcatctttataag agaggatatccagggggttgagcatatttttaagagtggatatccttTAC TAATAATGTAGGATATTCCAGGGGtttgatacttcgaaaaatcaatatcc tcaacagtggggctaaatatttttttctggaaaagcccaatgtaaATTAA CGTTAATTCTACAGAATAGGGGCCAATGAAATgcttttttatattaaaaa aatgggAGAGTTTTGCAAACTTATAACTTAAACTGGCTTTAGAACACAAC CTCTTTCCTCCGGATTTCGTCTTATTCTACCTACGCTCATTaatctaaaa taaatttaaaaacagaCTCATTAACCTCATGACCTCAATTTTCGAAATGC GAAAAAACAGCATTGTAACTTAATAAATCAAAGCCTCGTTGTGGTTTCAT CTTAATTGTTTAAGAATGTCATTAAAATCTTATAACTGGACTTGAAGCAA ACTTTGGGTTTTTAAAGTACCACCATTAAAAAAGGTTTTCGAATAAGAGT TGGGCAAACCCCCCTCCCAACCGCCTTAGAAGTATAAAAATGCAGAAAAT ACGCAAATCTTGATCAAATGATTTTGCTTCTCTCTtccttgcaaaaaaaa tttgggaccGCCTTTTTGAAAAGGCCCGTCAAAGGGGAGGGGACGTTTTA CCTCTCCTATAAGAATAACGGCAACCTCTGTAATGACTCAGGTGGTTTTC TTCACTTTATTCttctaatttcttcttttcttaGAAATATCCAGATTGGA TGCTATATGTTTTCGTGATTTCCATGGTGATATGTGACGTCATTATCTTG GTTACCTTAGCAACCTTATCCCCAATCACGCTCACGAAACCAATTTCATT AAACACGTATAACTTTAAAACGGACACGAACGAGATTGGTCATATTATAT CGTGCACGTGTCAATACAAGACAGAATACACAATCGCGATTTATTGTTAT AAAGCACTCCTATTGCTCTTTGGTGTCTTCTTTAGTATTCAATTGCGTGG ATTAAGAAATTACAGTAAAGAGGTATAGTTCTTGTTCCTTATTGAGAATA TCCATGGCGTAATTATTTCTACGAAAACACTCCAGTTTTTACCAGTAGTG ATAACCTTCCGTTttttagaggtctgcgattcagactagcaaAAACCGGC CTGTTTCCGCGTagaaacattacgtaatgaatatcatgaattgatgAATT CAAGGATcggaaaagaaatgaaaaattacgaCCTTTTACGGTTTGGATAT CTACGCGAGAAATCAATtctgaaaaatacaatattcaccgaaaatctgtc aaaaactcctaggaaaatgaaataatCACGGTAAAATGTGTTCAGCcgta aaactttaaaaaacgcTGACTTCACACCCTCACACCTCGAAAAATTAGTG TCAAATGAGGGAATCCAGCCTTAAATCGATGCTATTCTTTCATTCTATAG GTCCATACAGGGAACACAACATTTGCTATTTACAACATTACAGCTATTGG TATTGTTGGAGTGATTTGTGTGGTGGCCCTTTCCAATACTACCAACCATC AAGCCATGTATTCGGTTATAGCTGTCTGTATACTGATTGGTGTCACAGCT TCTCTACTCTTACTCTTTGGAAAATCAATTCAAGGATTATGGGTAAGTTG CAAAGGATTATGGGTTATTATAAGGTACCAACTAAAAGAGTTAAGCATGG GGATGGAAAGTTTAATTGTTGATAAACAGTAGAATTCTTCTTCCGCGAAG GAAAGGAAAGGCCCATTGGCCTTTATAAACCCTTAAGAACCCTATaccct agtctgaatcgcacacctctacaaaaccacaggtagtgcAGAGGTTTATA AGGAGAGTGAATCCGTTTAGTGGATGCCAGAAGCCTAGCCATATCCACCA ACTTTGAACGGAGTTTttagaaaagtggtaccctaatgttaGCATTTCTC GACCTGACTGAATTTATAgttcaatgaaattttcgagaaactgtgtccag ggtatataaaggtcaatgTTAAAACCGAGCTATTTAGAGTAACATAGCAG GGTTTTCTTTTGACGGTCAATTTGGGTGACGGAGTGATGTTTGATTATCC TGTGATTCACAAAATGTAATTCTCCGATCATGACATCATGATTTCTCGTA TGTGGTTTCTTTATATGGCtttggaaatgattttcttaaaaaataaatta aggaaatttcaagttgCTACTGGACAAAAATACATAGGAAGAAATAATCA GCGTTAAGATTCAATTTAATGACTTCTAAGTGTTACCGTTGTCATCATAT TTTTAAGGAAACTGTCAAAGCAATtcgatttcaaatattttcaagtcgtt aaaatttctattatcaggcttcgatggccaaaacatGAAGAGCGAGTTAA GATCATTTTAAGGCTCTGTGGACcccaaaacacccgatttttaaTACATA GGAAGAAATAATCAGCGTTAAGATTCAATTTAATGACTTCTAAGTGTTAC CGTTGTCATCATATTTTTAAGGAAACTGTCAAAGCAATtcgatttcaaat attttcaagtcgttaaaatttctattatcaggcttcgatggccaaaacat GAAGAGCGAGTTAAGATCATTTTAAGGCTCTGTGGACcccaaaacacccg atttttaaggaaaatctttTGACGAGCACACTTCTCTTTTGCAGTACTGT TCACCTTTTAGTGTTTGATAATTAGGTGAAGCTGATTATTGACCTGGAAT TTTAAATTATTAATCTAGATCTagacaaaatagtgaaaataagaacaagt taaaaagatttttaggcttaagaAGTTAAGTTAAGAAgatccgaaggttt caaaaactttggagattcttataaaaaacgtatattcTATATTCTCTATG AAAATAAGAAGAATGACTCAAAACTCATATtaaagtttatttattttcta gtCCAAAGACGCACGTGTAGCGTACAAGATAAGGCGTGAAAGCACCACTC CGCCCAGAAGTATGAAATCCGCCCATTCTATTGATCGTGGTATATCAACA ACAAGTATTACCTCAATCGAACTCTCATCCACACAATTTCAACGTGATCG TGCGATCTCGGTCATATCATTGCGCGATCGCACAACTTCCTCGATGACGC TGCCGAGTTTCTTGTCTACGACCACATTAACGACTGTTTCTTCGGAGAAT GCTCTTCAAGACAATAGTGTCAATAAAGATGGTATCCTAGCTTTAAATGG TATTTATGTTGGCGAGGAAATGTGCACTGAAGGAGATGTAGAATGTGAGA ATAGAACTCAGGTAATCTCTGATGAGGATATCAAAAAGCAATCTGAAGCT GTTTGA

Coding sequence (CDS) from alignment at sc0000337_pilon:138183..144138+

>XLOC_015232 ID=XLOC_015232|Name=XLOC_015232|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5454bp|location=Sequence derived from alignment at sc0000337_pilon:138183..144138+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATCGCATCGATTGTGTTACTTACTTttttaatcatcaaaattgT
TACCCCCGGACAAATTATTAAGAATAAACCGTTTCCAGTTGCTATTTTAG
TACCAACACCAGACGAAGACGGGGGTTGTACTAAACGAATCATTGAAAAA
GCGATTCGTGAGATCAACGAGCAGGATTTCTTATATGGGACTAAATTGAA
TACTTATTTCAACCAAACACTAAACCAAACCATTACTTCAAACATCACAA
CGCAGTACTATATCCAGCCCTATTTCAAAGAAGTACGGGATGATTTTATC
AATACAATGGAACAATTTAATGATTTGTTTACTAAACCACCGTTAAAATC
AGTTCTTATCGGAACCCCGCATCGTAGTCAAGCACCATCAGTATTCGATT
TCGCATTACAGTACGGTTATTTACAATTCTCCTACGGTAACACAGATATC
CCTTTTAAGAACTCTTTACAACATCAAGTCCAAACTCCATTACTACTTAA
TGCTTCTTTTGAAGCTGCAGTTAGTCTGTTTATCAAATTAGGATGGCGTG
AatacagtctagtttatgactTGGATGATAGTTTTCATCAATCCAGTAAT
GTTATATTGGAGAAAATTATAAACACTCGTGTTGGGTCAAACGCCTCAAC
TTTACTCACCAAAGGTACCATTTTCTCCAAATCGCATGAAAAAGAAAGCC
GTGAAATGATCGAAAAACTTAAACGAACCAAATCAAGAGTTGTGTTCGGG
CTATTCAGCATCGCAGGTGCTCGCAATATGTTTTGTAATGCGTTCAAGAC
CAAGATATATAAACAACGTATGATTTGGCTTCTGTTTGAACGTTTACCAC
AAGATTGGGCTTCTGCCGCATACGATTCGCGTCGAACCGAAGATGGAACT
TTTCAAAGAGAGATATCTTGCAGCGAAGAACAATTACACATAGCTGCTGA
TGGACATTTATCATTCACAAATACCCTATTGCGTAGAGATGATACAATAT
TAGTAAGCGGTGAAACTGTTTCTcagtttaaaaaagattttgatatgATT
CAAAAAGCGTCTGGTCATAAATGTAGAGATTACAGTACAGATGTTTACGA
TACTGTCTGGGCATTGGCTAAAACGTTCCAACTTGCTGGTAAAGATCGTG
ATTTCTTAGATTGCAAGTGTACATTAACGGGAGACTATTCTAGAATTGTT
GATGAAAGATTCGCTGCTCATGTAACTTCAAAAGCATCCTCGGTCCGGTT
CGAGGGAGCTACAGGGAGTGTTGGATTTTCCAAACTTTATCGAAAAAAGG
ACCCGGTGTCACGTAGATACGGAAGTGTAGACCTGTCCGTATTTGATCTG
CGTGACGGAACACAATTCGTGACAACATACGACGTTAACCAGCGGAAAAT
TCACATTAAAAAAGATACGTTGACTAGATTATTCGGTTCTACCGTGCCAC
GAGATAAAGCCAAAACCGCTCACATCACGCTTACGTTTAATTTCACGCTC
CTTATCGTGATTTGGGTGTTAGCGATCGGTGGAATCGTGTTAACCTTCGT
GTCACTTATCACGTCTCTATCCTCTTCActcaaaggcaatttctttcaac
attttgaaacgTCTTTTGATAGTGTTGTATTCCTGGGTTGTGTTTTATGT
TATAGCGCCGTAGTGGTATACGGCGTAGATACACGTTTCGTTGGTGAGGA
ATACGTTGGTACggtttgttatgttttcataGCGAATCTCATGATTGGAT
TTTCACTGACTTTTGGTTCACTTTTCACGAAGATTTGGTTGATCTACAAA
CGCAGAGTGGCAACAGGTTATAAATTGGAGAAAGCTTTGAACATGAAAAT
CGCATCGATTGTGTTACTTACTTttttaatcatcaaaattgTTACCCCCG
GACAAATTATTAAGAATAAACCGTTTCCAGTTGCTATTTTAGTACCAACA
CCAGACGAAGACGGGGGTTGTACTAAACGAATCATTGAAAAAGCGATTCG
TGAGATCAACGAGCAGGATTTCTTATATGGGACTAAATTGAATACTTATT
TCAACCAAACACTAAACCAAACCATTACTTCAAACATCACAACGCAGTAC
TATATCCAGCCCTATTTCAAAGAAGTACGGGATGATTTTATCAATACAAT
GGAACAATTTAATGATTTGTTTACTAAACCACCGTTAAAATCAGTTCTTA
TCGGAACCCCGCATCGTAGTCAAGCACCATCAGTATTCGATTTCGCATTA
CAGTACGGTTATTTACAATTCTCCTACGGTAACACAGATATCCCTTTTAA
GAACTCTTTACAACATCAAGTCCAAACTCCATTACTACTTAATGCTTCTT
TTGAAGCTGCAGTTAGTCTGTTTATCAAATTAGGATGGCGTGAatacagt
ctagtttatgactTGGATGATAGTTTTCATCAATCCAGTAATGTTATATT
GGAGAAAATTATAAACACTCGTGTTGGGTCAAACGCCTCAACTTTACTCA
CCAAAGGTACCATTTTCTCCAAATCGCATGAAAAAGAAAGCCGTGAAATG
ATCGAAAAACTTAAACGAACCAAATCAAGAGTTGTGTTCGGGCTATTCAG
CATCGCAGGTGCTCGCAATATGTTTTGTAATGCGTTCAAGACCAAGATAT
ATAAACAACGTATGATTTGGCTTCTGTTTGAACGTTTACCACAAGATTGG
GCTTCTGCCGCATACGATTCGCGTCGAACCGAAGATGGAACTTTTCAAAG
AGAGATATCTTGCAGCGAAGAACAATTACACATAGCTGCTGATGGACATT
TATCATTCACAAATACCCTATTGCGTAGAGATGATACAATATTAGTAAGC
GGTGAAACTGTTTCTcagtttaaaaaagattttgatatgATTCAAAAAGC
GTCTGGTCATAAATGTAGAGATTACAGTACAGATGTTTACGATACTGTCT
GGGCATTGGCTAAAACGTTCCAACTTGCTGGTAAAGATCGTGATTTCTTA
GATTGCAAGTGTACATTAACGGGAGACTATTCTAGAATTGTTGATGAAAG
ATTCGCTGCTCATGTAACTTCAAAAGCATCCTCGGTCCGGTTCGAGGGAG
CTACAGGGAGTGTTGGATTTTCCAAACTTTATCGAAAAAAGGACCCGGTG
TCACGTAGATACGGAAGTGTAGACCTGTCCGTATTTGATCTGCGTGACGG
AACACAATTCGTGACAACATACGACGTTAACCAGCGGAAAATTCACATTA
AAAAAGATACGTTGACTAGATTATTCGGTTCTACCGTGCCACGAGATAAA
GCCAAAACCGCTCACATCACGCTTACGTTTAATTTCACGCTCCTTATCGT
GATTTGGGTGTTAGCGATCGGTGGAATCGTGTTAACCTTCGTGTCACTTA
TCACGTCTCTATCCTCTTCActcaaaggcaatttctttcaacattttgaa
acgTCTTTTGATAGTGTTGTATTCCTGGGTTGTGTTTTATGTTATAGCGC
CGTAGTGGTATACGGCGTAGATACACGTTTCGTTGGTGAGGAATACGTTG
GTACggtttgttatgttttcataGCGAATCTCATGATTGGATTTTCACTG
ACTTTTGGTTCACTTTTCACGAAGATTTGGTTGATCTACAAACGCAGAGT
GGCAACAGGTTATAAATTGGAGAAAGCTTTGAACAAATATCCAGATTGGA
TGCTATATGTTTTCGTGATTTCCATGGTGATATGTGACGTCATTATCTTG
GTTACCTTAGCAACCTTATCCCCAATCACGCTCACGAAACCAATTTCATT
AAACACGTATAACTTTAAAACGGACACGAACGAGATTGGTCATATTATAT
CGTGCACGTGTCAATACAAGACAGAATACACAATCGCGATTTATTGTTAT
AAAGCACTCCTATTGCTCTTTGGTGTCTTCTTTAGTATTCAATTGCGTGG
ATTAAGAAATTACAGTAAAGAGAAATATCCAGATTGGATGCTATATGTTT
TCGTGATTTCCATGGTGATATGTGACGTCATTATCTTGGTTACCTTAGCA
ACCTTATCCCCAATCACGCTCACGAAACCAATTTCATTAAACACGTATAA
CTTTAAAACGGACACGAACGAGATTGGTCATATTATATCGTGCACGTGTC
AATACAAGACAGAATACACAATCGCGATTTATTGTTATAAAGCACTCCTA
TTGCTCTTTGGTGTCTTCTTTAGTATTCAATTGCGTGGATTAAGAAATTA
CAGTAAAGAGGTCCATACAGGGAACACAACATTTGCTATTTACAACATTA
CAGCTATTGGTATTGTTGGAGTGATTTGTGTGGTGGCCCTTTCCAATACT
ACCAACCATCAAGCCATGTATTCGGTTATAGCTGTCTGTATACTGATTGG
TGTCACAGCTTCTCTACTCTTACTCTTTGGAAAATCAATTCAAGGATTAT
GGGTCCATACAGGGAACACAACATTTGCTATTTACAACATTACAGCTATT
GGTATTGTTGGAGTGATTTGTGTGGTGGCCCTTTCCAATACTACCAACCA
TCAAGCCATGTATTCGGTTATAGCTGTCTGTATACTGATTGGTGTCACAG
CTTCTCTACTCTTACTCTTTGGAAAATCAATTCAAGGATTATGGtCCAAA
GACGCACGTGTAGCGTACAAGATAAGGCGTGAAAGCACCACTCCGCCCAG
AAGTATGAAATCCGCCCATTCTATTGATCGTGGTATATCAACAACAAGTA
TTACCTCAATCGAACTCTCATCCACACAATTTCAACGTGATCGTGCGATC
TCGGTCATATCATTGCGCGATCGCACAACTTCCTCGATGACGCTGCCGAG
TTTCTTGTCTACGACCACATTAACGACTGTTTCTTCGGAGAATGCTCTTC
AAGACAATAGTGTCAATAAAGATGGTATCCTAGCTTTAAATGGTATTTAT
GTTGGCGAGGAAATGTGCACTGAAGGAGATGTAGAATGTGAGAATAGAAC
TCAGGTAATCTCTGATGAGGATATCAAAAAGCAATCTGAAGCTGTTTGAt
CCAAAGACGCACGTGTAGCGTACAAGATAAGGCGTGAAAGCACCACTCCG
CCCAGAAGTATGAAATCCGCCCATTCTATTGATCGTGGTATATCAACAAC
AAGTATTACCTCAATCGAACTCTCATCCACACAATTTCAACGTGATCGTG
CGATCTCGGTCATATCATTGCGCGATCGCACAACTTCCTCGATGACGCTG
CCGAGTTTCTTGTCTACGACCACATTAACGACTGTTTCTTCGGAGAATGC
TCTTCAAGACAATAGTGTCAATAAAGATGGTATCCTAGCTTTAAATGGTA
TTTATGTTGGCGAGGAAATGTGCACTGAAGGAGATGTAGAATGTGAGAAT
AGAACTCAGGTAATCTCTGATGAGGATATCAAAAAGCAATCTGAAGCTGT
TTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_015232XLOC_015232-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000337_pilongenomesc0000337_pilon:138183..144138 +
Properties
Property NameValue
Aaloc2323-2727:5552
Aaloc2131-2322:4051
Aaloc1843-2130:3335
Aaloc1-1842:1